BAC Information

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BAC

Clone NameB6Ng01-099F12
Chromosome14 (Build37)
Map Location 72,200,407 - 72,334,610
singlet/doubletdoublet
Overlap geneLOC668477
Upstream geneGfra2, LOC100043132, LOC100043136
Downstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099F12.bB6Ng01-099F12.g
ACCDH909162DH909163
length1,243986
definitionDH909162|Mus musculus domesticus DNA, BAC clone: B6Ng01-099F12, 5' end.DH909163|Mus musculus domesticus DNA, BAC clone: B6Ng01-099F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,333,347 - 72,334,610)(72,200,407 - 72,201,376)
sequence
gaattccacaggcagaaatgatgtaaaagcaaggaaaactgtcctgcccc
cacactaattttagcgttttccttcatgaacaaggtgggaggccttgagt
ctttgaactcctgagagcttctagcttccaaaggcataaaacagagacta
taggcacttttgcttcccttcagggttattctaaagctcaaacccaatgc
tgcctagggtaacaacgctctgattacagagatgcacttctctggcatct
ctagtgtatttagattcattaggcttaaagacacaaactcaagaggagat
gccactaacagcataggagaaggattctgtcttggttgaattctgtttat
agcttgccctcaaggataggcatttgtttgttttaagccaaagatttggg
tctccgtaaagatattcatggctttcaggacatgaaaatgtgctgtggct
gtcacaagttagtttgaatctcactccagggagctcagctcagtaaacac
tttcatgtgtaagtggcacccttaatcaagccagtgaatcttaacctaac
tttcacaataaacgtataaatagagccctgattaaataattgttattttc
ttgctgagaaactcagttgggatcctgtctttagtgtaatatgttatgca
aatgctacatacagcctgtatatggctcctccgcagccagccaactgtgc
ctttgatcacaccaaaacagagctgggaatcaaaggctagggtcccatct
ttgttctcccactgagtaacagtgtgaccttgagaaagtcaattttccag
agcctctaagttctcatcctgcataaaaaagacttgaagatcaataactt
gtactcagctaatgcccctcccccaaccatagagtccatgtctttttttt
aaaaaggctactaatctgtatgtattacatgataattcattcatttcccc
agtctaagaatcaaggcatttataatggtagccatagattctgacagact
ttaatacagcgttattagagggaactgaagataatttcaaccaaagaagg
atgcgaacacttcagttcgtgtgtgctgcaattgacagacgtgatgcatt
ggtcagtcttgcatctggtgaccactctctctgtgtcaatcttggaggtt
gtgagtgtcaaggtctccttaactccggttcagtcaggaaaggctttgta
tgtctcctagctcactctactcatgaatgggatatttggggag
gaattcttttttttcccttgctatttacttactctctctccatgtctctc
tttctgtctgcttctctctctgcttctctgtttgtgtctctgtgtctctc
tctctctgtctctgtgtctgtctctgtctctctgtctctgtctctgtctc
tctgtctctctctctctctctctctctctctcacacacacacacacacac
acacacacacacagagcatcccaggttcccccttcttgctgctgtttggc
tacaggtaattctgggctgcagcaagaggacttggtgggtttggggtgct
gtgactggcaaagacagttgggagggagatggcccttggtgactttagac
ctagcccactgagccctcccttttctcattaggagcaggaagccttgagc
agggactcctttgaccatttgtcattgttattggggcactaggacatcct
gcaatggagtatacactggataagtgtggggagccgccctcacattcgcc
gttgcaagatggcgctaacatcctgtgttctaagtggtaaacaaataatc
tgcgcatgtgccaagggtagttttccaccccatgtgctctgccttccccg
tgacgacaactcggccgatgggctgcagccaatcaaggagtaatatgtcc
taggcggagaataattctccttaaaggggacggggtttcgccattctcct
tcttgcgctcttgctctggctcttgcactctagcgctcttgcgctctggc
tcctaaagatgtaagcaatagagctcttgctcttgcactcttgctcctga
agatgtagcaataaagttttgccgcagaagattccggtttgttgcgtctt
tcctggccggtcgcgagaacgcgggtaagagtttggtgctgaaacccggg
acgagaaacctgggacggttatcatcacggcgcaaggaagatccctcatt
ccggaacaaactgcggggtcatggaataaggttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_72333347_72334610
seq2: B6Ng01-099F12.b_47_1289 (reverse)

seq1  CTCCCCAAAT-TCCCA-TCATGAATGGATGTGAGCTTAGGAGCTATACAA  48
      |||||||||| ||||| |||||| | || |||||| ||||||  ||||||
seq2  CTCCCCAAATATCCCATTCATGAGTAGA-GTGAGC-TAGGAGACATACAA  48

seq1  GAGCTTTCACTGACTGAACGGGAGTTTAGGGGAACACTTTGGACACCTCA  98
       ||| ||  |||||||||| |||||| ||| || |    | |||| ||||
seq2  -AGCCTTTCCTGACTGAACCGGAGTTAAGGAGACC----TTGACA-CTCA  92

seq1  CAACCTCAAGGATTTGACACAGGAGAGGAGTGGTCA-CAGATGCAAGACT  147
      ||||||| | || |||||||| |||| ||||||||| |||||||||||||
seq2  CAACCTCCAAGA-TTGACACA-GAGA-GAGTGGTCACCAGATGCAAGACT  139

seq1  GACCAATGCATTCCTTCTGTCTGTTCAATGTGCAGCCACACAACGAACTG  197
      |||||||||||  | ||||     ||||| ||||| ||||| ||||||||
seq2  GACCAATGCATCACGTCTG-----TCAAT-TGCAG-CACAC-ACGAACTG  181

seq1  AAGTGTTCCGCATCCTTTCTTTTGGTTGAAATTATC-TCAGTTCCCTCTG  246
      ||||||| |||||||||   |||||||||||||||| |||||||||||| 
seq2  AAGTGTT-CGCATCCTT--CTTTGGTTGAAATTATCTTCAGTTCCCTCTA  228

seq1  ATAACGCTGTA-TAAAGTCTGGTCAGAATCTATGGCTACCATTTATAAAT  295
      ||||||||||| |||||||| |||||||||||||||||||| ||||||||
seq2  ATAACGCTGTATTAAAGTCT-GTCAGAATCTATGGCTACCA-TTATAAAT  276

seq1  GCCTTTGATTCTTAGACTTGGGGAAATGAATGAATTATCATGTAATACAT  345
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCC-TTGATTCTTAGAC-TGGGGAAATGAATGAATTATCATGTAATACAT  324

seq1  ACAGATTAGTAGCCTTTTTAAAAAAAAGACATGGACTCTATGGTTGGGGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTAGTAGCCTTTTTAAAAAAAAGACATGGACTCTATGGTTGGGGG  374

seq1  AGGGGCATTAGCTGAGTACAAGTTATTGATCTTCAAGTCTTTTTTATGCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATTAGCTGAGTACAAGTTATTGATCTTCAAGTCTTTTTTATGCA  424

seq1  GGATGAGAACTTAGAGGCTCTGGAAAATTGACTTTCTCAAGGTCACACTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGAACTTAGAGGCTCTGGAAAATTGACTTTCTCAAGGTCACACTG  474

seq1  TTACTCAGTGGGAGAACAAAGATGGGACCCTAGCCTTTGATTCCCAGCTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGTGGGAGAACAAAGATGGGACCCTAGCCTTTGATTCCCAGCTC  524

seq1  TGTTTTGGTGTGATCAAAGGCACAGTTGGCTGGCTGCGGAGGAGCCATAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGTGTGATCAAAGGCACAGTTGGCTGGCTGCGGAGGAGCCATAT  574

seq1  ACAGGCTGTATGTAGCATTTGCATAACATATTACACTAAAGACAGGATCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGTATGTAGCATTTGCATAACATATTACACTAAAGACAGGATCC  624

seq1  CAACTGAGTTTCTCAGCAAGAAAATAACAATTATTTAATCAGGGCTCTAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGTTTCTCAGCAAGAAAATAACAATTATTTAATCAGGGCTCTAT  674

seq1  TTATACGTTTATTGTGAAAGTTAGGTTAAGATTCACTGGCTTGATTAAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACGTTTATTGTGAAAGTTAGGTTAAGATTCACTGGCTTGATTAAGG  724

seq1  GTGCCACTTACACATGAAAGTGTTTACTGAGCTGAGCTCCCTGGAGTGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTTACACATGAAAGTGTTTACTGAGCTGAGCTCCCTGGAGTGAG  774

seq1  ATTCAAACTAACTTGTGACAGCCACAGCACATTTTCATGTCCTGAAAGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACTAACTTGTGACAGCCACAGCACATTTTCATGTCCTGAAAGCC  824

seq1  ATGAATATCTTTACGGAGACCCAAATCTTTGGCTTAAAACAAACAAATGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATCTTTACGGAGACCCAAATCTTTGGCTTAAAACAAACAAATGC  874

seq1  CTATCCTTGAGGGCAAGCTATAAACAGAATTCAACCAAGACAGAATCCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTGAGGGCAAGCTATAAACAGAATTCAACCAAGACAGAATCCTT  924

seq1  CTCCTATGCTGTTAGTGGCATCTCCTCTTGAGTTTGTGTCTTTAAGCCTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATGCTGTTAGTGGCATCTCCTCTTGAGTTTGTGTCTTTAAGCCTA  974

seq1  ATGAATCTAAATACACTAGAGATGCCAGAGAAGTGCATCTCTGTAATCAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTAAATACACTAGAGATGCCAGAGAAGTGCATCTCTGTAATCAG  1024

seq1  AGCGTTGTTACCCTAGGCAGCATTGGGTTTGAGCTTTAGAATAACCCTGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTGTTACCCTAGGCAGCATTGGGTTTGAGCTTTAGAATAACCCTGA  1074

seq1  AGGGAAGCAAAAGTGCCTATAGTCTCTGTTTTATGCCTTTGGAAGCTAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCAAAAGTGCCTATAGTCTCTGTTTTATGCCTTTGGAAGCTAGA  1124

seq1  AGCTCTCAGGAGTTCAAAGACTCAAGGCCTCCCACCTTGTTCATGAAGGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCAGGAGTTCAAAGACTCAAGGCCTCCCACCTTGTTCATGAAGGA  1174

seq1  AAACGCTAAAATTAGTGTGGGGGCAGGACAGTTTTCCTTGCTTTTACATC  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTAAAATTAGTGTGGGGGCAGGACAGTTTTCCTTGCTTTTACATC  1224

seq1  ATTTCTGCCTGTGGAATTC  1264
      |||||||||||||||||||
seq2  ATTTCTGCCTGTGGAATTC  1243

seq1: chr14_72200407_72201376
seq2: B6Ng01-099F12.g_69_1034

seq1  GAATTCTTTTTTTTCCCTTGCTATTTACTTACTCTCTCTCCATGTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTCCCTTGCTATTTACTTACTCTCTCTCCATGTCTCTC  50

seq1  TTTCTGTCTGCTTCTCTCTCTGCTTCTCTGTTTGTGTCTCTGTGTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTGCTTCTCTCTCTGCTTCTCTGTTTGTGTCTCTGTGTCTCTC  100

seq1  TCTCTCTGTCTCTGTGTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCTCTGTGTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTC  150

seq1  TCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACAC  200

seq1  ACACACACACACAGAGCATCCCAGGTTCCCCCTTCTTGCTGCTGTTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAGAGCATCCCAGGTTCCCCCTTCTTGCTGCTGTTTGGC  250

seq1  TACAGGTAATTCTGGGCTGCAGCAAGAGGACTTGGTGGGTTTGGGGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTAATTCTGGGCTGCAGCAAGAGGACTTGGTGGGTTTGGGGTGCT  300

seq1  GTGACTGGCAAAGACAGTTGGGAGGGAGATGGCCCTTGGTGACTTTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGGCAAAGACAGTTGGGAGGGAGATGGCCCTTGGTGACTTTAGAC  350

seq1  CTAGCCCACTGAGCCCTCCCTTTTCTCATTAGGAGCAGGAAGCCTTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCACTGAGCCCTCCCTTTTCTCATTAGGAGCAGGAAGCCTTGAGC  400

seq1  AGGGACTCCTTTGACCATTTGTCATTGTTATTGGGGCACTAGGACATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCCTTTGACCATTTGTCATTGTTATTGGGGCACTAGGACATCCT  450

seq1  GCAATGGAGTATACACTGGATAAGTGTGGGGAGCCGCCCTCACATTCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGAGTATACACTGGATAAGTGTGGGGAGCCGCCCTCACATTCGCC  500

seq1  GTTGCAAGATGGCGCTAACATCCTGTGTTCTAAGTGGTAAACAAATAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAGATGGCGCTAACATCCTGTGTTCTAAGTGGTAAACAAATAATC  550

seq1  TGCGCATGTGCCAAGGGTAGTTTTCCACCCCATGTGCTCTGCCTTCCCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCATGTGCCAAGGGTAGTTTTCCACCCCATGTGCTCTGCCTTCCCCG  600

seq1  TGACGACAACTCGGCCGATGGGCTGCAGCCAATCAAGGAGTAATATGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGACAACTCGGCCGATGGGCTGCAGCCAATCAAGGAGTAATATGTCC  650

seq1  TAGGCGGAGAATAATTCTCCTTAAAGGGGACGGGGTTTCGCCATTCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGGAGAATAATTCTCCTTAAAGGGGACGGGGTTTCGCCATTCTCCT  700

seq1  TCTTGCGCTCTTGCTCTGGCTCTTGCACTCTAGCGCTCTTGCGCTCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCGCTCTTGCTCTGGCTCTTGCACTCTAGCGCTCTTGCGCTCTGGC  750

seq1  TCCTAAAGATGTAAGCAATAGAGCTCTTGCTCTTGCACTCTTGCTCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGATGTAAGCAATAGAGCTCTTGCTCTTGCACTCTTGCTCCTGA  800

seq1  AGATGTAAGCAATAAAGTTTTGCCGCAGAAGATTCCGGTTTGTTGCGTCT  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGT-AGCAATAAAGTTTTGCCGCAGAAGATTCCGGTTTGTTGCGTCT  849

seq1  TTCCTGGCCGGTCGCGAGAACGCGGGTAAGAG-TTGGTGCTGAAACCCGG  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCCTGGCCGGTCGCGAGAACGCGGGTAAGAGTTTGGTGCTGAAACCCGG  899

seq1  GACGAGAAAACCTGGGACGGTTACCATCACCGGCGCAAGGAAGATCCCTC  949
      |||||| |||||||||||||||| ||||| ||||||||||||||||||||
seq2  GACGAG-AAACCTGGGACGGTTATCATCA-CGGCGCAAGGAAGATCCCTC  947

seq1  ATTCCGGAACCAGAACTGCGG  970
      ||||||||||   ||||||||
seq2  ATTCCGGAAC--AAACTGCGG  966