BAC Information

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BAC

Clone NameB6Ng01-088B21
Chromosome14 (Build37)
Map Location 54,232,540 - 54,233,734
singlet/doubletsinglet
Overlap genenone
Upstream geneTrav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467
Downstream geneLOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088B21.bB6Ng01-088B21.g
ACCDH901061DH901062
length1,1801,181
definitionDH901061|Mus musculus domesticus DNA, BAC clone: B6Ng01-088B21, 5' end.DH901062|Mus musculus domesticus DNA, BAC clone: B6Ng01-088B21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttattgacaatgcagatatgctctttttatacttacatctcacc
tttcagagaagtcatcctggaatcgcaaatatacataactactcttaggg
aagttatgcgaagtcatttgatcttgaggatggctccattcatttcattc
actctcacagcatccagtgttggaaggctgaattcctgatagaatagcat
tgtggattccctgtgagatctgccaaaccttgcaacaaatcctttctcct
tcttgtggacccttctcagcacgttcccaaacctttctagtgggttttgt
tttctttgtgtcaactgtgaatatctacagacactacctgggaacccagt
gtctacactggcttgggaagtaagagggtcatcctcattgtccgtcctgt
cctcaacatcagtttccttagtaccatccccatcccttatgtaacagacc
acttactgggcctgtcctctcactcctcctcatttactaggaactcagcc
aaaccttgctgcatttcctttcatctctcacccccattcctctatgtcaa
aggccaatagagacattctacctgggaatcttgtggtcacaaccacctgg
gaaaaaaagtatctcatcttcaatggccttcatggcctacaatgctattt
ctctagtttcattccccacctctgtatcagaccacttgtaggggccagag
cttgcttcctctctgctttcattatccagggactccagcaaaccttgcag
agaactcagctcccttgtcctgtggaccttcacagtacccgctctagtac
aaacccctctccattatgtcaccctcaagtgcataagaaaactctttccg
tgagtgaccacatgagcaggacttaaggagattattcacactatcctatc
tgtcccccattacaatctctccattcttatccttaacctggtaacaatgt
gcttacagtccccttcctcaacgtcattcactggacacaaaacttcttga
ctcagacccaggtccctttcatgctcacctctccccccccaaaaaaatct
ttgccttactgtaactgcttgtagatcctctgcctcacaagcaatttccc
caacctccctatgaatactacctttacctatgaaaccatcccttgggtgt
atggaagcctctcgaacctttctgagccca
gaattcagaactcttcagctggggaacggtggtaataaagtgttcccgca
acacagactgttgagaaggattcaactgcgtgaattcagaactcttcagc
tggggaatagggtacccgtaagtatagctttacaaggtaagtctggtctt
gaactttctaatgaaattcaagacagtctatcagaagtaaagtgggaaat
agctttacaaggtatgtctggccttgaactttctaacgaaattcaagaca
gtctatcagaagtaaagtgggaaatagctttacaaggtatgtttggcctt
gaactttttctagtgttaggagcctttttgttccttttcacatgttatca
agtggttaaggcagggctgaaaattctggatgaaattcagggcaatctat
cagaagtaaagcggggagagagagtaggagcaaagaggaaatatggtaca
caaaataagtatacaggcctttccaagggtcttgaacccgaggaaaagtt
taggtcaggtaagaatacctggggagagattggaaggaaggagaagaaaa
aagaaaagaaaaaagatcaattagcggaggtctctaggagaaggagccta
tactcatcactagatgagctcaaggagccagttcttaatagttctgaatc
agatgaaaaggctattagggcctggaaggcgctcgcccgagcaggtgaag
ccacaggacaactaacaaagatcgtccagggacctcacgagtcattctca
gattttgtgggccagaatgacagaggcagcagagcgtatttttgcagatt
tggagcaagccgcacctctggtagaatagcttatttatgagcaagccatg
caggaatgcagagcggcccatagccccaagaaagaacaaaggtttacaag
actggcttcaggtttgtcgggagctcgggggacctctcaccaatgcagct
tagtgccgcatcttcaatccaaaatgctcatggcagaaatgatcacgcat
agatctgtcaggacattgatgtattatgcaatagctcagctggatgtgac
aagtttcgatgttacctccattcagtatgtaattctatgtcagctactgg
tcaaaagcctcttcagtatgtacgaattggaacgcttgcactggtacgaa
ctctcttgcgggaaatgtagacatgtagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_54232540_54233734
seq2: B6Ng01-088B21.b_45_1224 (reverse)

seq1  TGGGCTCAGAGAAAAGTCTGAGAGAGGCTTCCAAAACAACCCAAGGGGAT  50
      |||||||||   ||||  |  |||||||||||| |   |||||| |||||
seq2  TGGGCTCAG---AAAG-GTTCGAGAGGCTTCCATA--CACCCAA-GGGAT  43

seq1  TGTGTTCATAAGTAAAGGTAGTATTCATAGGGA-GTTGGGGACA-TGC-T  97
       || |||||| |||||||||||||||||||||| |||||||| | ||| |
seq2  GGT-TTCATAGGTAAAGGTAGTATTCATAGGGAGGTTGGGGAAATTGCTT  92

seq1  GTGA-GCAGAGGATCTTACAAGCAGGTTACAGTAAGGCAAAGAATTTTTT  146
      |||| |||||||||| |||||||| ||||||||||||||||||  |||||
seq2  GTGAGGCAGAGGATC-TACAAGCA-GTTACAGTAAGGCAAAGA--TTTTT  138

seq1  TTGGGGGGGGAGAGGTGAGCATGAAAGGGACCCTGGGTCTGAGTCAAGAG  196
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  TTGGGGGGGGAGAGGTGAGCATGAAAGGGA-CCTGGGTCTGAGTCAAGAA  187

seq1  TTTTGGTGTCCAGTGAATGACGTTGAGGAAGGGGACCTGTAAGCACATTG  246
       ||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTTTGTGTCCAGTGAATGACGTTGAGGAAGGGGA-CTGTAAGCACATTG  236

seq1  TTACCAGGTTAAGGATAAGAATGGAGAAATTGTAATGGGGGACAGATAGG  296
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTACCAGGTTAAGGATAAGAATGGAGAGATTGTAATGGGGGACAGATAGG  286

seq1  ATAGTGTGAATAATCTCCTTAAGTCCCTGCTCATGTGGTCACTCACGGAT  346
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  ATAGTGTGAATAATCTCCTTAAGT-CCTGCTCATGTGGTCACTCACGGAA  335

seq1  AGAGTGTTCTTATGCACTTGAGGGTGACAGAATGGAGAGGGGTTTGTACT  396
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAGTTTTCTTATGCACTTGAGGGTGACATAATGGAGAGGGGTTTGTACT  385

seq1  AGAGCGGGTACTGTGAAGGTCCACAGGACAAGGGAGCTGAGTTCTCTGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGGGTACTGTGAAGGTCCACAGGACAAGGGAGCTGAGTTCTCTGCA  435

seq1  AGGTTTGCTGGAGTCCCTGGATAATGAAAGCAGAGAGGAAGCAAGCTCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGCTGGAGTCCCTGGATAATGAAAGCAGAGAGGAAGCAAGCTCTG  485

seq1  GCCCCTACAAGTGGTCTGATACAGAGGTGGGG-ATGAAACTGGAGAAATA  545
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  GCCCCTACAAGTGGTCTGATACAGAGGTGGGGAATGAAACTAGAGAAATA  535

seq1  GCATTGTAGGACATGAAGGCCATTGAAGATGAGATACTTTTTCTTTTCCC  595
      |||||||||| ||||||||||||||||||||||||||||    |||| ||
seq2  GCATTGTAGGCCATGAAGGCCATTGAAGATGAGATACTT----TTTTTCC  581

seq1  CAGGTGGTTGTGACCACAAGATTCCCAGGTAGAATGTCTCTATTGGCCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTTGTGACCACAAGATTCCCAGGTAGAATGTCTCTATTGGCCTT  631

seq1  TGACATAGAGGAATGGGGGTGAGAGATAAAAGGAGATGCAGCAAGGTTTG  695
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  TGACATAGAGGAATGGGGGTGAGAGATGAAAGGAAATGCAGCAAGGTTTG  681

seq1  GCTGAGTTCCTAGTAAATGGAGGAGGAGTGAGAGGACAGGCCCAGTAAGT  745
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTGAGTTCCTAGTAAAT-GAGGAGGAGTGAGAGGACAGGCCCAGTAAGT  730

seq1  GGTCTGTTACATAAGGGATGGGGATGGTACTAAGGAAACTGATGTTGAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTTACATAAGGGATGGGGATGGTACTAAGGAAACTGATGTTGAGG  780

seq1  ACAGGAAGGACAATGAGGATGACCCACTTACTTCCCAAGCCAGTGTAGAC  845
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAGGACGGACAATGAGGATGACCCTCTTACTTCCCAAGCCAGTGTAGAC  830

seq1  ACTGGATTCCCAGATAGTGTCTGTAGATATTCACAGTTGACACAAAGAAA  895
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTCCCAGGTAGTGTCTGTAGATATTCACAGTTGACACAAAGAAA  880

seq1  ACAAAACCCACTAGAAAGGTTTGGGAACGTGCTGAGAAGGGTCCACAAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCCACTAGAAAGGTTTGGGAACGTGCTGAGAAGGGTCCACAAGA  930

seq1  AGGAGGAAGGGTTTGTTGCAAGGTTTGGCAGATCTCATAGGGAATCCACA  995
      ||||| |||| |||||||||||||||||||||||||| ||||||||||||
seq2  AGGAGAAAGGATTTGTTGCAAGGTTTGGCAGATCTCACAGGGAATCCACA  980

seq1  ATGCTATTCTATCAGGAATTCAGCCTTCCAACACTGGATGCTGTGAGAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTCTATCAGGAATTCAGCCTTCCAACACTGGATGCTGTGAGAGT  1030

seq1  GGGTGAAATGAATGGAGCCATCCTCAAGATCAAATGACTTTGTATAACTT  1095
      |  ||||||||||||||||||||||||||||||||||||| | |||||||
seq2  GAATGAAATGAATGGAGCCATCCTCAAGATCAAATGACTTCGCATAACTT  1080

seq1  TCCTAAGAGTAGTTATGTGTATTTGCGATTCCAGGATGACTTCTCTGAAA  1145
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCTAAGAGTAGTTATGTATATTTGCGATTCCAGGATGACTTCTCTGAAA  1130

seq1  GGTGAGATGCAAGTATAAAAAGAGCATATCTGCATTGTCAATAAGAATTC  1195
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATGTAAGTATAAAAAGAGCATATCTGCATTGTCAATAAGAATTC  1180