BAC Information

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BAC

Clone NameB6Ng01-085N17
Chromosome14 (Build37)
Map Location 80,787,911 - 80,936,125
singlet/doubletdoublet
Overlap geneLOC672828
Upstream geneNarg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085N17.bB6Ng01-085N17.g
ACCDH899412DH899413
length1,1531,201
definitionDH899412|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N17, 5' end.DH899413|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,934,979 - 80,936,125)(80,787,911 - 80,789,140)
sequence
gaattcaatttccatctctgcagaaaaccacaagtctttagctacctgga
aggttggcttggaacagtgccaggtgactaatgggtgctggataaataca
tctaggattattacagtcaaatccattatcccttttcaggataagtcaac
aaattcagcatggcctttgacgttgttctctttgggactttcttgcttac
atagagtaaggactgctctgaaagagcaaggaccctcaagagtggcttag
tgtcttcttctgtatgggagtttacccaaaaggtttttcaataagacagg
tgtggcttgagagatctttaataactagacagtgtctcagctgacccaga
caattaagttctatctttactgtaggctggagataagtagtaaatatgta
ctcattgttcttatgggcacacgggtgggtttctgatttaatgttagtat
tgtagagagaatgttttcacaatgggctctctcttcacaacccagttact
gtcactgtgcacagcatcattttacatactaagaatcatccatgctcccc
ccaccaagtaaaacaatgaaattttatatcttcatcacagcatgttttat
tctttgtgactgaaattacctgagaaatcgaaaagtttctgaaaaagtca
gacaaaattcccaatcttaacttccaaaaatggaataatttaattcctac
attcttgtctgtcattcacaagcttttatattcttcttcccatcctgacc
tcaaaagccctagaactttaagtaccacagggacaaggacgaatatttag
agataagaccttatgattcctctctctctctctcctcttctattcttgaa
ggactcttattatgaacactatcattaacatatgaaaactgaaatttatg
tagctgcccaaggtaacagtaagtttccactcactaaatactgaactaaa
acacaaatgatatcatctccttgaaagctcctttaagagtcttctaattg
tcttagagcaaagtccagtgatcaacatccttgaattaaaaatgagactt
gaaccaagtgttccattttagcccacacacctgcctcatattttcatttt
ccccgaacacccttcatagaatatccaatcacataggccctttggcccct
tta
gaattcctgtcctgacttccttcagagatggactatagtccagaaatgta
agctgatataaaagtttacctctctaagttgcacttggtcagagagtttt
attcaagcagtgaaaataaaaatagaataaatatcgtattagtgacgaag
agaaggaattcaaagggaaaaaaaggaactaggaagagtagtcacttact
tatccttaggaaatgatgactaactgtaatagttcaccttgggatatata
taagaaggcgtctatgtggctcacaatttaggagtgaaaagtccaagata
atgtggctccatgaacatactttggtgaaagcctccctggctatgcagaa
catggtgaagaaggacaagaaacacagctgactgaagaatgggctaagca
tgtggaccatctcgatttcctaacactctcatcttgagtaccaaccattt
gggagaccaatactagtgccttctcacgaccaggcctctgtgacttttcc
tttgtttctaccatcagcagtctcaccatcttgataccattatagccaca
acagaacttccaggaacatggaactaggcaaggccttctgatctgagaag
aatcagaattaggagaaaacccaggggaatattttgatggtgtttattat
tctaataacacatgaatgccaagggggtgagggaaggggaatttagccat
gatttctgaccattttgacttgagtaacaggagcagaaactagaaaagaa
atccattgtttctggtgtgctgaatttgaagtgcacaacgttttctagga
gaggtatcttatagttatccatcagtctttataaacagtgtgttagtttc
aagctgataatataaacaggcatgatagccctcatttgatggacacatct
gaaatttactgaggctagatggcttctcctttatttcagtcacagagtta
agttgctcaaggccaatatttgttgtctacgattcaagatccaaggatcc
aatgggttgtgttactcctcttacaacgtaaagctaagttagtccacgaa
atatttatctcttcagaacaattctctgttttcatcttgatcgactacca
atgtatcgatccttagcgcttgccaagtgtagttgtaataacctaatgtc
cgttgctcatctctatagactccaatttgagtgttgtcctacaatttaaa
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80934979_80936125
seq2: B6Ng01-085N17.b_48_1200 (reverse)

seq1  TAAA-GAGCCAAAGGGCTTA-GTGATT-GATA-TCTATGCAGTGTGGTCG  46
      |||| | |||||||||| || |||||| |||| |||||| || ||| |||
seq2  TAAAGGGGCCAAAGGGCCTATGTGATTGGATATTCTATGAAGGGTGTTCG  50

seq1  AGG-AAATG-AAATATGAGGCAGGTGTGT-GGCTAAAATGGAACACTTGC  93
       || ||||| ||||||||||||||||||| ||||||||||||||||||| 
seq2  GGGAAAATGAAAATATGAGGCAGGTGTGTGGGCTAAAATGGAACACTTGG  100

seq1  TCCAAGTCTCATCTTTATATCAAGGATGTTGATCACTGGACTTTGCTCTA  143
      | |||||||||| ||||  |||||||||||||||||||||||||||||||
seq2  TTCAAGTCTCATTTTTAATTCAAGGATGTTGATCACTGGACTTTGCTCTA  150

seq1  AGAACAATTAGAAGACTCTTAAAGGAGCTTTCAAGGAGATGATATCATTT  193
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-ACAATTAGAAGACTCTTAAAGGAGCTTTCAAGGAGATGATATCATTT  199

seq1  GTGTTTTAGTTCAGTATTTAGTGAGTGGAAACTTACTGTTACCTTGGGCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAGTTCAGTATTTAGTGAGTGGAAACTTACTGTTACCTTGGGCA  249

seq1  GCTACATAAATTTCAGTTTTCATATGTTAATGATAGTGTTCATAATAAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATAAATTTCAGTTTTCATATGTTAATGATAGTGTTCATAATAAGA  299

seq1  GTCCTTCAAGAATAGAAGAGGAGAGAGAGAGAGAGGAATCATAAGGTCTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAAGAATAGAAGAGGAGAGAGAGAGAGAGGAATCATAAGGTCTT  349

seq1  ATCTCTAAATATTCGTCCTTGTCCCTGTGGTACTTAAAGTTCTAGGGCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAAATATTCGTCCTTGTCCCTGTGGTACTTAAAGTTCTAGGGCTT  399

seq1  TTGAGGTCAGGATGGGAAGAAGAATATAAAAGCTTGTGAATGACAGACAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTCAGGATGGGAAGAAGAATATAAAAGCTTGTGAATGACAGACAA  449

seq1  GAATGTAGGAATTAAATTATTCCATTTTTGGAAGTTAAGATTGGGAATTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGGAATTAAATTATTCCATTTTTGGAAGTTAAGATTGGGAATTT  499

seq1  TGTCTGACTTTTTCAGAAACTTTTCGATTTCTCAGGTAATTTCAGTCACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACTTTTTCAGAAACTTTTCGATTTCTCAGGTAATTTCAGTCACA  549

seq1  AAGAATAAAACATGCTGTGATGAAGATATAAAATTTCATTGTTTTACTTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAACATGCTGTGATGAAGATATAAAATTTCATTGTTTTACTTG  599

seq1  GTGGGGGGAGCATGGATGATTCTTAGTATGTAAAATGATGCTGTGCACAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGAGCATGGATGATTCTTAGTATGTAAAATGATGCTGTGCACAG  649

seq1  TGACAGTAACTGGGTTGTGAAGAGAGAGCCCATTGTGAAAACATTCTCTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTAACTGGGTTGTGAAGAGAGAGCCCATTGTGAAAACATTCTCTC  699

seq1  TACAATACTAACATTAAATCAGAAACCCACCCGTGTGCCCATAAGAACAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATACTAACATTAAATCAGAAACCCACCCGTGTGCCCATAAGAACAA  749

seq1  TGAGTACATATTTACTACTTATCTCCAGCCTACAGTAAAGATAGAACTTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACATATTTACTACTTATCTCCAGCCTACAGTAAAGATAGAACTTA  799

seq1  ATTGTCTGGGTCAGCTGAGACACTGTCTAGTTATTAAAGATCTCTCAAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGGGTCAGCTGAGACACTGTCTAGTTATTAAAGATCTCTCAAGC  849

seq1  CACACCTGTCTTATTGAAAAACCTTTTGGGTAAACTCCCATACAGAAGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTCTTATTGAAAAACCTTTTGGGTAAACTCCCATACAGAAGAA  899

seq1  GACACTAAGCCACTCTTGAGGGTCCTTGCTCTTTCAGAGCAGTCCTTACT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAAGCCACTCTTGAGGGTCCTTGCTCTTTCAGAGCAGTCCTTACT  949

seq1  CTATGTAAGCAAGAAAGTCCCAAAGAGAACAACGTCAAAGGCCATGCTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAAGCAAGAAAGTCCCAAAGAGAACAACGTCAAAGGCCATGCTGA  999

seq1  ATTTGTTGACTTATCCTGAAAAGGGATAATGGATTTGACTGTAATAATCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGACTTATCCTGAAAAGGGATAATGGATTTGACTGTAATAATCC  1049

seq1  TAGATGTATTTATCCAGCACCCATTAGTCACCTGGCACTGTTCCAAGCCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTATTTATCCAGCACCCATTAGTCACCTGGCACTGTTCCAAGCCA  1099

seq1  ACCTTCCAGGTAGCTAAAGACTTGTGGTTTTCTGCAGAGATGGAAATTGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCAGGTAGCTAAAGACTTGTGGTTTTCTGCAGAGATGGAAATTGA  1149

seq1  ATTC  1147
      ||||
seq2  ATTC  1153

seq1: chr14_80787911_80789140
seq2: B6Ng01-085N17.g_70_1270

seq1  GAATTCCTGTCCTGACTTCCTTCAGAGATGGACTATAGTCCAGAAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTGACTTCCTTCAGAGATGGACTATAGTCCAGAAATGTA  50

seq1  AGCTGATATAAAAGTTTACCTCTCTAAGTTGCACTTGGTCAGAGAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATATAAAAGTTTACCTCTCTAAGTTGCACTTGGTCAGAGAGTTTT  100

seq1  ATTCAAGCAGTGAAAATAAAAATAGAATAAATATCGTATTAGTGACGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCAGTGAAAATAAAAATAGAATAAATATCGTATTAGTGACGAAG  150

seq1  AGAAGGAATTCAAAGGGAAAAAAAGGAACTAGGAAGAGTAGTCACTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAATTCAAAGGGAAAAAAAGGAACTAGGAAGAGTAGTCACTTACT  200

seq1  TATCCTTAGGAAATGATGACTAACTGTAATAGTTCACCTTGGGATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAGGAAATGATGACTAACTGTAATAGTTCACCTTGGGATATATA  250

seq1  TAAGAAGGCGTCTATGTGGCTCACAATTTAGGAGTGAAAAGTCCAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGCGTCTATGTGGCTCACAATTTAGGAGTGAAAAGTCCAAGATA  300

seq1  ATGTGGCTCCATGAACATACTTTGGTGAAAGCCTCCCTGGCTATGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTCCATGAACATACTTTGGTGAAAGCCTCCCTGGCTATGCAGAA  350

seq1  CATGGTGAAGAAGGACAAGAAACACAGCTGACTGAAGAATGGGCTAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGAAGAAGGACAAGAAACACAGCTGACTGAAGAATGGGCTAAGCA  400

seq1  TGTGGACCATCTCGATTTCCTAACACTCTCATCTTGAGTACCAACCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCATCTCGATTTCCTAACACTCTCATCTTGAGTACCAACCATTT  450

seq1  GGGAGACCAATACTAGTGCCTTCTCACGACCAGGCCTCTGTGACTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACCAATACTAGTGCCTTCTCACGACCAGGCCTCTGTGACTTTTCC  500

seq1  TTTGTTTCTACCATCAGCAGTCTCACCATCTTGATACCATTATAGCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTACCATCAGCAGTCTCACCATCTTGATACCATTATAGCCACA  550

seq1  ACAGAACTTCCAGGAACATGGAACTAGGCAAGGCCTTCTGATCTGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTTCCAGGAACATGGAACTAGGCAAGGCCTTCTGATCTGAGAAG  600

seq1  AATCAGAATTAGGAGAAAACCCAGGGGAATATTTTGATGGTGTTTATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAATTAGGAGAAAACCCAGGGGAATATTTTGATGGTGTTTATTAT  650

seq1  TCTAATAACACATGAATGCCAAGGGGGTGAGGGAAGGGGAATTTAGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAACACATGAATGCCAAGGGGGTGAGGGAAGGGGAATTTAGCCAT  700

seq1  GATTTCTGACCATTTTGACTTGAGTAACAGGAGCAGAAACTAGAAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGACCATTTTGACTTGAGTAACAGGAGCAGAAACTAGAAAAGAA  750

seq1  ATCCATTGTTTCTGGTGTGCTGAATTTGAAGTGCACAACGTTTTCTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGTTTCTGGTGTGCTGAATTTGAAGTGCACAACGTTTTCTAGGA  800

seq1  GAGGTATCTTATAGTTATCCATCAGTCTTTATAAACAGTGTGTTAGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATCTTATAGTTATCCATCAGTCTTTATAAACAGTGTGTTAGTTTC  850

seq1  AAGCTGATAATATAAACAGGCATGATAGCCCTCATTTGATGGACAACATC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGCTGATAATATAAACAGGCATGATAGCCCTCATTTGATGGAC-ACATC  899

seq1  TGAAATTTACTGAGGCTAGATGGCTTCTCCTTTATTTCAGTCACAGAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAAATTTACTGAGGCTAGATGGCTTCTCCTTTATTTCAGTCACAGA-GT  948

seq1  TAAGTTGCTCAAGGCCAATATTTGTTGTTCTACGATTCAAAGATCCAAGG  1000
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  TAAGTTGCTCAAGGCCAATATTTGTTG-TCTACGATTC-AAGATCCAAGG  996

seq1  ATCCAAATGGTTGTTGTTACT-CTCTTACAAACGTAAAGCTAAAGTAGTT  1049
      ||||||  ||||| ||||||| ||||||| |||||||||||||  |||| 
seq2  ATCCAATGGGTTG-TGTTACTCCTCTTAC-AACGTAAAGCTAAGTTAGTC  1044

seq1  CACAGAATATTTATCTC-TCAGGACAAATTCTCTGTTTTCATCCTGATCA  1098
      |||  |||||||||||| |||| || ||||||||||||||||| ||||| 
seq2  CACGAAATATTTATCTCTTCAGAAC-AATTCTCTGTTTTCATCTTGATC-  1092

seq1  GGACTACACATGTATCAGATTCTTAGCAGCTGCCCACAGTGTTAATGTTT  1148
       ||||||  ||||||| ||| |||||| |||  ||| ||||    |  ||
seq2  -GACTACCAATGTATC-GATCCTTAGC-GCTTGCCA-AGTG----TAGTT  1134

seq1  GAAATAACACTAATGTCCTGGTTTGCTTCTCATTCATCT-TATATTAGCA  1197
      | |||||| |||||||||    ||||       |||||| ||||     |
seq2  GTAATAAC-CTAATGTCC---GTTGC-------TCATCTCTATA----GA  1169

seq1  CTCACTATTTGA-TGTTGTCCTAAACATTTAAAT  1230
      ||| | |||||| |||||||||| | ||||||||
seq2  CTC-CAATTTGAGTGTTGTCCTACA-ATTTAAAT  1201