BAC Information

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BAC

Clone NameB6Ng01-090J03
Chromosome14 (Build37)
Map Location 29,724,419 - 29,757,098
singlet/doubletdoublet
Overlap geneCacna2d3
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218
Downstream geneLrtm1, Ppia-ps15, EG665431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090J03.bB6Ng01-090J03.g
ACCDH902833DH902834
length1,1421,111
definitionDH902833|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J03, 5' end.DH902834|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,755,938 - 29,757,098)(29,724,419 - 29,725,565)
sequence
gaattcttgtgatgtataaatgatagctgatgaagccaacacaactgctt
caggaattatagcttacagagttgcttggcagatgaaatcactgaactaa
ttagaaaataatgcattgtgctgtgcctagaaaaatcgcagagcttctta
aaggagaactgcatctgagatgggtggtttgccaggcatggctgtgagcc
ggaacaccaagctttcattattttcttcccttttttccctgcagcccaga
aactgaaacagaccctggaaccttgtgatactgaatacccagcctttgtt
tctgaacgcaccatcaaggagaccacagggaacattgcttgcgaagactg
ctccaagtaagccacccccagccccagcagcccacagcacacacctttct
attgactgtggagctttccccacggacccatgagactggagcacagacac
acaattgcactgagagccaggaaacatggctgccctctggtgtgagaata
taattttatcagccgggaaaaaagcgacccttgttttggtattcttttaa
gattgggaaatgttcagaatgtataactatacagcctggagtatagaaga
gtttagttcaatatgttgctatttggaggaagtcctaactggtgtttcct
cagctaacaattgacaactcagcaaatgtacttagatgtgtttagagagg
acagagcccttgtgtatgcctgaatcccacctacaagtcatggtctaatg
atgaacagatttctatctggtctgatgttgagcatctaaggtctgatgat
gaacagatagtaacaggttcattgatcatttagaaacttgggtctctgtt
cctcttgggtgggtggctactgaatagttgggtccattttattgatttag
gtattcggtgcctccaagactatgttgttaataactacagacactttcta
tgcgtcatcctgctcttgatcaatcactattggtggatgactctgatgat
gtaagctttctttggtaatatttaataaaagtccgctttgtctttctgtt
ttatgcttgtgtaccattcaagaaagtcttttactttctagccagcgttt
tgcattttcttgaccattcgtgcatgcttgtttgtatttcga
gaattccatggcacgtgcaagcatgaaatcggtgaggctcgtggagaagt
ggagaagaaactgctttgttgcaaatagggatctgcccaatagccacaga
taccatcttagcttagctagcagctgagcccatgatcctctcagaagcct
tgagtcactgtgtgcctcagtagatggaagactccctgccattcagcaca
ctgagctttagaatgatcggtaccgtagacatcaactcaaaatcttcctg
ctatgttccctacagaaactaggatggccaccacttgtgctttcctacac
agggtactaactggtttccttacctttattaaagcaggtaagggtgttat
agtccccagtattagctatctcctaatggaacctcggtagggtccttcac
ataatacacaaccaccatccacaatgaccagtgctatagatgccagtgag
gcctgagctcattccatctcattctggttggatgtagcacagacccaatc
atctctcatatttttcttcagagtctcagagaaggtctcagtctatgata
gttggcactacaatacctggcatttctttctctgagagaccaaagaacag
agctctccagatcccactccacagagatgtggcagctattgccccaagcc
ctcctccagcaccaagtcaagcaactatcttccaaaactgctacaggcaa
ggttagatcatggagacagacaacactgagatcacctgaagccggaggag
tcccacagtattacctttcatctctcctataaccaaatccgaagcctctg
taactcattaaactgttttcaatgcagagaacaacagagatcaatacaaa
tatactactatgacacatccaaaggaggacaaaattatccagcaaagtgg
tagtagccatactagccttagagatgtgttttaggggtaatcttcagtaa
ttatgcagactataaataatatgatagtttgagtcacatccctgaagaag
aaagagtagttattaatatatttatgtaactgatgatccagtagaaatat
ctagagctatctcagtcctcctatctattcaaagtggatgagaattgtcg
tatcttattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29755938_29757098
seq2: B6Ng01-090J03.b_44_1185 (reverse)

seq1  TCGAAATACAAAC-AGCATGCACGAATGTGTTCAGAAGAAAAATGCAAAC  49
      ||||||||||||| |||||||||||||| ||  ||    |||||||||| 
seq2  TCGAAATACAAACAAGCATGCACGAATG-GTCAAG----AAAATGCAAA-  44

seq1  ACTGCTGGGCTAGGAAAGGTAAAGACTTTCTTTGGAATGGTACACAAAGC  99
      || ||| ||||| |||||  ||||||||||||  ||||||||||| ||||
seq2  AC-GCT-GGCTA-GAAAGTAAAAGACTTTCTT--GAATGGTACAC-AAGC  88

seq1  ATAAAACAGAAAAGGACAAAGCGGACTATATTAAAATATAACCAAAGGAA  149
      ||||||||||||  ||||||||||||| |  | |||||| |||||| |||
seq2  ATAAAACAGAAA--GACAAAGCGGACTTTTATTAAATATTACCAAA-GAA  135

seq1  AGCTTACATTCATCAAGAGTCATCCACCAATAGTGAATTGATCAAAGAGC  199
      |||||||| ||||| |||||||||||||||||||| ||||||| ||||||
seq2  AGCTTACA-TCATC-AGAGTCATCCACCAATAGTG-ATTGATC-AAGAGC  181

seq1  AGGATGACGCATAGAAAGTGTCTGTAGTTATTAACAACATAGTCTTGGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACGCATAGAAAGTGTCTGTAGTTATTAACAACATAGTCTTGGAG  231

seq1  GCACCGAATACCTAAATCAATAAAAATGGACCCAACTATTCAGTAGCCAC  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCACCGAATACCTAAATCAAT-AAAATGGACCCAACTATTCAGTAGCCAC  280

seq1  CCACCCAAGAGGAACAGAGACCCAAGTTTCTAAATGATCAATGAACCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAAGAGGAACAGAGACCCAAGTTTCTAAATGATCAATGAACCTGT  330

seq1  TACTATCTGTTCATCATCAGACCTTAGATGCTCAACATCAGACCAGATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTGTTCATCATCAGACCTTAGATGCTCAACATCAGACCAGATAG  380

seq1  AAATCTGTTCATCATTAGACCATGACTTGTAGGTGGGATTCAGGCATACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTTCATCATTAGACCATGACTTGTAGGTGGGATTCAGGCATACA  430

seq1  CAAGGGCTCTGTCCTCTCTAAACACATCTAAGTACATTTGCTGAGTTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTCTGTCCTCTCTAAACACATCTAAGTACATTTGCTGAGTTGTC  480

seq1  AATTGTTAGCTGAGGAAACACCAGTTAGGACTTCCTCCAAATAGCAACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTAGCTGAGGAAACACCAGTTAGGACTTCCTCCAAATAGCAACAT  530

seq1  ATTGAACTAAACTCTTCTATACTCCAGGCTGTATAGTTATACATTCTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTAAACTCTTCTATACTCCAGGCTGTATAGTTATACATTCTGAA  580

seq1  CATTTCCCAATCTTAAAAGAATACCAAAACAAGGGTCGCTTTTTTCCCGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCAATCTTAAAAGAATACCAAAACAAGGGTCGCTTTTTTCCCGG  630

seq1  CTGATAAAATTATATTCTCACACCAGAGGGCAGCCATGTTTCCTGGCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAATTATATTCTCACACCAGAGGGCAGCCATGTTTCCTGGCTCT  680

seq1  CAGTGCAATTGTGTGTCTGTGCTCCAGTCTCATGGGTCCGTGGGGAAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAATTGTGTGTCTGTGCTCCAGTCTCATGGGTCCGTGGGGAAAGC  730

seq1  TCCACAGTCAATAGAAAGGTGTGTGCTGTGGGCTGCTGGGGCTGGGGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTCAATAGAAAGGTGTGTGCTGTGGGCTGCTGGGGCTGGGGGTG  780

seq1  GCTTACTTGGAGCAGTCTTCGCAAGCAATGTTCCCTGTGGTCTCCTTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTTGGAGCAGTCTTCGCAAGCAATGTTCCCTGTGGTCTCCTTGAT  830

seq1  GGTGCGTTCAGAAACAAAGGCTGGGTATTCAGTATCACAAGGTTCCAGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGTTCAGAAACAAAGGCTGGGTATTCAGTATCACAAGGTTCCAGGG  880

seq1  TCTGTTTCAGTTTCTGGGCTGCAGGGAAAAAAGGGAAGAAAATAATGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCAGTTTCTGGGCTGCAGGGAAAAAAGGGAAGAAAATAATGAAA  930

seq1  GCTTGGTGTTCCGGCTCACAGCCATGCCTGGCAAACCACCCATCTCAGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGTTCCGGCTCACAGCCATGCCTGGCAAACCACCCATCTCAGAT  980

seq1  GCAGTTCTCCTTTAAGAAGCTCTGCGATTTTTCTAGGCACAGCACAATGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTCCTTTAAGAAGCTCTGCGATTTTTCTAGGCACAGCACAATGC  1030

seq1  ATTATTTTCTAATTAGTTCAGTGATTTCATCTGCCAAGCAACTCTGTAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCTAATTAGTTCAGTGATTTCATCTGCCAAGCAACTCTGTAAG  1080

seq1  CTATAATTCCTGAAGCAGTTGTGTTGGCTTCATCAGCTATCATTTATACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTCCTGAAGCAGTTGTGTTGGCTTCATCAGCTATCATTTATACA  1130

seq1  TCACAAGAATTC  1161
      ||||||||||||
seq2  TCACAAGAATTC  1142

seq1: chr14_29724419_29725565
seq2: B6Ng01-090J03.g_69_1179

seq1  GAATTCCATGGCACGTGCAAGCATGAAATCGGTGAGGCTCGTGGAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGCACGTGCAAGCATGAAATCGGTGAGGCTCGTGGAGAAGT  50

seq1  GGAGAAGAAACTGCTTTGTTGCAAATAGGGATCTGCCCAATAGCCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAAACTGCTTTGTTGCAAATAGGGATCTGCCCAATAGCCACAGA  100

seq1  TACCATCTTAGCTTAGCTAGCAGCTGAGCCCATGATCCTCTCAGAAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTTAGCTTAGCTAGCAGCTGAGCCCATGATCCTCTCAGAAGCCT  150

seq1  TGAGTCACTGTGTGCCTCAGTAGATGGAAGACTCCCTGCCATTCAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACTGTGTGCCTCAGTAGATGGAAGACTCCCTGCCATTCAGCACA  200

seq1  CTGAGCTTTAGAATGATCGGTACCGTAGACATCAACTCAAAATCTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTTAGAATGATCGGTACCGTAGACATCAACTCAAAATCTTCCTG  250

seq1  CTATGTTCCCTACAGAAACTAGGATGGCCACCACTTGTGCTTTCCTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTCCCTACAGAAACTAGGATGGCCACCACTTGTGCTTTCCTACAC  300

seq1  AGGGTACTAACTGGTTTCCTTACCTTTATTAAAGCAGGTAAGGGTGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACTAACTGGTTTCCTTACCTTTATTAAAGCAGGTAAGGGTGTTAT  350

seq1  AGTCCCCAGTATTAGCTATCTCCTAATGGAACCTCGGTAGGGTCCTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCAGTATTAGCTATCTCCTAATGGAACCTCGGTAGGGTCCTTCAC  400

seq1  ATAATACACAACCACCATCCACAATGACCAGTGCTATAGATGCCAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACACAACCACCATCCACAATGACCAGTGCTATAGATGCCAGTGAG  450

seq1  GCCTGAGCTCATTCCATCTCATTCTGGTTGGATGTAGCACAGACCCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGCTCATTCCATCTCATTCTGGTTGGATGTAGCACAGACCCAATC  500

seq1  ATCTCTCATATTTTTCTTCAGAGTCTCAGAGAAGGTCTCAGTCTATGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCATATTTTTCTTCAGAGTCTCAGAGAAGGTCTCAGTCTATGATA  550

seq1  GTTGGCACTACAATACCTGGCATTTCTTTCTCTGAGAGACCAAAGAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCACTACAATACCTGGCATTTCTTTCTCTGAGAGACCAAAGAACAG  600

seq1  AGCTCTCCAGATCCCACTCCACAGAGATGTGGCAGCTATTGCCCCAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCAGATCCCACTCCACAGAGATGTGGCAGCTATTGCCCCAAGCC  650

seq1  CTCCTCCAGCACCAAGTCAAGCAACTATCTTCCAAAACTGCTACAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCAGCACCAAGTCAAGCAACTATCTTCCAAAACTGCTACAGGCAA  700

seq1  GGTTAGATCATGGAGACAGACAACACTGAGATCACCTGAAGCCGGAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGATCATGGAGACAGACAACACTGAGATCACCTGAAGCCGGAGGAG  750

seq1  TCCCACAGTATTACCTTTCATCTCTCCTATAACCAAATCCGAAGCCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGTATTACCTTTCATCTCTCCTATAACCAAATCCGAAGCCTCTG  800

seq1  TAACTCATTAAACTGTTTTCAATGCAGAGAACAACAGAGATCAATACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATTAAACTGTTTTCAATGCAGAGAACAACAGAGATCAATACAAA  850

seq1  TATACTACTATGACACATCCAAAGGAGGACAAAAATTATCCAGCAAAGTG  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATACTACTATGACACATCCAAAGGAGGAC-AAAATTATCCAGCAAAGTG  899

seq1  GTAGTAGCCATACTAGCCTTAGAGATGTGTATTAGGGGTAATCTTCCAGT  950
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  GTAGTAGCCATACTAGCCTTAGAGATGTGTTTTAGGGGTAATCTT-CAGT  948

seq1  AATTATGCAGAACCTAATAAATAAATATGATAGTTTGAGTCACATTCCCT  1000
      |||||||||||  || |||||| ||||||||||||||||||||||  || 
seq2  AATTATGCAGA--CT-ATAAAT-AATATGATAGTTTGAGTCACAT--CCC  992

seq1  TGAAGAAAGACAGGAGTAAGTTTATTAAATATTATTTTATGTATACTGAT  1050
      ||||| |||| | |||||   ||||| |||||   |||||||| ||||||
seq2  TGAAG-AAGA-AAGAGTA--GTTATT-AATAT--ATTTATGTA-ACTGAT  1034

seq1  GATCCCAAGTAGAAATATCTAAGGAAGGCTAATCTCAGTTCTTCTTAATC  1100
      |||||  ||||||||||||||  ||  ||| |||||||| || ||  |||
seq2  GATCC--AGTAGAAATATCTA--GA--GCT-ATCTCAGTCCTCCT--ATC  1075

seq1  TATTCCAAAAGTTGGGATGGAAGAAATTTTGTCGTAATCTTTATTAT  1147
      |||||  |||||  |||||  ||||   ||||||| ||| |||||||
seq2  TATTC--AAAGT--GGATG--AGAA---TTGTCGT-ATC-TTATTAT  1111