BAC Information

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BAC

Clone NameB6Ng01-093L09
Chromosome14 (Build37)
Map Location 100,251,886 - 100,385,630
singlet/doubletdoublet
Overlap geneKlf12
Upstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093L09.bB6Ng01-093L09.g
ACCDH905123DH905124
length1,2291,078
definitionDH905123|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L09, 5' end.DH905124|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,251,886 - 100,253,136)(100,384,543 - 100,385,630)
sequence
gaattccatgacctctgacaaatgttaaacttgtgggcatcagcttccac
acatatggagttacatgctagtcataggatttctatgattaagactttat
ttcattctaattatgtacatatgtgtgtgtgggtatatgcaggtaagttt
agttattcgagagggctagaagagtgtttgttcctctggggctggacttc
ccgttggttgtgaaccactggatgaaggttggctgagagctgagctcagc
tcctctgccagatcaatctgagctcttagctgcagcatcatctttccagc
cccagtagcacgaagttgaagcagataaacccaacagcagtgtgaaacag
aactgctgttctgagtagatcatgggtggtacccgaatgtggtctcctgc
tattgagagcagctgcggctccagacttttagtaaggttcttctaaaaga
cgaaaatggcacttgtaggtcgctttgaggccaaggctagaggaaattcc
ctttagctaagtggtttctttcaatacagggaagagacactggcagcact
ggatttcggatgccaaggaaatctatgttttgtgtacctgaaacaaaaat
cattattgttcatggactttccccaccatcttcatctgcccgagctgaaa
taaactggtattacagctaacagatcaggaagaaaaatgtgcttcctcaa
aggacaggtgtttcaaaaagccacaaaagataccaggtggcttattcagc
tctaagaagcccacgttgtcacacagatagcctggcaaggtaatgtcgat
gtttttgaaggttttgtttgtgtatcagtcagctccattggtttctcacc
aatatcccaggaacagttcatattctcctagagcgaaggacagaatttca
tggaaaataatgcacattacattgtttaactcctgcctgtacatttccat
tcttttctatttttttaattaactttggtagcattttgtagcctaagaac
agacttgaggagtcaaaacaaaataagacctacaaactcaaaatctccac
taagatttgtacgttaacaactggcctggtgagaaatgataagcctttcc
atctgctataaaacttgtgggacttttgggtctgagagatagttcttatg
gaatagaaccacaggcgttcgaagcaaacccataatcaggaagggtttta
ctggtcttatccgactagtgcctttgcga
gaattcttaagatggactatttttattatattttattttattttttattt
gtgtatgggtactttgcctgtatgaatgtatatgcccatgtatatccata
caccacatgcattcatggaacctgcagaggatgaaattaatatttgattc
tctggaattagagtgataggtggttgtaagccactatgtaattgtttgga
attggaccctggtcctctgtatggccagcaagcactcttacccattgagc
tacctttccagcccaagagctaaattgtacttgatagtcttcccacatcc
cagttcttgcaacctcccatcctactctgtatttctgtgttcaatttgat
taactccacaaattagtgggtggtctttgatatgctttgcagatgcagtt
tcatgctacaaaattttgtataaaagtataagtccttgaaacttttctaa
aaaaaaaaaagtgtatgcacattaaggggagctagatttatcattcatgt
tggtgttttcattaaaaggctgatagcactctttgggcttctatcacctg
gaaagctgcagaatgcatggatccatcaatgtttaattcaccgcccttca
gctgtgagtctgcatgcaagcatttagaagtacagagatagttctgaaag
aaacaactagaatacccgaaaaagggcctgctaagtacagagatatttcc
aaacttctagtaatatattgaaattttaatgtaacacaaatataaaatcc
atgttaaattatagaaaattctgtacatcgggtttacccagcattaactt
tgaaagttcagttgtaaattcgtcctccttgctttttagtttgtctctaa
ttcttaatatgcatagattgtcactattactgctctttcatctcattctt
cttgcttctccatcttgatgcccagtgttaattcacctattaaaacatca
gcttagagggtaaaaaatgagagatttcataggattcctgaggtgtggtc
atttctttgttgtaaacttttcctgagactatggggtagagaaggagcag
ggggaagattgctaaatctgagtttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_100251886_100253136
seq2: B6Ng01-093L09.b_50_1278

seq1  GAATTCCATGACCTCTGACAAATGTTAAACTTGTGGGCATCAGCTTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACCTCTGACAAATGTTAAACTTGTGGGCATCAGCTTCCAC  50

seq1  ACATATGGAGTTACATGCTAGTCATAGGATTTCTATGATTAAGACTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGAGTTACATGCTAGTCATAGGATTTCTATGATTAAGACTTTAT  100

seq1  TTCATTCTAATTATGTACATATGTGTGTGTGGGTATATGCAGGTAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTAATTATGTACATATGTGTGTGTGGGTATATGCAGGTAAGTTT  150

seq1  AGTTATTCGAGAGGGCTAGAAGAGTGTTTGTTCCTCTGGGGCTGGACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCGAGAGGGCTAGAAGAGTGTTTGTTCCTCTGGGGCTGGACTTC  200

seq1  CCGTTGGTTGTGAACCACTGGATGAAGGTTGGCTGAGAGCTGAGCTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGGTTGTGAACCACTGGATGAAGGTTGGCTGAGAGCTGAGCTCAGC  250

seq1  TCCTCTGCCAGATCAATCTGAGCTCTTAGCTGCAGCATCATCTTTCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCCAGATCAATCTGAGCTCTTAGCTGCAGCATCATCTTTCCAGC  300

seq1  CCCAGTAGCACGAAGTTGAAGCAGATAAACCCAACAGCAGTGTGAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAGCACGAAGTTGAAGCAGATAAACCCAACAGCAGTGTGAAACAG  350

seq1  AACTGCTGTTCTGAGTAGATCATGGGTGGTACCCGAATGTGGTCTCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGTTCTGAGTAGATCATGGGTGGTACCCGAATGTGGTCTCCTGC  400

seq1  TATTGAGAGCAGCTGCGGCTCCAGACTTTTAGTAAGGTTCTTCTAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGAGCAGCTGCGGCTCCAGACTTTTAGTAAGGTTCTTCTAAAAGA  450

seq1  CGAAAATGGCACTTGTAGGTCGCTTTGAGGCCAAGGCTAGAGGAAATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAATGGCACTTGTAGGTCGCTTTGAGGCCAAGGCTAGAGGAAATTCC  500

seq1  CTTTAGCTAAGTGGTTTCTTTCAATACAGGGAAGAGACACTGGCAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTAAGTGGTTTCTTTCAATACAGGGAAGAGACACTGGCAGCACT  550

seq1  GGATTTCGGATGCCAAGGAAATCTATGTTTTGTGTACCTGAAACAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCGGATGCCAAGGAAATCTATGTTTTGTGTACCTGAAACAAAAAT  600

seq1  CATTATTGTTCATGGACTTTCCCCACCATCTTCATCTGCCCGAGCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGTTCATGGACTTTCCCCACCATCTTCATCTGCCCGAGCTGAAA  650

seq1  TAAACTGGTATTACAGCTAACAGATCAGGAAGAAAAATGTGCTTCCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGGTATTACAGCTAACAGATCAGGAAGAAAAATGTGCTTCCTCAA  700

seq1  AGGACAGGTGTTTCAAAAAGCCACAAAAGATACCAGGTGGCTTATTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGTGTTTCAAAAAGCCACAAAAGATACCAGGTGGCTTATTCAGC  750

seq1  TCTAAGAAGCCCACGTTGTCACACAGATAGCCTGGCAAGGTAATGTCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAAGCCCACGTTGTCACACAGATAGCCTGGCAAGGTAATGTCGAT  800

seq1  GTTTTTGAAAGGTTTTGTTTGTGTATCAGTCAGCTCCATTGGTTTCTCAC  850
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTG-AAGGTTTTGTTTGTGTATCAGTCAGCTCCATTGGTTTCTCAC  849

seq1  CAATATCCCAGGAACAGTTCATATTCTCCTAGAGCGAAGGACAGAATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCCCAGGAACAGTTCATATTCTCCTAGAGCGAAGGACAGAATTTC  899

seq1  ATGGAAAAATAATGCACATTACATTGTTTAACTCCTGCCTGTACATTTCC  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGG-AAAATAATGCACATTACATTGTTTAACTCCTGCCTGTACATTTCC  948

seq1  ATTCTTTTCTATTTTTTTTAATTAACTTTGGTAGCATTTTGTAGCCTAAG  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCTA-TTTTTTTAATTAACTTTGGTAGCATTTTGTAGCCTAAG  997

seq1  AACAGACTTGAGGAGTCAAAACAAAATAAGACCTACAAACTCCAAAATCT  1050
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACAGACTTGAGGAGTCAAAACAAAATAAGACCTACAAACT-CAAAATCT  1046

seq1  CCACTAAGATGTGTTACGTTAACAACTGGCCTTGTTGAGAAATGATAAGC  1100
      |||||||||| || ||||||||||||||||| || |||||||||||||||
seq2  CCACTAAGATTTG-TACGTTAACAACTGGCC-TGGTGAGAAATGATAAGC  1094

seq1  CTTTTCCATCTGGCTATTAGACTTGT-GGACTCTTGGGTCTGAGAGTAAG  1149
      | ||||||||| ||||| | |||||| ||||| |||||||||||||  ||
seq2  C-TTTCCATCT-GCTATAAAACTTGTGGGACTTTTGGGTCTGAGAGATAG  1142

seq1  TTTCCTTATTGAATAGAA-CACAGGCGTTCCAGAAGCAAACCCATAAATC  1198
      ||  ||||| |||||||| |||||||||||  ||||||||||||| ||||
seq2  TT--CTTATGGAATAGAACCACAGGCGTTC--GAAGCAAACCCAT-AATC  1187

seq1  AGGTGAAGGTTGTTTCTCCTGCTCTCTTATCTCTGCATCATGTGCCTTTG  1248
      ||  |||||  |||| | |||   |||||||    |  |  |||||||||
seq2  AG--GAAGG--GTTT-TACTG--GTCTTATC----CGACTAGTGCCTTTG  1226

seq1  CGA  1251
      |||
seq2  CGA  1229

seq1: chr14_100384543_100385630
seq2: B6Ng01-093L09.g_70_1147 (reverse)

seq1  AGCAAACTCTGATTTTTGCCATCTTTTCCCCTGGCTCCTTCTCTACCCCA  50
      ||||||||| || ||| || |||  ||||||  |||||||||||||||||
seq2  AGCAAACTCAGA-TTTAGCAATC--TTCCCCCTGCTCCTTCTCTACCCCA  47

seq1  TAGTCTCAAGAAAAAGTTTACAAACAAAGGAAATGGACACACCCTCAGGA  100
      ||||||| || |||||||||| |||||| ||||||  |||| ||||||||
seq2  TAGTCTC-AGGAAAAGTTTAC-AACAAA-GAAATGACCACA-CCTCAGGA  93

seq1  ATCCTTTGAAATCTTCTCATTTTTTTACCCTCTAAGCTGATGTTTTTAAT  150
      ||||| ||||||| ||||| |||||||||||||||||||||| |||||||
seq2  ATCCTATGAAATC-TCTCA-TTTTTTACCCTCTAAGCTGATG-TTTTAAT  140

seq1  AGGTTGAATTAACACTGGGCATCAAGATGGAGAAGCAAGAAGAATGAGAT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGG-TGAATTAACACTGGGCATCAAGATGGAGAAGCAAGAAGAATGAGAT  189

seq1  GAAAGAGCAGTTAATAGTGACAAATCTATGCATATTAAGAATTAGAGACA  250
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  GAAAGAGCAG-TAATAGTGAC-AATCTATGCATATTAAGAATTAGAGACA  237

seq1  AACT-AAAAGCAAGGA-GACGAATTTACAACTGAACTTTCAAAGTTAATG  298
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACTAAAAAGCAAGGAGGACGAATTTACAACTGAACTTTCAAAGTTAATG  287

seq1  CTGGGTAAA-CCGATGTACAGAATTTTCTATAATTTAACATGGATTTTAT  347
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAAACCCGATGTACAGAATTTTCTATAATTTAACATGGATTTTAT  337

seq1  ATTTGTGTTACATTAAAATTTCAATATATTACTAGAAGTTTGGAAATATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTACATTAAAATTTCAATATATTACTAGAAGTTTGGAAATATC  387

seq1  TCTGTACTTAGCAGGCCCTTTTTCGGGTATTCTAGTTGTTTCTTTCAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTTAGCAGGCCCTTTTTCGGGTATTCTAGTTGTTTCTTTCAGAA  437

seq1  CTATCTCTGTACTTCTAAATGCTTGCATGCAGACTCACAGCTGAAGGGCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTGTACTTCTAAATGCTTGCATGCAGACTCACAGCTGAAGGGCG  487

seq1  GTGAATTAAACATTGATGGATCCATGCATTCTGCAGCTTTCCAGGTGATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTAAACATTGATGGATCCATGCATTCTGCAGCTTTCCAGGTGATA  537

seq1  GAAGCCCAAAGAGTGCTATCAGCCTTTTAATGAAAACACCAACATGAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCAAAGAGTGCTATCAGCCTTTTAATGAAAACACCAACATGAATG  587

seq1  ATAAATCTAGCTCCCCTTAATGTGCATACACTTTTTTTTTTTTAGAAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTAGCTCCCCTTAATGTGCATACACTTTTTTTTTTTTAGAAAAG  637

seq1  TTTCAAGGACTTATACTTTTATACAAAATTTTGTAGCATGAAACTGCATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGACTTATACTTTTATACAAAATTTTGTAGCATGAAACTGCATC  687

seq1  TGCAAAGCATATCAAAGACCACCCACTAATTTGTGGAGTTAATCAAATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCATATCAAAGACCACCCACTAATTTGTGGAGTTAATCAAATTG  737

seq1  AACACAGAAATACAGAGTAGGATGGGAGGTTGCAAGAACTGGGATGTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAAATACAGAGTAGGATGGGAGGTTGCAAGAACTGGGATGTGGG  787

seq1  AAGACTATCAAGTACAATTTAGCTCTTGGGCTGGAAAGGTAGCTCAATGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATCAAGTACAATTTAGCTCTTGGGCTGGAAAGGTAGCTCAATGG  837

seq1  GTAAGAGTGCTTGCTGGCCATACAGAGGACCAGGGTCCAATTCCAAACAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGTGCTTGCTGGCCATACAGAGGACCAGGGTCCAATTCCAAACAA  887

seq1  TTACATAGTGGCTTACAACCACCTATCACTCTAATTCCAGAGAATCAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGTGGCTTACAACCACCTATCACTCTAATTCCAGAGAATCAAAT  937

seq1  ATTAATTTCATCCTCTGCAGGTTCCATGAATGCATGTGGTGTATGGATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTCATCCTCTGCAGGTTCCATGAATGCATGTGGTGTATGGATAT  987

seq1  ACATGGGCATATACATTCATACAGGCAAAGTACCCATACACAAATAAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGCATATACATTCATACAGGCAAAGTACCCATACACAAATAAAAA  1037

seq1  ATAAAATAAAATATAATAAAAATAGTCCATCTTAAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAATATAATAAAAATAGTCCATCTTAAGAATTC  1078