BAC Information

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BAC

Clone NameB6Ng01-090K06
Chromosome14 (Build37)
Map Location 66,440,097 - 66,601,316
singlet/doubletdoublet
Overlap geneEsco2, Ccdc25, Scara3, Clu
Upstream geneHmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk
Downstream geneGulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090K06.bB6Ng01-090K06.g
ACCDH902885DH902886
length1,222876
definitionDH902885|Mus musculus domesticus DNA, BAC clone: B6Ng01-090K06, 5' end.DH902886|Mus musculus domesticus DNA, BAC clone: B6Ng01-090K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,600,046 - 66,601,316)(66,440,097 - 66,440,969)
sequence
gaattccttgggtttcttcatctgatatttactagcttcagaactaataa
ctaaatgccctctgtcattcactatggcttctctcaacttctgcagataa
cacactagatgtgcgccatagggatgtagactatggctggacagcgtcac
ctgctggcagcacctggtactgcagctaacttaacagttcagggtgagca
gtgaactaaaaagcagtgaactaaaaaccatgaaagcagagagataaaca
accaataaaggggtatagactgtatggaaggacggtgatgtgagatgcca
tgattcagaaggtgccccaggtttccgagttcttacaaataaaatcttca
tgtggcttcctgctgatcagtttcctcagggaattgtcagttacacagta
aaacacccacttgtcccactagcagcctcctttgcctcgatgtcagtgcc
tcctctgggagaccgctccaccttgtcagaactcacagacagtgttgtaa
cgggaagggaaagtctctgacttcaggaattcacctccgtggctcattgg
aacatacctctctcaaagctgaaggtgccccaattgtcatgagtactcta
cagtgtatggagacccctatatagtctcagctgttcatttttatatgcat
gacctcgtgtcgctctttggtctctttctacccatgtgttctgagacaag
atctctcactggaacctgaggctcaccgaacaccagcaagttcctctttc
ctctgttctgatagcgccgaggttaaattacaagagggtgccaccatgcc
tgacttttccaaactcatgttcgtgtggcaagtgctttagcaactgaccc
ggctattatccttgtttcccctccataccaaaccaagatgtgcagcctgc
agaggattaaataaaaaacagacccaagggacacgtatcgcaaggcggct
tttattggattagttgcgtgggggaatcagttcttcccgagagcagcaag
tgcagcattagtgtacagatcagagatggcagctgctggtgagcttactc
gcctgagaaatgtgagtctctaggtctgcagcactcgggagctggagatt
ccctcccagacctcctacatagagtgatgcttctatctcatccgactgaa
aaaaagagaaagtggctaagaatcgatccagtgaagcccgcctagcctat
ccttaccatcaggaacatttcc
gaattccaggacagccaggggtatacagagaaaccctgtctcaaaagaca
gacagagaaagagagagggagggaggaggaggaaggaaggaaggaagaaa
aaaaaaaggcaagaggaaaagaatgaaggaattacacttaagtttagcat
ggaatgtatatcaagtatttccttctaatgttaacatctgccttagtctg
acttttacagtatttataaaaaagtattttagtaaaattctgttttgctc
gtgagccaaggaaggttctggaaaagctaacaagtcattgtacaaggtct
aaagcttttctgtctccttacctgacagtgtcaaccagtcgtcttgcaat
gcgcttccttctttttagtctgaagacccagattctacttattccacaaa
ttgcaggttctggtacatctgaacaccgccaagctctagaacattcttta
ctggcacttggttctgacaggacccgaaaggcctgcaatgacacatagac
gagctgacttttcttttaaaaagcaaacaaaaatccaaactttaaacaaa
gcctgattatagttaatctataaaaaataatgctctgttactccttaaat
catatttatgatatgagtgttctttctgcatgtatgtatgtgcaggttgt
gcttgatttctgcagaggttagagaaggtactagatccccctacaactaa
tgggtcatgaaccccaggttgaaattaaacttagaaacctttcagcacaa
gaaaggataccacatgggggaaagacaacttatgagaaattatctataat
tttgcatacgcagaacgtttgagtctaaaataaacaatgaactcactgat
agccaaaaataaccccaaattttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66600046_66601316
seq2: B6Ng01-090K06.b_49_1270 (reverse)

seq1  GGAAATGTTTTTCCTTGATGGTTAAGGATGTGGGTGTTGGCGGCTGCTTC  50
      |||||||||    | |||||| |||||||    |  | |||||  |||||
seq2  GGAAATGTT----CCTGATGG-TAAGGAT---AGGCTAGGCGG--GCTTC  40

seq1  TTGGGGGATACTGATTC---TCTTATCCACTCTCCTCTTTTTTTTTTTCA  97
               ||||  ||   ||||| ||||| | ||||||||||      
seq2  ---------ACTGGATCGATTCTTAGCCACT-TTCTCTTTTTTT-----C  75

seq1  AGTGCGGAATGAGATAGAAGCATCACCTTCCTATATGTAGGAGTGTCTGG  147
      ||| ||| |||||||||||||||||     || |||||||||| ||||||
seq2  AGT-CGG-ATGAGATAGAAGCATCA-----CTCTATGTAGGAG-GTCTGG  117

seq1  GAGGGAATCTCCCAGCTCCCCGAGGTGGCTGCAGACCCCTAGAGAACTCC  197
      |||||||||| |||||| ||||||   ||||||||  ||||||| ||| |
seq2  GAGGGAATCT-CCAGCT-CCCGAG--TGCTGCAGA--CCTAGAG-ACT-C  159

seq1  ACATGTCTCCAGGCGAGTAGGCCTCACCCAAGCAGCCTGCCCTTCCTCTG  247
      |||| ||| |||||||||| | ||||||  ||||| ||||| |  |||||
seq2  ACATTTCT-CAGGCGAGTAAG-CTCACC--AGCAG-CTGCCAT--CTCTG  202

seq1  GATTCTGTACACTAATGCCTGCACTTGCTGCTCTCGGGAAGAACTGATTC  297
         |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  --ATCTGTACACTAATG-CTGCACTTGCTGCTCTCGGGAAGAACTGATTC  249

seq1  CCCCACGCAACTAATCCAATAAAAGCCGCCTTGCGATACGTGTCCCTTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACGCAACTAATCCAATAAAAGCCGCCTTGCGATACGTGTCCCTTGG  299

seq1  GTCTGTTTTTTATTTAATCCTCCTGCAGGCTGCACATCTTGGTTTGGTAT  397
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTCTGTTTTTTATTTAATCCT-CTGCAGGCTGCACATCTTGGTTTGGTAT  348

seq1  GGAGGGGAAACAAGGATAATAGCCGGGTCAGTTGCTAAAGCACTTGCCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAAACAAGGATAATAGCCGGGTCAGTTGCTAAAGCACTTGCCAC  398

seq1  ACGAACATGAGTTTGGAAAAGTCAGGCATGGTGGCACCCTCTTGTAATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACATGAGTTTGGAAAAGTCAGGCATGGTGGCACCCTCTTGTAATTT  448

seq1  AACCTCGGCGCTATCAGAACAGAGGAAAGAGGAACTTGCTGGTGTTCGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCGGCGCTATCAGAACAGAGGAAAGAGGAACTTGCTGGTGTTCGGT  498

seq1  GAGCCTCAGGTTCCAGTGAGAGATCTTGTCTCAGAACACATGGGTAGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCAGGTTCCAGTGAGAGATCTTGTCTCAGAACACATGGGTAGAAA  548

seq1  GAGACCAAAGAGCGACACGAGGTCATGCATATAAAAATGAACAGCTGAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAAAGAGCGACACGAGGTCATGCATATAAAAATGAACAGCTGAGA  598

seq1  CTATATAGGGGTCTCCATACACTGTAGAGTACTCATGACAATTGGGGCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGGGGTCTCCATACACTGTAGAGTACTCATGACAATTGGGGCAC  648

seq1  CTTCAGCTTTGAGAGAGGTATGTTCCAATGAGCCACGGAGGTGAATTCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTTGAGAGAGGTATGTTCCAATGAGCCACGGAGGTGAATTCCT  698

seq1  GAAGTCAGAGACTTTCCCTTCCCGTTACAACACTGTCTGTGAGTTCTGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGAGACTTTCCCTTCCCGTTACAACACTGTCTGTGAGTTCTGAC  748

seq1  AAGGTGGAGCGGTCTCCCAGAGGAGGCACTGACATCGAGGCAAAGGAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGAGCGGTCTCCCAGAGGAGGCACTGACATCGAGGCAAAGGAGGC  798

seq1  TGCTAGTGGGACAAGTGGGTGTTTTACTGTGTAACTGACAATTCCCTGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGGGACAAGTGGGTGTTTTACTGTGTAACTGACAATTCCCTGAG  848

seq1  GAAACTGATCAGCAGGAAGCCACATGAAGATTTTATTTGTAAGAACTCGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGATCAGCAGGAAGCCACATGAAGATTTTATTTGTAAGAACTCGG  898

seq1  AAACCTGGGGCACCTTCTGAATCATGGCATCTCACATCACCGTCCTTCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGGGCACCTTCTGAATCATGGCATCTCACATCACCGTCCTTCCA  948

seq1  TACAGTCTATACCCCTTTATTGGTTGTTTATCTCTCTGCTTTCATGGTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTATACCCCTTTATTGGTTGTTTATCTCTCTGCTTTCATGGTTT  998

seq1  TTAGTTCACTGCTTTTTAGTTCACTGCTCACCCTGAACTGTTAAGTTAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCACTGCTTTTTAGTTCACTGCTCACCCTGAACTGTTAAGTTAGC  1048

seq1  TGCAGTACCAGGTGCTGCCAGCAGGTGACGCTGTCCAGCCATAGTCTACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTACCAGGTGCTGCCAGCAGGTGACGCTGTCCAGCCATAGTCTACA  1098

seq1  TCCCTATGGCGCACATCTAGTGTGTTATCTGCAGAAGTTGAGAGAAGCCA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATGGCGCACATCTAGTGTGTTATCTGCAGAAGTTGAGAGAAGCCA  1148

seq1  TAGTGAATGACAGAGGGCATTTAGTTATTAGTTCTGAAGCTAGTAAATAT  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATGACAGAGGGCATTTAGTTATTAGTTCTGAAGCTAGTAAATAT  1198

seq1  CAGATGAAGAAACCCAAGGAATTC  1271
      ||||||||||||||||||||||||
seq2  CAGATGAAGAAACCCAAGGAATTC  1222

seq1: chr14_66440097_66440969
seq2: B6Ng01-090K06.g_71_946

seq1  GAATTCCAGGACAGCCAGGGGTATACAGAGAAACCCTGTCTCAAAAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGGTATACAGAGAAACCCTGTCTCAAAAGACA  50

seq1  GACAGAGAAAGAGAGAGGGAGGGAGGAGGAGGAAGGAAGGAAGGAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAAAGAGAGAGGGAGGGAGGAGGAGGAAGGAAGGAAGGAAGAAA  100

seq1  AAAAAAAGGCAAGAGGAAAAGAATGAAGGAATTACACTTAAGTTTAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGCAAGAGGAAAAGAATGAAGGAATTACACTTAAGTTTAGCAT  150

seq1  GGAATGTATATCAAGTATTTCCTTCTAATGTTAACATCTGCCTTAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTATATCAAGTATTTCCTTCTAATGTTAACATCTGCCTTAGTCTG  200

seq1  ACTTTTACAGTATTTATAAAAAAGTATTTTAGTAAAATTCTGTTTTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACAGTATTTATAAAAAAGTATTTTAGTAAAATTCTGTTTTGCTC  250

seq1  GTGAGCCAAGGAAGGTTCTGGAAAAGCTAACAAGTCATTGTACAAGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCAAGGAAGGTTCTGGAAAAGCTAACAAGTCATTGTACAAGGTCT  300

seq1  AAAGCTTTTCTGTCTCCTTACCTGACAGTGTCAACCAGTCGTCTTGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTCTGTCTCCTTACCTGACAGTGTCAACCAGTCGTCTTGCAAT  350

seq1  GCGCTTCCTTCTTTTTAGTCTGAAGACCCAGATTCTACTTATTCCACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTCCTTCTTTTTAGTCTGAAGACCCAGATTCTACTTATTCCACAAA  400

seq1  TTGCAGGTTCTGGTACATCTGAACACCGCCAAGCTCTAGAACATTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTTCTGGTACATCTGAACACCGCCAAGCTCTAGAACATTCTTTA  450

seq1  CTGGCACTTGGTTCTGACAGGACCCGAAAGGCCTGCAATGACACATAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACTTGGTTCTGACAGGACCCGAAAGGCCTGCAATGACACATAGAC  500

seq1  GAGCTGACTTTTCTTTTAAAAAGCAAACAAAAATCCAAACTTTAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGACTTTTCTTTTAAAAAGCAAACAAAAATCCAAACTTTAAACAAA  550

seq1  GCCTGATTATAGTTAATCTATAAAAAATAATGCTCTGTTACTCCTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATTATAGTTAATCTATAAAAAATAATGCTCTGTTACTCCTTAAAT  600

seq1  CATATTTATGATATGAGTGTTCTTTCTGCATGTATGTATGTGCAGGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTATGATATGAGTGTTCTTTCTGCATGTATGTATGTGCAGGTTGT  650

seq1  GCTTGATTTCTGCAGAGGTTAGAGAAGGTACTAGAT-CCCCTACAACTAA  699
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTTGATTTCTGCAGAGGTTAGAGAAGGTACTAGATCCCCCTACAACTAA  700

seq1  T-GGTCATGAACCCCAGGTTGAAATTAAAC-TAGAAACC-TTCAGCACAA  746
      | |||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TGGGTCATGAACCCCAGGTTGAAATTAAACTTAGAAACCTTTCAGCACAA  750

seq1  GAAAGGATACAACAT-GGGGAAAGACAACTTAGGAGAAAATATCTATAA-  794
      |||||||||| |||| |||||||||||||||| |||||| ||||||||| 
seq2  GAAAGGATACCACATGGGGGAAAGACAACTTATGAGAAATTATCTATAAT  800

seq1  TTTGCATACGTCAGAAGGTTAGAGTCTAAAATATACAAGGAACTCAACTG  844
      |||||||||| ||||| ||| |||||||||||| |||| |||||| ||||
seq2  TTTGCATACG-CAGAACGTTTGAGTCTAAAATAAACAATGAACTC-ACTG  848

seq1  AATAGCAAAAAAATAACCCAAATTTTAAA  873
       ||||| |||||  | |||||||||||||
seq2  -ATAGCCAAAAATAACCCCAAATTTTAAA  876