BAC Information

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BAC

Clone NameB6Ng01-090F10
Chromosome14 (Build37)
Map Location 99,273,352 - 99,418,438
singlet/doubletdoublet
Overlap geneLOC100043787
Upstream geneDach1, LOC635593, LOC619716
Downstream gene2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090F10.bB6Ng01-090F10.g
ACCDH902668DH902669
length1,0591,051
definitionDH902668|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F10, 5' end.DH902669|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,273,352 - 99,274,421)(99,417,284 - 99,418,438)
sequence
gaattcatacgaccccaaaagtagcgaaatgtctcaaagcatctgtatta
taacccaagaaaacatcaaagaaaaaccagacacaaggagcccctcaatg
tgattctgctgtgctttatgcactaaagacaacatgattcaaacttttgg
tgagattgagttcaggtcaattgaggaataaacaccaaatgctcaagtga
gagagacaacccaatacccatccatcatgaccacttaagacaatgctgga
tcactcattttgtatagctctaaccaaataccttacagaagaacctaaag
cagggagaaagaattaactagttcactgcttcttacagttgagtctatgc
tttcctggcctcatgagtgggcagaacacccatggtgttgaggacaggaa
gcagagaggaaaagaggagactgggtcaggctacacttccatctctttcc
ttcaacgaggtggcacttcctaaagtttccagaacttcctaaaatagcac
tggcagttagcattggagctagctaaggacaggtcttgttgaaaccacaa
cacacacactgttcttggggggggggcagggagggctttttgcctcacct
gaaaaaaatatttattccacacataagatatcccatgacttgactttcga
gtaaaaccaattaaacaaatctatctttaattttacaacatatttatctg
gtatggagtttctctcaactcgtttcattctgaaaaccattatctaactt
agtatataaagatcagacttcaaaagaaaaggtatgctgtaataacaatg
tgataagagaatgaatgctttgtttccattcttccaccaggtactgatgg
cactaggtagattcactggaccctatgcagcaagccacggatagcacaga
gagtcactaggaagtggacccttctctcagttttccagagatgaaacttt
ttacatggggtagactcttggcagtcattgcgattgactatataatgagc
aagggataggtcgttcgactcttgtaccaattaagacactagaagctaaa
agctcatct
gaattcttgaggaggaaatagttgatttaaatgcctgctgtcagttgcca
aagaaattgttacaaaatactgctataatgacggggaaaactgcccgctg
gtttggattccgctttgtgtgtgtgcgtgcgcgcctctctcattcatcat
cggaggtttccctctttagccagccaggtacttaaggacttctgcatacg
aggagctaaatagtactctaacatcggttttctttatgtggtctgttatc
tttacccagccagccatttcttgtgtcctttgaaactctcctgtggcatt
ccaagaatggatgtgtggtgcaggcataccatcacagttagcctgtacac
taaattattcaacaagtgcttctttagtatctggcactttcccgagctaa
gataatccaatgtgctggccagttttatgttaacttgacacaaagtgtag
tcaactgagtctccgtatatatggctgcaggcaagcccataaggccttta
cttaattagtgataggggagggactgtctctaggctgtgctcctgggttc
tagagaagcaagttgcttttggtttgcacatttcatcacagcaatagaac
ccccaaagacacacaatattacgtagtgtccttgagttagttctctggaa
tgaagccgcctgaattttaaaccctgtctccagcaggatgcctagtttgt
atgaccttcttgggtgaccattttggtaacgttagacaaattacttttca
caccagtgtaaggggtcaagaccaggatgaaacaagtcagtttttgataa
tagcttatagtaagtattgagttataatactcattacatctgcaagaagg
cagccttgtcatacggaatttatatctggagtataagataataaggatag
agttggtagtaacgtctttaatcctcgtgcctgggaacagaagggtcaat
ctcctggagttcaggccagcctagtctaagaggaaattcaggacagccaa
gctacatgtagaacacggttatcgatatctatactatcaacaaccatacc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99273352_99274421
seq2: B6Ng01-090F10.b_47_1105

seq1  GAATTCATACGACCCCAAAAGTAGCGAAATGTCTCAAAGCATCTGTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACGACCCCAAAAGTAGCGAAATGTCTCAAAGCATCTGTATTA  50

seq1  TAACCCAAGAAAACATCAAAGAAAAACCAGACACAAGGAGCCCCTCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAAGAAAACATCAAAGAAAAACCAGACACAAGGAGCCCCTCAATG  100

seq1  TGATTCTGCTGTGCTTTATGCACTAAAGACAACATGATTCAAACTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGCTGTGCTTTATGCACTAAAGACAACATGATTCAAACTTTTGG  150

seq1  TGAGATTGAGTTCAGGTCAATTGAGGAATAAACACCAAATGCTCAAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGAGTTCAGGTCAATTGAGGAATAAACACCAAATGCTCAAGTGA  200

seq1  GAGAGACAACCCAATACCCATCCATCATGACCACTTAAGACAATGCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAACCCAATACCCATCCATCATGACCACTTAAGACAATGCTGGA  250

seq1  TCACTCATTTTGTATAGCTCTAACCAAATACCTTACAGAAGAACCTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCATTTTGTATAGCTCTAACCAAATACCTTACAGAAGAACCTAAAG  300

seq1  CAGGGAGAAAGAATTAACTAGTTCACTGCTTCTTACAGTTGAGTCTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAAAGAATTAACTAGTTCACTGCTTCTTACAGTTGAGTCTATGC  350

seq1  TTTCCTGGCCTCATGAGTGGGCAGAACACCCATGGTGTTGAGGACAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGCCTCATGAGTGGGCAGAACACCCATGGTGTTGAGGACAGGAA  400

seq1  GCAGAGAGGAAAAGAGGAGACTGGGTCAGGCTACACTTCCATCTCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGGAAAAGAGGAGACTGGGTCAGGCTACACTTCCATCTCTTTCC  450

seq1  TTCAACGAGGTGGCACTTCCTAAAGTTTCCAGAACTTCCTAAAATAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACGAGGTGGCACTTCCTAAAGTTTCCAGAACTTCCTAAAATAGCAC  500

seq1  TGGCAGTTAGCATTGGAGCTAGCTAAGGACAGGTCTTGTTGAAACCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTTAGCATTGGAGCTAGCTAAGGACAGGTCTTGTTGAAACCACAA  550

seq1  CACACACACTGTTCTTGGGGGGGGGGCAGGGAGGGCTTTTTGCCTCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTGTTCTTGGGGGGGGGGCAGGGAGGGCTTTTTGCCTCACCT  600

seq1  GAAAAAAATATTTATTCCACACATAAGATATCCCATGACTTGACTTTCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATATTTATTCCACACATAAGATATCCCATGACTTGACTTTCGA  650

seq1  GTAAAACCAATTAAACAAATCTATCTTTAA-TTTACAACATATTTATCTG  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAAAACCAATTAAACAAATCTATCTTTAATTTTACAACATATTTATCTG  700

seq1  GTATGGAGTTTCTCTCAACTCGTTTCATTCTGAAAACCATTATCTAACTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGTTTCTCTCAACTCGTTTCATTCTGAAAACCATTATCTAACTT  750

seq1  AGTATATAAAGATCAGACTTCAAAAGAAAAGGTATGCTGTAATAACAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATAAAGATCAGACTTCAAAAGAAAAGGTATGCTGTAATAACAATG  800

seq1  TGATAAGAGAATGAATGCTTTG-TTCCATTCTTCCACCAGGTACTGATGG  848
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGATAAGAGAATGAATGCTTTGTTTCCATTCTTCCACCAGGTACTGATGG  850

seq1  CACTAGGTAGATTCACTGGACCCTATGCAGCAAGCCACGGATAAGCACAG  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACTAGGTAGATTCACTGGACCCTATGCAGCAAGCCACGGAT-AGCACAG  899

seq1  AGAGTCACTAGGAAGT-GACCCTTCTCTCCAGTTTTTTCAGAGATTGAAA  947
      |||||||||||||||| ||||||||||| ||| |||| |||||| |||||
seq2  AGAGTCACTAGGAAGTGGACCCTTCTCT-CAG-TTTTCCAGAGA-TGAAA  946

seq1  CATTTTACATGGGGTAGACTCTTGGCAGTCATTGCGAAATGACTATATAA  997
      | |||||||||||||||||||||||||||||||||| | |||||||||||
seq2  CTTTTTACATGGGGTAGACTCTTGGCAGTCATTGCG-ATTGACTATATAA  995

seq1  CTGAGCAAGGGATAGGTCTGTTTCGACTTCTTTGTTTCACATTTAAGACA  1047
       |||||||||||||||||   |||||| |||   | |  || ||||||||
seq2  -TGAGCAAGGGATAGGTC--GTTCGAC-TCT---TGTACCAATTAAGACA  1038

seq1  CTTAGAAGCTAAAAGGCTCATCT  1070
      | |||||||||||| ||||||||
seq2  C-TAGAAGCTAAAA-GCTCATCT  1059

seq1: chr14_99417284_99418438
seq2: B6Ng01-090F10.g_69_1119 (reverse)

seq1  TGGTATGGTTGCTGGGAATCAGACCCAGGTCTTCAGGAAGAGCAGCATGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCTTGACCACTGAGCATCCCTCCTGTTCCAAGAGCCATGGTTTTTTGT  100
                                                    | ||
seq2  ----------------------------------------------TGGT  4

seq1  TTGTTTGTTTTGTTTTTGTTTATCGATAACCGTGTTTCTACATGTAGCTT  150
       || |||||     | |   |||||||||||||| ||||||||||||| |
seq2  ATGGTTGTTGATAGTATAGATATCGATAACCGTG-TTCTACATGTAGC-T  52

seq1  TGGCTGTCCTGGAATTTGCTCTATAGACTAGGCTGGCCTTGAACTCATAG  200
      |||||||||| |||||| |||| ||||||||||||||| |||||||   |
seq2  TGGCTGTCCT-GAATTTCCTCT-TAGACTAGGCTGGCC-TGAACTCCAGG  99

seq1  AGATTTGACCACCTCTGTTTCCCAAGCACTGGGATTAAAGACGTTTACTA  250
      ||| |||||| | |||| |||||| ||||  |||||||||||| ||||||
seq2  AGA-TTGACC-CTTCTG-TTCCCAGGCACGAGGATTAAAGACG-TTACTA  145

seq1  CCAACTCTTATACCTTTATATCTTATACTTCAGATATAAATTCCGTATGA  300
      ||||||| ||| ||||  ||||||||||| ||||||||||||||||||||
seq2  CCAACTC-TAT-CCTTATTATCTTATACTCCAGATATAAATTCCGTATGA  193

seq1  CAAGGCTGCCTTCTTGCAGATGTAATGAGTATTATAACTC-ATACTTACT  349
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAGGCTGCCTTCTTGCAGATGTAATGAGTATTATAACTCAATACTTACT  243

seq1  ATGAGCTATTATCAAAAACTGACTTGTTTCATCCTGGTCTTGGACCCCTT  399
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATAAGCTATTATCAAAAACTGACTTGTTTCATCCTGGTCTT-GACCCCTT  292

seq1  ACACTGGTGTGAAAAGTAATTTGTCTAACGTTACCAAAATGGTCACCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTGTGAAAAGTAATTTGTCTAACGTTACCAAAATGGTCACCCAA  342

seq1  GAAGGTCATAC-AACTAGGCATCCTGCTGGAGACAGGG-TTAAAATTCAG  497
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  GAAGGTCATACAAACTAGGCATCCTGCTGGAGACAGGGTTTAAAATTCAG  392

seq1  GCGGCTTCATTCCAGAGAACTAACTCAAGGACACTACGTAATATTGTGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTTCATTCCAGAGAACTAACTCAAGGACACTACGTAATATTGTGTG  442

seq1  TC-TTGGGGGTTCTATTGCTGTGATGAAATGTGCAAACCAAAAGCAACTT  596
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGGGTTCTATTGCTGTGATGAAATGTGCAAACCAAAAGCAACTT  492

seq1  GCTTCTCTAGAACCCAGGAGCACAGCCTAGAGACAGTCCCTCCCCTATCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTAGAACCCAGGAGCACAGCCTAGAGACAGTCCCTCCCCTATCA  542

seq1  CTAATTAAGTAAAGGCCTTATGGGCTTGCCTGCAGCCATATATACGGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAAGTAAAGGCCTTATGGGCTTGCCTGCAGCCATATATACGGAGA  592

seq1  CTCAGTTGACTACACTTTGTGTCAAGTTAACATAAAACTGGCCAGCACAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGACTACACTTTGTGTCAAGTTAACATAAAACTGGCCAGCACAT  642

seq1  TGGATTATCTTAGCTCGGGAAAGTGCCAGATACTAAAGAAGCACTTGTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATCTTAGCTCGGGAAAGTGCCAGATACTAAAGAAGCACTTGTTG  692

seq1  AATAATTTAGTGTACAGGCTAACTGTGATGGTATGCCTGCACCACACATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTAGTGTACAGGCTAACTGTGATGGTATGCCTGCACCACACATC  742

seq1  CATTCTTGGAATGCCACAGGAGAGTTTCAAAGGACACAAGAAATGGCTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGGAATGCCACAGGAGAGTTTCAAAGGACACAAGAAATGGCTGG  792

seq1  CTGGGTAAAGATAACAGACCACATAAAGAAAACCGATGTTAGAGTACTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAAAGATAACAGACCACATAAAGAAAACCGATGTTAGAGTACTAT  842

seq1  TTAGCTCCTCGTATGCAGAAGTCCTTAAGTACCTGGCTGGCTAAAGAGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCCTCGTATGCAGAAGTCCTTAAGTACCTGGCTGGCTAAAGAGGG  892

seq1  AAACCTCCGATGATGAATGAGAGAGGCGCGCACGCACACACACAAAGCGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCGATGATGAATGAGAGAGGCGCGCACGCACACACACAAAGCGG  942

seq1  AATCCAAACCAGCGGGCAGTTTTCCCCGTCATTATAGCAGTATTTTGTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAACCAGCGGGCAGTTTTCCCCGTCATTATAGCAGTATTTTGTAA  992

seq1  CAATTTCTTTGGCAACTGACAGCAGGCATTTAAATCAACTATTTCCTCCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTTTGGCAACTGACAGCAGGCATTTAAATCAACTATTTCCTCCT  1042

seq1  CAAGAATTC  1155
      |||||||||
seq2  CAAGAATTC  1051