BAC Information

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BAC

Clone NameB6Ng01-096C02
Chromosome14 (Build37)
Map Location 111,224,462 - 111,225,663
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772
Downstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096C02.bB6Ng01-096C02.g
ACCDH906878DH906879
length1,1701,200
definitionDH906878|Mus musculus domesticus DNA, BAC clone: B6Ng01-096C02, 5' end.DH906879|Mus musculus domesticus DNA, BAC clone: B6Ng01-096C02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctccgagtattttaataacttgattatagattttgcatttcaaa
tttaagcttcacattagatattccaagtaaagctttgatattttgacaag
ttaaaagcacatctatactttataacctattaatacaagtttaagaagct
gtcctagccaagattttctctttcaaggtgatgaatatcttaataaaact
tttaatctcactttagttttgcataaattcctgcatttaaaaataaagta
cacaattgtaatttgtctcctaatgtctgatttcttaaatctgaatatta
ttctaaatgataaggagtaatgtgcttgaaagagtatgttttaaaattaa
taatctaataatttagacaaaaataacaaaataattcaacatatattctc
catttaaataattgctttttgtcttctatttatcattagtttgtaacatc
taaattaattgtataaatatgtttgtgattagaatcataaaaatatatct
atatatataatttaaaaatttaatctttttttttaaaaataaaatacttc
aggaagtttagccaatcacttcatgaggtaaagcttgtaaaaaggtcttt
ttcttcattacttttaaagaatacattaaagataaagaaaatacattatt
acagatttcactgtattgaaatagtcacgctatatttttaatgtggtaaa
aatgatcattaagcccaagttttataccctgtgttatcccctactttcag
aaatgaagaaggaacagattatttctgtgataatggcaatattcgaaagc
aatttttataatttacttgtatttgtttattctatatgatatccatttct
ttaaaaaacaaaccaatcaaccaaccaaacaaccaaacaaaaaaaccaga
aacaagtaggacgtaatggtgaatgccagtttttattgaagccaaaaaag
ttttattggcagaaatacacttattgtaaaatctatgctgaggcaaatac
ctagtcatcaatataagtcatgtaccagtaagattttttattactctgta
ctatacttacgattattcaaacagtcacaaagcttactttaactatcgtc
tttgagcacatgatgaatatatcggttcgattcatgcataagctaattat
cattagtcaagtaaatatat
gaattcttttacatgtaactatccagtttgacaattccatttgttgaaga
tattgtcttcctttccatgtgagcttatggctctttatcaaatatcaaat
attcatagatgtgtagacttgcatatgagtctttaatcaaattacgctga
tcaaagtctgttttgtgagaatgctgcttttattgttgtagatttctatt
acaatttgagtttgtagctggtgatacttcctgcagttcttttactactc
agtactgttttatatatcttgtgctttttgtgtttccatatgaagtttaa
gattgtgctttcaagatctataaacaattgtactggaattttgattggga
tagcattaaatctttatttcttttggcaaaaaggtctggtctttttacta
tgtttcttctgctgacacatgagtatatggcatcttcccatcttctggta
tcttcattaatttctttcttctttgattcaaaggtgttttgtcttttttg
gtttttttttgtttttatcattccatcctttcatatgctgggttaagagt
tatcacaagatatgtccatctttttatagctattaggaaacatgtagctt
cttaaattctgtctaacccatttgtcatttgtatataggaagtctatatt
tttatatgtttactttatttcttgacactttgctgaaaatgataatcagc
taaaagggtttcctacggaattcctgtagaataaaattactttgaatatt
tcctttccaaataagcttcatttgccttattgctctgagacttcaaagtc
tacatgtattgagagagtggactaaaaccttgtctttttcctattgagtg
gatttactttgaatttctctcgatttaagttgataccgtccatgggcttg
atattaatgatctttattatgttgaggtacagctcttatgttgatgtaca
taaacatatttcatttatcccttagctctcacagactttatcacgaatgg
gacttgatatgccaaagcttttcatgtatatgacatgatgactatatagt
ctttcagttatatggtagttagcattatcattcatcatgtgaattttttc
atttctagagaaacatactgatcatgtaggtatattttggacgcatcacg
tggaccatgagaacagcgcacaatgtcatagtagttagagagcccctaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111224462_111225663
seq2: B6Ng01-096C02.b_46_1215 (reverse)

seq1  ATATATTTATTACTTTGAAACTAATGATAATAGGCTTTTAATGCATGAAT  50
      ||||||   ||||||    ||||||||||||  ||||   ||||||||||
seq2  ATATAT---TTACTT---GACTAATGATAATTAGCTT---ATGCATGAAT  41

seq1  CTGAAACGATATTATTCATACCATGTGCCTTCAAAGACGATAGTTTAAAA  100
      | ||| ||||| |||||||  |||||||  |||||||||||||||  |||
seq2  C-GAACCGATA-TATTCAT--CATGTGC--TCAAAGACGATAGTT--AAA  83

seq1  GTTAAGCCTTTGTGACCTGTTTTGAATAATTCGTTAAGTATAGTACAGGA  150
      | |||| |||||||| ||| ||||||||| ||| ||||||||||||| ||
seq2  G-TAAG-CTTTGTGA-CTG-TTTGAATAA-TCG-TAAGTATAGTACA-GA  126

seq1  GTTAATAAACATCTTTACTTGGTTACATGACTTTATATTGGATGACCTAG  200
      | ||||||| |   |||||  | |||||||| ||||||| ||||| ||||
seq2  G-TAATAAAAAATCTTACT--GGTACATGAC-TTATATT-GATGA-CTAG  170

seq1  GTATTTGCCTCAGCATAGATTTTTACAATAAGTGTATTTCTTGCCAATAA  250
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  GTATTTGCCTCAGCATAGA-TTTTACAATAAGTGTATTTC-TGCCAATAA  218

seq1  TACTTTTTTTGGCTTCAAT-AAAACTGGCATTCACCATTACGTCCTACTT  299
       || ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAC-TTTTTTGGCTTCAATAAAAACTGGCATTCACCATTACGTCCTACTT  267

seq1  GTTTCTGGTTTTTTTGTTTGGTTGTTTGGTTGGTTGATTGGTTTGTTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGTTTTTTTGTTTGGTTGTTTGGTTGGTTGATTGGTTTGTTTTT  317

seq1  TAAAGAAATGGATATCATATAGAATAAACAAATACAAGTAAATTATAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATGGATATCATATAGAATAAACAAATACAAGTAAATTATAAAA  367

seq1  ATTGCTTTCGAATATTGCCATTATCACAGAAATAATCTGTTCCTTCTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTCGAATATTGCCATTATCACAGAAATAATCTGTTCCTTCTTCA  417

seq1  TTTCTGAAAGTAGGGGATAACACAGGGTATAAAACTTGGGCTTAATGATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAAGTAGGGGATAACACAGGGTATAAAACTTGGGCTTAATGATC  467

seq1  ATTTTTACCACATTAAAAATATAGCGTGACTATTTCAATACAGTGAAATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACCACATTAAAAATATAGCGTGACTATTTCAATACAGTGAAATC  517

seq1  TGTAATAATGTATTTTCTTTATCTTTAATGTATTCTTTAAAAGTAATGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAATGTATTTTCTTTATCTTTAATGTATTCTTTAAAAGTAATGAA  567

seq1  GAAAAAGACCTTTTTACAAGCTTTACCTCATGAAGTGATTGGCTAAACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGACCTTTTTACAAGCTTTACCTCATGAAGTGATTGGCTAAACTT  617

seq1  CCTGAAGTATTTTATTTTTAAAAAAAAAGATTAAATTTTTAAATTATATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTATTTTATTTTTAAAAAAAAAGATTAAATTTTTAAATTATATA  667

seq1  TATAGATATATTTTTATGATTCTAATCACAAACATATTTATACAATTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATATATTTTTATGATTCTAATCACAAACATATTTATACAATTAAT  717

seq1  TTAGATGTTACAAACTAATGATAAATAGAAGACAAAAAGCAATTATTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTTACAAACTAATGATAAATAGAAGACAAAAAGCAATTATTTAA  767

seq1  ATGGAGAATATATGTTGAATTATTTTGTTATTTTTGTCTAAATTATTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAATATATGTTGAATTATTTTGTTATTTTTGTCTAAATTATTAGA  817

seq1  TTATTAATTTTAAAACATACTCTTTCAAGCACATTACTCCTTATCATTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTTTAAAACATACTCTTTCAAGCACATTACTCCTTATCATTTA  867

seq1  GAATAATATTCAGATTTAAGAAATCAGACATTAGGAGACAAATTACAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATATTCAGATTTAAGAAATCAGACATTAGGAGACAAATTACAATT  917

seq1  GTGTACTTTATTTTTAAATGCAGGAATTTATGCAAAACTAAAGTGAGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTTATTTTTAAATGCAGGAATTTATGCAAAACTAAAGTGAGATT  967

seq1  AAAAGTTTTATTAAGATATTCATCACCTTGAAAGAGAAAATCTTGGCTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTATTAAGATATTCATCACCTTGAAAGAGAAAATCTTGGCTAG  1017

seq1  GACAGCTTCTTAAACTTGTATTAATAGGTTATAAAGTATAGATGTGCTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTCTTAAACTTGTATTAATAGGTTATAAAGTATAGATGTGCTTT  1067

seq1  TAACTTGTCAAAATATCAAAGCTTTACTTGGAATATCTAATGTGAAGCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTCAAAATATCAAAGCTTTACTTGGAATATCTAATGTGAAGCTT  1117

seq1  AAATTTGAAATGCAAAATCTATAATCAAGTTATTAAAATACTCGGAGGAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAAATGCAAAATCTATAATCAAGTTATTAAAATACTCGGAGGAA  1167

seq1  TTC  1202
      |||
seq2  TTC  1170