BAC Information

Click to search

BAC

Clone NameB6Ng01-086G22
Chromosome14 (Build37)
Map Location 29,848,555 - 30,070,818
singlet/doubletdoublet
Overlap geneCacna2d3, Ppia-ps15
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086G22.bB6Ng01-086G22.g
ACCDH899832DH899833
length1,1321,147
definitionDH899832|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G22, 5' end.DH899833|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,069,687 - 30,070,818)(29,848,555 - 29,849,679)
sequence
gaattcttgctttaaagtgttttcttactattttagtataaaatactctc
taaggtgagggggaaagacatgaactcataatctgtagaagtatgcaaat
ggttggattggctgataggttacctttttataattaaacactttgatcag
aaatctgacaggaagacattatgaagagacccagttactatgaggctttg
gttcctggtttcggagggtttggtccatgctccctttccatttatcctgg
gtccatggtgagggagaagaagatggcagatgcagaagagcagtgtgtgg
tgatgccggcgggtgcgtggcagaggagagctgtttacctcatggcagct
ggaaagcaaaaagagagggagtaagtaccagggtagcatcatagcataat
ttcagaccaacatttttttttccctaggcataacctcttaaagttcccac
ctgctggggatgatgacttcaatataggaacccttaagagatgctggttc
cagactctaacagctggcaaaagtggaatgactctgggtctgagtttgga
tttgtaaatttaggtttgaataaagacagggacttgcccaagaatcccaa
gagtcaaggactttgaatttacacccattctggcttgctagccaaatgta
tttttattgcttcatactaccttctgctggatctgttttatcgaaaaaca
ggatgccacactcttcacaagactctgatagcgtcctggcactacagaaa
aactccttgaatattaatatgagaaggaattattgggtggacaaaattct
tctttatgtcttctattattagaaacttcatggtgaaatcaataccggga
aacaaattacatgttcaaatttaaatatccccaatgctcttagaatggcc
tttcaataaaccctctttcatcacatcaataattctggtaaattaaaatt
gcagacttaatcacctttcacaaggacatctttaggattatgaggactgg
atccagtgccctcctttaggggagagggagttcaaacaagtgtgtgttta
ccaccactggagatccacagccttcttgggagctgggtcatcactgtggc
atcattgagccggagcccattagttttagttt
gaattccttcagggttcacaagagttctagaattagatatcaaactctgt
cagtcaaatatatgaaagagccattgatctgtgtgctttaaagaagtgaa
tgttacaaagcgggagagagcgagagagcaagagagcgagagagctagag
agtgagagagtgagagagagcgagagagagcgagagagagcgagagagag
agagagagagagaagttaagagcacttgctgctctggaagaggactgatt
cagctcctattatccatgcctcacaaagtctgtaaccacagtgccagtgg
atctaatgctgtcttctgacctctgatggtccagagtatgcacatggtgt
actcacacacatgcagatattcatatccatataatttaaaatgatgataa
caataaatataaataactcatagtaagatgcccttaggtaagatttcata
gagaacaccacctgggaggaaggatgtagcttcaagaaatctagctaagg
caccactcaatgctaaaaaccatttacacaggagaagaatgacctctatc
agaataagggacatggcaggtagcctcttgctgacttctttttttaaaat
tataattctttttttattagatattttctttatttacatttcaaacatta
tcccctttcctagttttccctccaaaaatcccctaagccccaccccccac
acacactgctccccaacccacccactcccattgctagtcctggcattccc
tcatactggggcatagaatcttcacaggaccaaggggcctctccttccct
cacttctaaatatttatttgacactaactttactatgcaaatctacctgg
gaatttgagacacagatggtctaatttgtttaactcatagcctggtgggc
cgcagataccttgtcactgctctgctgcagagttctgactggatgatgtg
ttgggtcctctgttgaagtttttaaagtgtctgtagctcttgggagtggt
ccctttagagggtttaacacagaggatctggtttcttctggtcttgggac
tttttttttaacttctaaagtgcctagccctgaattgtgcttcctgtacc
tttgagagcaagctgtttctgaatgggctagtcttaactcttgacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30069687_30070818
seq2: B6Ng01-086G22.b_48_1179 (reverse)

seq1  AAACTAAAATTAAT-GGCTCGGCTTCAATGATGCCACCAGTGATGACCCA  49
      ||||||||| |||| ||||| |  |||||||||||| |||||||||||||
seq2  AAACTAAAACTAATGGGCTCCGGCTCAATGATGCCA-CAGTGATGACCCA  49

seq1  GCTCCAGGAAAGGCTGTGGATCT-CAGT-GTGGTAAACACACACTTTGTT  97
      |||||    |||||||||||||| |||| ||||||||||||||| |||||
seq2  GCTCCCAAGAAGGCTGTGGATCTCCAGTGGTGGTAAACACACAC-TTGTT  98

seq1  TGAACTCCCTCTCCCCT-AAGGAGGGCACTGGATCCAGTCCTCATAATCC  146
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAACTCCCTCTCCCCTAAAGGAGGGCACTGGATCCAGTCCTCATAATCC  148

seq1  TAAAGATGTCCTTGTGAAAGGTGATTAAGTCTGCATTTTTATATTTACCA  196
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  TAAAGATGTCCTTGTGAAAGGTGATTAAGTCTGCAATTTTA-ATTTACCA  197

seq1  GAATTATTGATGTGATGAAAGAGGGTTTTATTGAAAGGCCATTCTAAGAG  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAATTATTGATGTGATGAAAGAGGG-TTTATTGAAAGGCCATTCTAAGAG  246

seq1  CATTGGGGATATTTAATTTTGAACATGTAATTTGTTTCCCGGTATTGATT  296
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATTGGGGATATTTAAATTTGAACATGTAATTTGTTTCCCGGTATTGATT  296

seq1  TCACCATGAAGTTTCTAATAATAGAAGACATAAAGAAGAATTTTGTCCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGAAGTTTCTAATAATAGAAGACATAAAGAAGAATTTTGTCCAC  346

seq1  CCAATAATTCCTTCTCATATTAATATTCAAGGAGTTTTTCTGTAGTGCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATTCCTTCTCATATTAATATTCAAGGAGTTTTTCTGTAGTGCCA  396

seq1  GGACGCTATCAGAGTCTTGTGAAGAGTGTGGCATCCTGTTTTTCGATAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCTATCAGAGTCTTGTGAAGAGTGTGGCATCCTGTTTTTCGATAAA  446

seq1  ACAGATCCAGCAGAAGGTAGTATGAAGCAATAAAAATACATTTGGCTAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCAGCAGAAGGTAGTATGAAGCAATAAAAATACATTTGGCTAGC  496

seq1  AAGCCAGAATGGGTGTAAATTCAAAGTCCTTGACTCTTGGGATTCTTGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAATGGGTGTAAATTCAAAGTCCTTGACTCTTGGGATTCTTGGG  546

seq1  CAAGTCCCTGTCTTTATTCAAACCTAAATTTACAAATCCAAACTCAGACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCCTGTCTTTATTCAAACCTAAATTTACAAATCCAAACTCAGACC  596

seq1  CAGAGTCATTCCACTTTTGCCAGCTGTTAGAGTCTGGAACCAGCATCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCATTCCACTTTTGCCAGCTGTTAGAGTCTGGAACCAGCATCTCT  646

seq1  TAAGGGTTCCTATATTGAAGTCATCATCCCCAGCAGGTGGGAACTTTAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTTCCTATATTGAAGTCATCATCCCCAGCAGGTGGGAACTTTAAG  696

seq1  AGGTTATGCCTAGGGAAAAAAAAATGTTGGTCTGAAATTATGCTATGATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGCCTAGGGAAAAAAAAATGTTGGTCTGAAATTATGCTATGATG  746

seq1  CTACCCTGGTACTTACTCCCTCTCTTTTTGCTTTCCAGCTGCCATGAGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTGGTACTTACTCCCTCTCTTTTTGCTTTCCAGCTGCCATGAGGT  796

seq1  AAACAGCTCTCCTCTGCCACGCACCCGCCGGCATCACCACACACTGCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTCTCCTCTGCCACGCACCCGCCGGCATCACCACACACTGCTCT  846

seq1  TCTGCATCTGCCATCTTCTTCTCCCTCACCATGGACCCAGGATAAATGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCTGCCATCTTCTTCTCCCTCACCATGGACCCAGGATAAATGGA  896

seq1  AAGGGAGCATGGACCAAACCCTCCGAAACCAGGAACCAAAGCCTCATAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGCATGGACCAAACCCTCCGAAACCAGGAACCAAAGCCTCATAGT  946

seq1  AACTGGGTCTCTTCATAATGTCTTCCTGTCAGATTTCTGATCAAAGTGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGTCTCTTCATAATGTCTTCCTGTCAGATTTCTGATCAAAGTGTT  996

seq1  TAATTATAAAAAGGTAACCTATCAGCCAATCCAACCATTTGCATACTTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAAAAAGGTAACCTATCAGCCAATCCAACCATTTGCATACTTCT  1046

seq1  ACAGATTATGAGTTCATGTCTTTCCCCCTCACCTTAGAGAGTATTTTATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTATGAGTTCATGTCTTTCCCCCTCACCTTAGAGAGTATTTTATA  1096

seq1  CTAAAATAGTAAGAAAACACTTTAAAGCAAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAGTAAGAAAACACTTTAAAGCAAGAATTC  1132

seq1: chr14_29848555_29849679
seq2: B6Ng01-086G22.g_69_1215

seq1  GAATTCCTTCAGGGTTCACAAGAGTTCTAGAATTAGATATCAAACTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGGGTTCACAAGAGTTCTAGAATTAGATATCAAACTCTGT  50

seq1  CAGTCAAATATATGAAAGAGCCATTGATCTGTGTGCTTTAAAGAAGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAATATATGAAAGAGCCATTGATCTGTGTGCTTTAAAGAAGTGAA  100

seq1  TGTTACAAAGCGGGAGAGAGCGAGAGAGCAAGAGAGCGAGAGAGCTAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAAAGCGGGAGAGAGCGAGAGAGCAAGAGAGCGAGAGAGCTAGAG  150

seq1  AGTGAGAGAGTGAGAGAGAGCGAGAGAGAGCGAGAGAGAGCGAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGAGTGAGAGAGAGCGAGAGAGAGCGAGAGAGAGCGAGAGAGAG  200

seq1  AGAGAGAGAGAGAAGTTAAGAGCACTTGCTGCTCTGGAAGAGGACTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAAGTTAAGAGCACTTGCTGCTCTGGAAGAGGACTGATT  250

seq1  CAGCTCCTATTATCCATGCCTCACAAAGTCTGTAACCACAGTGCCAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTATTATCCATGCCTCACAAAGTCTGTAACCACAGTGCCAGTGG  300

seq1  ATCTAATGCTGTCTTCTGACCTCTGATGGTCCAGAGTATGCACATGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGCTGTCTTCTGACCTCTGATGGTCCAGAGTATGCACATGGTGT  350

seq1  ACTCACACACATGCAGATATTCATATCCATATAATTTAAAATGATGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACACATGCAGATATTCATATCCATATAATTTAAAATGATGATAA  400

seq1  CAATAAATATAAATAACTCATAGTAAGATGCCCTTAGGTAAGATTTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATATAAATAACTCATAGTAAGATGCCCTTAGGTAAGATTTCATA  450

seq1  GAGAACACCACCTGGGAGGAAGGATGTAGCTTCAAGAAATCTAGCTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACCACCTGGGAGGAAGGATGTAGCTTCAAGAAATCTAGCTAAGG  500

seq1  CACCACTCAATGCTAAAAACCATTTACACAGGAGAAGAATGACCTCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCAATGCTAAAAACCATTTACACAGGAGAAGAATGACCTCTATC  550

seq1  AGAATAAGGGACATGGCAGGTAGCCTCTTGCTGACTTCTTTTTTTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGGGACATGGCAGGTAGCCTCTTGCTGACTTCTTTTTTTAAAAT  600

seq1  TATAATTCTTTTTTTATTAGATATTTTCTTTATTTACATTTCAAACATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCTTTTTTTATTAGATATTTTCTTTATTTACATTTCAAACATTA  650

seq1  TCCCCTTTCCTAGTTTTCCCTCCAAAAATCCCCTAAGCCCCACCCCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTCCTAGTTTTCCCTCCAAAAATCCCCTAAGCCCCACCCCCCAC  700

seq1  ACACACTGCTCCCCAACCCACCCACTCCCATTGCTAGTCCTGGCATTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGCTCCCCAACCCACCCACTCCCATTGCTAGTCCTGGCATTCCC  750

seq1  TCATACTGGGGCATAGAATCTTCACAGGACCAA-GGGCCTCTCC-TCCCT  798
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  TCATACTGGGGCATAGAATCTTCACAGGACCAAGGGGCCTCTCCTTCCCT  800

seq1  CACTTCTAAATATTTATTTGACACTAACTTTACTATGCAAATCTACCTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTAAATATTTATTTGACACTAACTTTACTATGCAAATCTACCTGG  850

seq1  G-ATTTGAGACACAGATGGCCTAATTTG-TTAACTCATAGCCT-GTGGGC  895
      | ||||||||||||||||| |||||||| |||||||||||||| ||||||
seq2  GAATTTGAGACACAGATGGTCTAATTTGTTTAACTCATAGCCTGGTGGGC  900

seq1  CGCAGATACC-TGTCACTGCTCTGCTGCAGAGTTCTGACTGGATGATGTG  944
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGCAGATACCTTGTCACTGCTCTGCTGCAGAGTTCTGACTGGATGATGTG  950

seq1  TT-GGTCCTCTGTTGAAGTTTTTAAAGTGTCTGTAGCTCTTGGGAGTGGT  993
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCCTCTGTTGAAGTTTTTAAAGTGTCTGTAGCTCTTGGGAGTGGT  1000

seq1  CCC-TTAGAGGG-TTAACACAGAGGATCTGGTTTC-TCTGGTCTT-GGAC  1039
      ||| |||||||| |||||||||||||||||||||| ||||||||| ||||
seq2  CCCTTTAGAGGGTTTAACACAGAGGATCTGGTTTCTTCTGGTCTTGGGAC  1050

seq1  TATTTTT---ACTTCTAAAGTG-CTAACCCTGAA-TGTGCTT-CTGTACC  1083
      | |||||   |||||||||||| ||| ||||||| ||||||| |||||||
seq2  TTTTTTTTTAACTTCTAAAGTGCCTAGCCCTGAATTGTGCTTCCTGTACC  1100

seq1  TTTCAGAGC-AGCTG-TTCTG-ATGGGC-AGTCCTAACTC-TGACAT  1125
      ||| ||||| ||||| ||||| |||||| |||| |||||| ||||||
seq2  TTTGAGAGCAAGCTGTTTCTGAATGGGCTAGTCTTAACTCTTGACAT  1147