BAC Information

Click to search

BAC

Clone NameB6Ng01-087M07
Chromosome14 (Build37)
Map Location 114,579,760 - 114,580,951
singlet/doubletsinglet
Overlap genenone
Upstream geneTpm3-rs7, LOC100043510, LOC382947
Downstream geneLOC668791, LOC100043821, LOC100043521, Gpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087M07.bB6Ng01-087M07.g
ACCDH900800DH900801
length1,174611
definitionDH900800|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M07, 5' end.DH900801|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggatgccatgtctgctcctaagagcagaaacataactcagtt
ccaattttagagaccagtaaataaaacttgttctttgttttttaggatgc
tgactttgggaggttgcagttaccagcccaggtgtccttccaaactttta
ttttaagaagctacataacacaccaacaatatggatcaaagcagtgtttc
agggaacaatgctatttccttctatggtgccacagtaaggtatgacataa
gtaccaagtaaagtaccttacaggaggattttgatggaaaagaaccctta
ccagctacttttgatattgtggctacttgagattttaatgaatctagata
aactcatataaaatcatttatcgaaggaaagataccttaagaaaaataaa
tttacaaagaaacctgaagaagttcataagaaaaactaacagtgtcatgg
ctataatctgaagagtgattatgcatttaacattcttagtttatagtgaa
taaaatgtttttatcatacaatgcattagaagatgaaccgcgtggtcaaa
agactaaactatcagttccccaaaagatagatttaacattgagatttaat
ttgtcatgtggttatttatattatcttcagtgagtacacataatactatg
tattatatatttaagaatataacatggacagaaaactatttgaagaataa
attttgtatcacatcagaacattttataacttgcatgcaaattttgttgc
atgcaatctccacatacctaaagcaaaaataaattgcatgcattttgtac
aatgcaatcttttcaaagaacttccaaaaccatacaattctgaactatgg
aattcacagctgcttcccaaataggagcactgagcttatctcgcttacag
tcttttcacactttaattctgaagaaagtataaatccataatatattatt
atagatggaaaattcaatcagtcatccagctgttacagttatatgtcagt
agctgctttctctgatttgtgtacgctatttaaagccttatgtcaacaga
tataaatatgatttctgggtgttcagatgtgtatggggggtgtgtgtttc
tttaactggtagatcactaagtattatcataaattacagtacatgtttcc
aaacctgaaacgttcaggcatgct

gaattctttagcagctactgagcactgcatggatataaaaatcactgaag
gcacacagacattttcccaaaattttagtcaaaatcagcaattgtgcata
acagctgtttgaaaatgattctctctcctctctctctctctctctctctc
tctctctctctcgctctctgtgtctctctctctctccccccccaccttcc
tcactcccggggtgtctatatttttattcgctctcgagagctcactgtga
cctctgtttgtttatgtctctccgtgggcgcgcacgcgctcccccccccg
cgcgggcatacttatttagatatcacacatatatctgaatatatacacac
agtgggcgcgtgaaaacaccctatcttaaaatatggatagaagtgaaaaa
atatctctctttgtcatacaaaaaaactctgtagtgcttctcatagatat
atcactctaaaatatactcaaaccaacctgtatcctgctctctcgctaga
ggaatgagtatatattatatcttctacaaaaaaaaccgacacactccaag
tggggagagatatatatatctacatacacacatagacggagttttatgtg
ctctctcctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114579760_114580951
seq2: B6Ng01-087M07.b_48_1221 (reverse)

seq1  AGCATGCCTGAACGTTTCA-GTTTTGAAACATTGTTTACTGTAATATTAT  49
      ||||||||||||||||||| |||| ||||||   | ||||||||| ||||
seq2  AGCATGCCTGAACGTTTCAGGTTTGGAAACA---TGTACTGTAAT-TTAT  46

seq1  GATAATATACTTAGTGATCTACCAAGTTAAAAGAAACACACA-CACACAT  98
      ||||  ||||||||||||||||| |||| ||||||||||||| | | |||
seq2  GATA--ATACTTAGTGATCTACC-AGTT-AAAGAAACACACACCCCCCAT  92

seq1  ACACATACTGAAACACTCAGAAAATTCATATTTATATCTGTTGACATAAG  148
      |||||| ||| ||||| ||||||  |||||||||||||||||||||||||
seq2  ACACAT-CTG-AACACCCAGAAA--TCATATTTATATCTGTTGACATAAG  138

seq1  GCTTTTAAATTAAGCGGTACACAAATCAGAGAAAGCAGCTACCTGACAAT  198
      || |||||||  ||| ||||||||||||||||||||||||| ||||| ||
seq2  GC-TTTAAAT--AGC-GTACACAAATCAGAGAAAGCAGCTA-CTGAC-AT  182

seq1  ATAACTGTAACAGCTGGATGACTGATTGAATTTTTCCATCTATAATAATA  248
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATAACTGTAACAGCTGGATGACTGATTGAA-TTTTCCATCTATAATAATA  231

seq1  TATTATGGATTTATACCTTTCTTCAGAATTAAAGTGTGAAAAGACTGTAA  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTATGGATTTATA-CTTTCTTCAGAATTAAAGTGTGAAAAGACTGTAA  280

seq1  GCGAGATAAGCTCAGTGCTCCTATTTGGGAAGCAGCTGTGAATTCCATAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGATAAGCTCAGTGCTCCTATTTGGGAAGCAGCTGTGAATTCCATAG  330

seq1  TTCAGAATTGTATGGTTTTGGAAGTTCTTTGAAAAGATTGCATTGTACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATTGTATGGTTTTGGAAGTTCTTTGAAAAGATTGCATTGTACAA  380

seq1  AATGCATGCAATTTATTTTTGCTTTAGGTATGTGGAGATTGCATGCAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGCAATTTATTTTTGCTTTAGGTATGTGGAGATTGCATGCAACA  430

seq1  AAATTTGCATGCAAGTTATAAAATGTTCTGATGTGATACAAAATTTATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCATGCAAGTTATAAAATGTTCTGATGTGATACAAAATTTATTC  480

seq1  TTCAAATAGTTTTCTGTCCATGTTATATTCTTAAATATATAATACATAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAGTTTTCTGTCCATGTTATATTCTTAAATATATAATACATAGT  530

seq1  ATTATGTGTACTCACTGAAGATAATATAAATAACCACATGACAAATTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGTACTCACTGAAGATAATATAAATAACCACATGACAAATTAAA  580

seq1  TCTCAATGTTAAATCTATCTTTTGGGGAACTGATAGTTTAGTCTTTTGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGTTAAATCTATCTTTTGGGGAACTGATAGTTTAGTCTTTTGAC  630

seq1  CACGCGGTTCATCTTCTAATGCATTGTATGATAAAAACATTTTATTCACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGGTTCATCTTCTAATGCATTGTATGATAAAAACATTTTATTCACT  680

seq1  ATAAACTAAGAATGTTAAATGCATAATCACTCTTCAGATTATAGCCATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAAGAATGTTAAATGCATAATCACTCTTCAGATTATAGCCATGA  730

seq1  CACTGTTAGTTTTTCTTATGAACTTCTTCAGGTTTCTTTGTAAATTTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTAGTTTTTCTTATGAACTTCTTCAGGTTTCTTTGTAAATTTATT  780

seq1  TTTCTTAAGGTATCTTTCCTTCGATAAATGATTTTATATGAGTTTATCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGGTATCTTTCCTTCGATAAATGATTTTATATGAGTTTATCTA  830

seq1  GATTCATTAAAATCTCAAGTAGCCACAATATCAAAAGTAGCTGGTAAGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTAAAATCTCAAGTAGCCACAATATCAAAAGTAGCTGGTAAGGG  880

seq1  TTCTTTTCCATCAAAATCCTCCTGTAAGGTACTTTACTTGGTACTTATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCATCAAAATCCTCCTGTAAGGTACTTTACTTGGTACTTATGT  930

seq1  CATACCTTACTGTGGCACCATAGAAGGAAATAGCATTGTTCCCTGAAACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTTACTGTGGCACCATAGAAGGAAATAGCATTGTTCCCTGAAACA  980

seq1  CTGCTTTGATCCATATTGTTGGTGTGTTATGTAGCTTCTTAAAATAAAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGATCCATATTGTTGGTGTGTTATGTAGCTTCTTAAAATAAAAG  1030

seq1  TTTGGAAGGACACCTGGGCTGGTAACTGCAACCTCCCAAAGTCAGCATCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGGACACCTGGGCTGGTAACTGCAACCTCCCAAAGTCAGCATCC  1080

seq1  TAAAAAACAAAGAACAAGTTTTATTTACTGGTCTCTAAAATTGGAACTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAAAGAACAAGTTTTATTTACTGGTCTCTAAAATTGGAACTGA  1130

seq1  GTTATGTTTCTGCTCTTAGGAGCAGACATGGCATCCTGGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTTCTGCTCTTAGGAGCAGACATGGCATCCTGGAATTC  1174


| Home | SequenceCutter | Blast | Download |