BAC Information

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BAC

Clone NameB6Ng01-092G09
Chromosome14 (Build37)
Map Location 109,335,363 - 109,336,541
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092G09.bB6Ng01-092G09.g
ACCDH904170DH904171
length1,1741,151
definitionDH904170|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G09, 5' end.DH904171|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccccccttcctatactgtatatagtaacctgaaattctatgaat
accagtcagtaggtttcgagcttcaatttaagcactgattgtcatttttt
catgttcaaagacataagtatgtcttgtctttatcaaaagtgtctttcca
ttaagttgtaaaaaataacctatagtgctgtcaatatactgaaatgctta
agtgagtttgttgaagccctttggccaattaccatttcttatactggggc
atttattaatgtcactatatctttctgtagatactccaagttttgcttag
aagtgagtaagttattaccacttatacttatcatggcaagaaactgtgtt
catttctgttctgaactccaccttactagtaaaacatcagcataatttaa
taatctgttgctctttgccatgtctccgttattctacctcatgaacatag
tttgagttatctgtccttataagtttaatcagcccttaatatttctttga
catgcttctgtgtgttgaattgactttttatatttttattgaatatttta
tttatttacatttaaatgttatccctttccaagtttcccctccagaaact
ctgtatcacaacacccctttcctgtttcaatgagtgtgatccccccaccc
atccacccactcctgcctctctgccctggcattcacttacattggggcat
cgatctttcttggaccaaggacctttccattgatgcctgacaaggccatc
atctgatacatatgaggctggagccatgtgtcactccatgagtactctct
gattggtgatttcatcccttggagttctaggggtatgatttcttgatata
gttgttcttcctatggggttgcaaagcccttcagttccttcccaagggga
tattcttgtgtccccatcaagtccttgttatttgcttctctgggtctgta
gattatacatgagtgtcttttattttacacctaataaccacttatagtga
gtacatatatggtttgttttctttggttgtcttactttactgaggttgat
tttttttctagttccatccattggtccaatttcatgggttctttccttct
agagctgaattgtgtaaaggctgagatgtctgggagctagtggagtgaaa
ggtacacatttctatatcaccatt
gaattcaaaggccagaaacgtcaaaaaaatgttgaaacagacattattta
aaaatatgataaaaatattttataataatttaagatttataaattgagat
gtgtttattttgtgtagtataatacaataattaaattataattaagttat
aaaatgataatgggcatatatttattttaagatcagtataattaatgtat
ctgtcaggctcatttgcaattcatttatttagtacctgataccgtcttgt
atgaaagctggagaaactttgccatggcatctgaaggtttcttcaatcct
ctctcatcttacacagtgtaatggcaaatccatcagcatctatacattat
ccctaaatggttcattttcaatctcattttgtatggttgtttttgactta
caaattagtaagaactctcagttcctactgcccttcttttctggtgatat
cttcctgttggccactggctactaggctggtagccttactggaacaaaaa
tatctgtattttgcattactgctatttatataattgttgctttaaaaaag
ttccagatactgctatccagtctctcagtcattgtctttgaaaggtcaga
cactctcatagacatacaatcatggcttatttgaccattacaagtagagc
ctactgcttgaacaacaaaacaggaacaaaggaaatgttctactttacct
gtgatacatacacataaactatacatccacataaaatgatttacagaaaa
tcttaaaccacagtttcagatttaaaaattggatatttatatataaaaaa
ggaattgtgtatacaatggttaaaaacaaagcagaattagcagcctagaa
atgagtcctgtattattttcagagcttttatgattcgaagcagaagatac
atcagagggactgctgagcaggcaggtctcttctacagttacaccaatgc
aatagcatctagtgaacttcattttattaattatctttcaatgatttgca
tttttgtaacaatgcatgtaaggacaagactgtaaactattacttatatg
acaagtttaatactacaaaatagggttcgagcctcacagtgaaattagct
tcatttttggtcaattgaaattttcttaagttccagcatatttccatgtt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109335363_109336541
seq2: B6Ng01-092G09.g_68_1218

seq1  GAATTCAAAGGCCAGAAACGTCAAAAAAATGTTGAAACAGACATTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGCCAGAAACGTCAAAAAAATGTTGAAACAGACATTATTTA  50

seq1  AAAATATGATAAAAATATTTTATAATAATTTAAGATTTATAAATTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGATAAAAATATTTTATAATAATTTAAGATTTATAAATTGAGAT  100

seq1  GTGTTTATTTTGTGTAGTATAATACAATAATTAAATTATAATTAAGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATTTTGTGTAGTATAATACAATAATTAAATTATAATTAAGTTAT  150

seq1  AAAATGATAATGGGCATATATTTATTTTAAGATCAGTATAATTAATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATAATGGGCATATATTTATTTTAAGATCAGTATAATTAATGTAT  200

seq1  CTGTCAGGCTCATTTGCAATTCATTTATTTAGTACCTGATACCGTCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGCTCATTTGCAATTCATTTATTTAGTACCTGATACCGTCTTGT  250

seq1  ATGAAAGCTGGAGAAACTTTGCCATGGCATCTGAAGGTTTCTTCAATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCTGGAGAAACTTTGCCATGGCATCTGAAGGTTTCTTCAATCCT  300

seq1  CTCTCATCTTACACAGTGTAATGGCAAATCCATCAGCATCTATACATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCTTACACAGTGTAATGGCAAATCCATCAGCATCTATACATTAT  350

seq1  CCCTAAATGGTTCATTTTCAATCTCATTTTGTATGGTTGTTTTTGACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAATGGTTCATTTTCAATCTCATTTTGTATGGTTGTTTTTGACTTA  400

seq1  CAAATTAGTAAGAACTCTCAGTTCCTACTGCCCTTCTTTTCTGGTGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGTAAGAACTCTCAGTTCCTACTGCCCTTCTTTTCTGGTGATAT  450

seq1  CTTCCTGTTGGCCACTGGCTACTAGGCTGGTAGCCTTACTGGAACAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTTGGCCACTGGCTACTAGGCTGGTAGCCTTACTGGAACAAAAA  500

seq1  TATCTGTATTTTGCATTACTGCTATTTATATAATTGTTGCTTTAAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTATTTTGCATTACTGCTATTTATATAATTGTTGCTTTAAAAAAG  550

seq1  TTCCAGATACTGCTATCCAGTCTCTCAGTCATTGTCTTTGAAAGGTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATACTGCTATCCAGTCTCTCAGTCATTGTCTTTGAAAGGTCAGA  600

seq1  CACTCTCATAGACATACAATCATGGCTTATTTGACCATTACAAGTAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATAGACATACAATCATGGCTTATTTGACCATTACAAGTAGAGC  650

seq1  CTACTGCTTGAACAACAAAACAGGAACAAAGGAAATGTTCTACTTTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTTGAACAACAAAACAGGAACAAAGGAAATGTTCTACTTTACCT  700

seq1  GTGATACATACACATAAACTATACATCCACATAAAATGATTTACAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACATACACATAAACTATACATCCACATAAAATGATTTACAGAAAA  750

seq1  TCTTAAACCACAGTTTCAGATTTAAAAATTGGATATTTATATATAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACCACAGTTTCAGATTTAAAAATTGGATATTTATATATAAAAAA  800

seq1  GGAATTGTGTATACAATGGTTAAAAACAAAGCAGAATTTAGCAGCCTAGA  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGAATTGTGTATACAATGGTTAAAAACAAAGCAGAA-TTAGCAGCCTAGA  849

seq1  AATGAGTCCTGTATTATTTTCAGAGC-TTTATGATTCGAAGCAGAAGATA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATGAGTCCTGTATTATTTTCAGAGCTTTTATGATTCGAAGCAGAAGATA  899

seq1  CATCAGAGGGACTGCTGAGCAGGGCAAGGTCTCTTCTACAGTTACAACCA  949
      |||||||||||||||||||||||   ||||||||||||||||||| ||||
seq2  CATCAGAGGGACTGCTGAGCAGG--CAGGTCTCTTCTACAGTTAC-ACCA  946

seq1  ATGCAATTAGCATCTAGTTGAAACTTCATTTTATTAATTATTCTTTCAAT  999
      |||||| |||||||||||   ||||||||||||||||||| |||||||||
seq2  ATGCAA-TAGCATCTAGT--GAACTTCATTTTATTAATTA-TCTTTCAAT  992

seq1  GATTTGCATTTTTGTAACACATGCATGTAAGGACAAAGACTGTAAACTAG  1049
      ||||||||||||||||||| |||||||||||||| |||||||||||||| 
seq2  GATTTGCATTTTTGTAACA-ATGCATGTAAGGAC-AAGACTGTAAACTA-  1039

seq1  TAACTTATATGACAAGTTTAATACATACAAAAATTAGGGTTCAAGCCTCA  1099
      | |||||||||||||||||||||| |||||||  |||||||| |||||| 
seq2  TTACTTATATGACAAGTTTAATAC-TACAAAA--TAGGGTTCGAGCCTC-  1085

seq1  ACAGTTGAAATATTAAGCTTCATTTTTTTGGTCAAATTGTAATTTTTCTT  1149
      |||| |||||   | |||||||  ||||||||| ||||| || |||||||
seq2  ACAG-TGAAA---TTAGCTTCA--TTTTTGGTC-AATTG-AAATTTTCTT  1127

seq1  TAAAGTTTCTAGTCATTATTTCCATTGTTC  1179
        ||| ||| || || |||||||| |||||
seq2  --AAG-TTCCAG-CA-TATTTCCA-TGTTC  1151