BAC Information

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BAC

Clone NameB6Ng01-092I05
Chromosome14 (Build37)
Map Location 48,333,787 - 48,498,413
singlet/doubletdoublet
Overlap geneKtn1
Upstream geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787
Downstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092I05.bB6Ng01-092I05.g
ACCDH904258DH904259
length1,0991,157
definitionDH904258|Mus musculus domesticus DNA, BAC clone: B6Ng01-092I05, 5' end.DH904259|Mus musculus domesticus DNA, BAC clone: B6Ng01-092I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,333,787 - 48,334,903)(48,497,238 - 48,498,413)
sequence
gaattccaggtcactttaatatattgttatatattattatatatatattg
ttgttggtttaatgaatcaaatagttatagctaatttaattgccttaaaa
taaatgtttgtaaagactgtctttgtattgaactcacccccagcccctta
ttagacatttacataacccaggctggccttgaggtcactgtagtgaggat
agccttgaatttctggtctgcctccgctacccaggtgctgttcctgtagg
aggcaagcatgggctctgcgtgctggggatagaaagcagggccttctgca
cactaagcaagcactctgccaagaatttcacaggatgggctctctgagcc
aaacagtagctgatcaataattacattttaaaactgtcacctgcttttat
tttgctttaaaaatattgatatgtaggtctgaatggtattaccatttacc
taatatataagttatattattgtttattttagatgctgtttacctaaaat
atattcacattctgatttagaatttcagaaaaagagaaagaaataactga
tctctgcaatgagttagagtctttgaagaatgctgttgaacaccagagga
agaaaaacaatgtaagccactactgatgagcgctagactttgcattatag
agtgttagtgaggaaagatgggggggtcttctttatgtctatttttattt
tagatctcttgatctgtgtgagagcacttttggtttcttttgtgtctgcg
ggcattgctagagtaaatcattttattataatgcaattttaatagtagaa
agatagattttttataatggaaaatagcagaatggagcttttaaagagtt
ttctgaataaaagaaatatggttgacttcatgttaaacttgttagaaaaa
taagtcttccatatgtatttagaaacaaagacatttctttttctttaatt
attatttattattatatatgtagtatgctgtagctgcttcagatccagag
agggcatcgatcttcattatggatggttgtggagccacatgtggtgtggg
attggactcagcatccttcgagagaaatcattactcttaaccgtctgag
gaattcacaggcatgcaattcatggttttcttcacatggcataaaatgtt
gtcatggtttgtatatgcttggccctgggagtggcatgattagaaggtgt
ggccttgttggaataggtgtgtcactgtgggcgtgggctttaagactctc
atcctttctgcctagaatcgagtaatttgctagcagccttcagatgaaga
tggagaactctcagcttctcctgcaccaagtctgcctggatgctaccata
ctcatgccttgatgatagtggactgaacctctgaacctgtaagccagccc
caattaaatattgtcctttataagacttgtattggtcatggtgtctgttc
acagcagtaagacaaatgtacatggcctatttagtgttaagttctcattc
ccaagatatgagttgtgtgtagggctggccactagcctgacatgaacact
acttcccatgagccagccctgaatcaggggaagcaaaagttggtgtgtgc
caagaagggacaagggcagggtggggctgcactgaggaagtggggctgcc
caccccaaccctgaagtgcttgtgaaaaagtggagaagccaaggtcatgc
aaagcaaatctttgccctagcaaccttgttcataagagccaaactgagca
caagtaaggcatttggcaggggatacacttactacttattgtaacatgaa
atattactcagcaataaaaagccaaacaattatactggtctgccctgtag
gttattactattatggagaaaagtcaaagtatgagtcagacactgatgta
attggaaagtgaacatttctatagagatggatgttacaatgtgcacgggg
aaagaatgactttcactagaagtcgcacgggattgaagtcctagacttga
accagatatcagtaactctcggctttgtatgaactgcttgatacatccgg
gcaaagctttcagatgtgtcagcagtgtgtagggtcctttcgagccattg
aacatttgaagagaatcatgtaataaacctcatcccttccacctgaacaa
acctagcttccttctttttagcattggaaacattcttttaattggacaga
ccacacttagatgactatgcaatgcaactctggaggacggaacatctctc
tattacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48333787_48334903
seq2: B6Ng01-092I05.b_45_1143

seq1  GAATTCCAGGTCACTTTAATATATTGTTATATATTATTATATATATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCACTTTAATATATTGTTATATATTATTATATATATATTG  50

seq1  TTGTTGGTTTAATGAATCAAATAGTTATAGCTAATTTAATTGCCTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTTTAATGAATCAAATAGTTATAGCTAATTTAATTGCCTTAAAA  100

seq1  TAAATGTTTGTAAAGACTGTCTTTGTATTGAACTCACCCCCAGCCCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTTGTAAAGACTGTCTTTGTATTGAACTCACCCCCAGCCCCTTA  150

seq1  TTAGACATTTACATAACCCAGGCTGGCCTTGAGGTCACTGTAGTGAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATTTACATAACCCAGGCTGGCCTTGAGGTCACTGTAGTGAGGAT  200

seq1  AGCCTTGAATTTCTGGTCTGCCTCCGCTACCCAGGTGCTGTTCCTGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGAATTTCTGGTCTGCCTCCGCTACCCAGGTGCTGTTCCTGTAGG  250

seq1  AGGCAAGCATGGGCTCTGCGTGCTGGGGATAGAAAGCAGGGCCTTCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCATGGGCTCTGCGTGCTGGGGATAGAAAGCAGGGCCTTCTGCA  300

seq1  CACTAAGCAAGCACTCTGCCAAGAATTTCACAGGATGGGCTCTCTGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGCAAGCACTCTGCCAAGAATTTCACAGGATGGGCTCTCTGAGCC  350

seq1  AAACAGTAGCTGATCAATAATTACATTTTAAAACTGTCACCTGCTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAGCTGATCAATAATTACATTTTAAAACTGTCACCTGCTTTTAT  400

seq1  TTTGCTTTAAAAATATTGATATGTAGGTCTGAATGGTATTACCATTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTAAAAATATTGATATGTAGGTCTGAATGGTATTACCATTTACC  450

seq1  TAATATATAAGTTATATTATTGTTTATTTTAGATGCTGTTTACCTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATAAGTTATATTATTGTTTATTTTAGATGCTGTTTACCTAAAAT  500

seq1  ATATTCACATTCTGATTTAGAATTTCAGAAAAAGAGAAAGAAATAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACATTCTGATTTAGAATTTCAGAAAAAGAGAAAGAAATAACTGA  550

seq1  TCTCTGCAATGAGTTAGAGTCTTTGAAGAATGCTGTTGAACACCAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAATGAGTTAGAGTCTTTGAAGAATGCTGTTGAACACCAGAGGA  600

seq1  AGAAAAACAATGTAAGCCACTACTGATGAGCGCTAGACTTTGCATTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACAATGTAAGCCACTACTGATGAGCGCTAGACTTTGCATTATAG  650

seq1  AGTGTTAGTGAGGAAAGATGGGGGGGTCTTCTTTATGTCTATTTTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGTGAGGAAAGATGGGGGGGTCTTCTTTATGTCTATTTTTATTT  700

seq1  TAGATCTCTTGATCTGTGTGAGAGCACTTTTGGTTTC-TTTGTGTCTGCG  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGATCTCTTGATCTGTGTGAGAGCACTTTTGGTTTCTTTTGTGTCTGCG  750

seq1  GGCATTGCTAGAGTAAATCATTTTATTATAATGCAATTTTAATAGTAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGCTAGAGTAAATCATTTTATTATAATGCAATTTTAATAGTAGAA  800

seq1  AGATAGATTTTTTATAATGGAAAATAGCAGAATGGAGCTTTTAAAGAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATTTTTTATAATGGAAAATAGCAGAATGGAGCTTTTAAAGAGTT  850

seq1  TTCTGAAATAAAAGAAATATGGTTGACTTCATGTTAAAACTTGTTTAGAA  899
      ||||| ||||||||||||||||||||||||||||| ||||||| ||||||
seq2  TTCTG-AATAAAAGAAATATGGTTGACTTCATGTT-AAACTTG-TTAGAA  897

seq1  AAATAAGTCTTCCAATATTGTTATTTTAGAAACAAAGACATTTCTTTTTT  949
      ||||||||||||| ||| |||   |||||||||||||||||||| |||||
seq2  AAATAAGTCTTCC-ATA-TGT--ATTTAGAAACAAAGACATTTC-TTTTT  942

seq1  CTTTTAAATTATTATTTATTTATTTATTATATGTAAGTATGCTGTAGCTG  999
      ||||  |||||||||||| |||||   ||||||| |||||||||||||||
seq2  CTTT--AATTATTATTTA-TTATT--ATATATGT-AGTATGCTGTAGCTG  986

seq1  TCTTCAGATCCCAGAAGAGGGCATCAGATC-TCATTATGGATGGTTGT-G  1047
       |||||||| |||| |||||||||| |||| ||||||||||||||||| |
seq2  -CTTCAGAT-CCAG-AGAGGGCATC-GATCTTCATTATGGATGGTTGTGG  1032

seq1  AGCCACCATGTGGTTGTGGGATTTGAACTCAGCAT-CTTCGGAAGAGCAA  1096
      ||||| ||||||| ||||||| ||| ||||||||| |||||  |||| ||
seq2  AGCCA-CATGTGG-TGTGGGA-TTGGACTCAGCATCCTTCG--AGAGAAA  1077

seq1  TCAGTACTCTTAACCG-CTGAG  1117
      ||| |||||||||||| |||||
seq2  TCATTACTCTTAACCGTCTGAG  1099

seq1: chr14_48497238_48498413
seq2: B6Ng01-092I05.g_68_1224 (reverse)

seq1  GGTAATTAGA-AGATGTTCCGTTCATCACGAGGTATGCATTTGCATATGA  49
      ||||| |||| |||||||||| || ||  |||   |||| |||||||   
seq2  GGTAA-TAGAGAGATGTTCCG-TCCTCCAGAG--TTGCA-TTGCATA--G  43

seq1  TCATCTGAGTGTGTTCTGTCCAATGTAAAAGAATGTTCTCAATGCTAACA  99
      |||||| |||||| |||||||||| ||||||||||||  ||||||||| |
seq2  TCATCTAAGTGTGGTCTGTCCAAT-TAAAAGAATGTTTCCAATGCTAAAA  92

seq1  GAGAGGAAGCTAGTGTTTGTCTAGTGTGAAGTGGATGGGGTTTTATTACA  149
         |||||||||| ||||||  || ||| |  ||||| || |||||||||
seq2  AGAAGGAAGCTAG-GTTTGTTCAG-GTGGAAGGGATGAGG-TTTATTACA  139

seq1  TGTATTCTCTTCAACTGTTTCAATGGCTCGGAAAGGACCCTTACCACACT  199
      || ||||||||||| || ||||||||||| |||||||||||   ||||||
seq2  TG-ATTCTCTTCAAATG-TTCAATGGCTC-GAAAGGACCCT--ACACACT  184

seq1  GCTGACACATCTTGAAGCTTTTGCCCGGATGTATCAAGCAGTTCATACAA  249
      ||||||||||||  |||| |||||||||||||||||||||||||||||||
seq2  GCTGACACATCTGAAAGC-TTTGCCCGGATGTATCAAGCAGTTCATACAA  233

seq1  AGCCGAGAGTTACTGATATCTGGTTCAAAGTCTAGGACTTCAAATCCCGT  299
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  AGCCGAGAGTTACTGATATCTGGTTC-AAGTCTAGGACTTC-AATCCCGT  281

seq1  GCGACTTCTAGTGAAAGTCATTCTTTCCCCGTGCACATTGTTAACATCCA  349
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCGACTTCTAGTGAAAGTCATTCTTTCCCCGTGCACATTG-TAACATCCA  330

seq1  TCTCTATAGAAATGTTCACTTTCCAATTACATCAGTGTCTGACTCATACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATAGAAATGTTCACTTTCCAATTACATCAGTGTCTGACTCATACT  380

seq1  TTGACTTTTCTCCATAATAGTAATAACCTACAGGGCAGACCAGTATAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTTCTCCATAATAGTAATAACCTACAGGGCAGACCAGTATAATT  430

seq1  GTTTGGCTTTTTATTGCTGAGTAATATTTCATGTTACAATAAGTAGTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTTTTTATTGCTGAGTAATATTTCATGTTACAATAAGTAGTAAG  480

seq1  TGTATCCCCTGCCAAATGCCTTACTTGTGCTCAGTTTGGCTCTTATGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCCTGCCAAATGCCTTACTTGTGCTCAGTTTGGCTCTTATGAAC  530

seq1  AAGGTTGCTAGGGCAAAGATTTGCTTTGCATGACCTTGGCTTCTCCACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGCTAGGGCAAAGATTTGCTTTGCATGACCTTGGCTTCTCCACTT  580

seq1  TTTCACAAGCACTTCAGGGTTGGGGTGGGCAGCCCCACTTCCTCAGTGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAGCACTTCAGGGTTGGGGTGGGCAGCCCCACTTCCTCAGTGCA  630

seq1  GCCCCACCCTGCCCTTGTCCCTTCTTGGCACACACCAACTTTTGCTTCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCCTGCCCTTGTCCCTTCTTGGCACACACCAACTTTTGCTTCCC  680

seq1  CTGATTCAGGGCTGGCTCATGGGAAGTAGTGTTCATGTCAGGCTAGTGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCAGGGCTGGCTCATGGGAAGTAGTGTTCATGTCAGGCTAGTGGC  730

seq1  CAGCCCTACACACAACTCATATCTTGGGAATGAGAACTTAACACTAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTACACACAACTCATATCTTGGGAATGAGAACTTAACACTAAATA  780

seq1  GGCCATGTACATTTGTCTTACTGCTGTGAACAGACACCATGACCAATACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGTACATTTGTCTTACTGCTGTGAACAGACACCATGACCAATACA  830

seq1  AGTCTTATAAAGGACAATATTTAATTGGGGCTGGCTTACAGGTTCAGAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATAAAGGACAATATTTAATTGGGGCTGGCTTACAGGTTCAGAGG  880

seq1  TTCAGTCCACTATCATCAAGGCATGAGTATGGTAGCATCCAGGCAGACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCACTATCATCAAGGCATGAGTATGGTAGCATCCAGGCAGACTT  930

seq1  GGTGCAGGAGAAGCTGAGAGTTCTCCATCTTCATCTGAAGGCTGCTAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGAGAAGCTGAGAGTTCTCCATCTTCATCTGAAGGCTGCTAGCA  980

seq1  AATTACTCGATTCTAGGCAGAAAGGATGAGAGTCTTAAAGCCCACGCCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCGATTCTAGGCAGAAAGGATGAGAGTCTTAAAGCCCACGCCCA  1030

seq1  CAGTGACACACCTATTCCAACAAGGCCACACCTTCTAATCATGCCACTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACACACCTATTCCAACAAGGCCACACCTTCTAATCATGCCACTCC  1080

seq1  CAGGGCCAAGCATATACAAACCATGACAACATTTTATGCCATGTGAAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAAGCATATACAAACCATGACAACATTTTATGCCATGTGAAGAA  1130

seq1  AACCATGAATTGCATGCCTGTGAATTC  1176
      |||||||||||||||||||||||||||
seq2  AACCATGAATTGCATGCCTGTGAATTC  1157