BAC Information

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BAC

Clone NameB6Ng01-100G20
Chromosome14 (Build37)
Map Location 57,234,275 - 57,381,526
singlet/doubletdoublet
Overlap geneParp4, LOC100042788, 4930548G07Rik, Pspc1
Upstream geneRec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj
Downstream geneLOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100G20.bB6Ng01-100G20.g
ACCDH909930DH909931
length9881,166
definitionDH909930|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G20, 5' end.DH909931|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,234,275 - 57,235,266)(57,380,348 - 57,381,526)
sequence
gaattctggggacttttcagaggggatataaatgctagggccccaagagg
tttgggttgttggctgtaggttgttgattgtaggttattggttgccattg
gtctcacgtaaaaaaagaaatacgaaattagatatcctgacaatatagag
aaaacttgcaccaaggaactgcagacaacaataacatcgcccccttccta
ccctgacttcatttggaaatttctttccctctatcctgcttcctcgccta
cccaaagtccaccccatgttcatgtggtggtgggagagcccctgtcagca
gtaagtcaaggccagccttacgctgttatctcctgcttgtatcacatttg
cctgtgctattattgatcaaaggaagtcacatggtcagccccgttggtga
gtttatagacgccattcccaagcaaggggtgctccctaagtccctgcaaa
agggttaatgtcctagagcacagagccttgtagtcattttccagtgttgt
tgtcattattttaactttatctacatcttcaaaagtctttttatgtttat
gaatacagaccttaaaaacaacatctaattccaaagcatctagtcaatgt
taggtttattatttcaggttccgcttatgtcatgtgctttctgttatatc
cagataaatatgaagaagtaattgtctcaaacttaagtagattttgtagt
atacatcaactgtagagtttgaaggtaaccagtatgatagtggtcattca
tgttttggatgtagtactgcagtgttgattcgtaatggagttatataaat
aatgcaagtacttaccgctcgtcaggtcagcacacacagacaggatgctg
ttatttccttgttactccgtttgtgcttattttgtgttgcagagcacaga
ctgtaaagcttgtggttagcactgtggaaggcagctcttggacagcggtg
gattttctctccacatggtttgcgtgatgatacctccc
gaattcatagatccttctacctgggattaaaggcatgccccacaaagctt
gccaatttttattttttatttagtcatttctttgttcatttgttatttaa
attttgaaaaggtatatatgtatagtagtgccataagttatatgtcatag
gaattgtattacacatttgagattaaatagttgactggtaatgcctgtcc
tataagggcaaaactgttaaatatgtaattacaggaagagtgagctggtt
tgttatctttagcccatccacgtagcttggtacataacaaaacgttttta
ttactaagaaaatctgattctaagctattaacttagggcttactgggatt
gtatgttacaggtttcagtatgtgtagtagttgaacgaaaaccagaaagt
ctttatgagagctagtaataaaagcataggttggagtattgcattttgta
agtttgaatcattatttcattattaatttggcactatttgaaaatttcat
aaatttgtgtttatagaatctatttcatgatcctgtcatgagacaatgta
tggtgcctaactgttcaggccataaatgtccaataagtgatagttactat
tctctgtggttgtttacctcttaagtatacacttttgtatgtttttaatg
ttaatacagggaaagagaacagccaccacggtttgctcaacctgggacat
ttgaatttgaatatgcgtctcgatggaaggctcttgatgaaatggaaaag
cagcagcgggaacaagttgatagaaacatcagagaagccaaagagaaact
ggaggcagagatggaagcagctagacatgaacaccagttaatgctatgag
gaaggtaaaggagatgtgccagtgagatgtagtcctttattattagttgt
ggtgtggagaacagggtctttctatatataccagactagattgaacttgc
agatctgcttgtctcctgcctttgagtgctgtgtgctagtattacttgcc
attagagttcagaaacaggattgtactcagtatactgttctaagaaaact
tgtgtgttttaaaacgacttcttcttactctggtaatcagccattggttg
accactatatatcctggagatcttgaattcgaaataaggcacaacaactg
ggcgaacctttttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57234275_57235266
seq2: B6Ng01-100G20.b_45_1032

seq1  GAATTCTGGGGACTTTTCAGAGGGGATATAAATGCTAGGGCCCCAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGACTTTTCAGAGGGGATATAAATGCTAGGGCCCCAAGAGG  50

seq1  TTTGGGTTGTTGGCTGTAGGTTGTTGATTGTAGGTTATTGGTTGCCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTGTTGGCTGTAGGTTGTTGATTGTAGGTTATTGGTTGCCATTG  100

seq1  GTCTCACGTAAAAAAAGAAATACGAAATTAGATATCCTGACAATATAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACGTAAAAAAAGAAATACGAAATTAGATATCCTGACAATATAGAG  150

seq1  AAAACTTGCACCAAGGAACTGCAGACAACAATAACATCGCCCCCTTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGCACCAAGGAACTGCAGACAACAATAACATCGCCCCCTTCCTA  200

seq1  CCCTGACTTCATTTGGAAATTTCTTTCCCTCTATCCTGCTTCCTCGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTTCATTTGGAAATTTCTTTCCCTCTATCCTGCTTCCTCGCCTA  250

seq1  CCCAAAGTCCACCCCATGTTCATGTGGTGGTGGGAGAGCCCCTGTCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTCCACCCCATGTTCATGTGGTGGTGGGAGAGCCCCTGTCAGCA  300

seq1  GTAAGTCAAGGCCAGCCTTACGCTGTTATCTCCTGCTTGTATCACATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCAAGGCCAGCCTTACGCTGTTATCTCCTGCTTGTATCACATTTG  350

seq1  CCTGTGCTATTATTGATCAAAGGAAGTCACATGGTCAGCCCCGTTGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTATTATTGATCAAAGGAAGTCACATGGTCAGCCCCGTTGGTGA  400

seq1  GTTTATAGACGCCATTCCCAAGCAAGGGGTGCTCCCTAAGTCCCTGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAGACGCCATTCCCAAGCAAGGGGTGCTCCCTAAGTCCCTGCAAA  450

seq1  AGGGTTAATGTCCTAGAGCACAGAGCCTTGTAGTCATTTTCCAGTGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAATGTCCTAGAGCACAGAGCCTTGTAGTCATTTTCCAGTGTTGT  500

seq1  TGTCATTATTTTAACTTTATCTACATCTTCAAAAGTCTTTTTATGTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTATTTTAACTTTATCTACATCTTCAAAAGTCTTTTTATGTTTAT  550

seq1  GAATACAGACCTTAAAAACAACATCTAATTCCAAAGCATCTAGTCAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGACCTTAAAAACAACATCTAATTCCAAAGCATCTAGTCAATGT  600

seq1  TAGGTTTATTATTTCAGGTTCCGCTTATGTCATGTGCTTTCTGTTATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTATTATTTCAGGTTCCGCTTATGTCATGTGCTTTCTGTTATATC  650

seq1  CAGATAAATATGAAGAAGTAATTGTCTCAAACTTAAGTAGA-TTTGTAGT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGATAAATATGAAGAAGTAATTGTCTCAAACTTAAGTAGATTTTGTAGT  700

seq1  ATACATCAACTGTAGAGTTTGAAGGTAACCAGTATGATAGTGGTCATTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCAACTGTAGAGTTTGAAGGTAACCAGTATGATAGTGGTCATTCA  750

seq1  TGTTTTTGGATGTAGTACTGCAGTGTTGATTCGTAATGGAGTTATATAAA  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTTGGATGTAGTACTGCAGTGTTGATTCGTAATGGAGTTATATAAA  799

seq1  TAATGCAAGTACTTACCGCTCGTCAGGTCAGCACACACAGACAGGATGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAGTACTTACCGCTCGTCAGGTCAGCACACACAGACAGGATGCT  849

seq1  GTTATTCCCTTGTTTACTCCGTTGTGTGCTTATTTTGTGTTGCAGAGCAC  899
      |||||| ||||| |||||||||| ||||||||||||||||||||||||||
seq2  GTTATTTCCTTG-TTACTCCGTT-TGTGCTTATTTTGTGTTGCAGAGCAC  897

seq1  AGACTGTAAAGC-TGTGGTTAGCACTGTGGAAGGCAGCTCCTTGGACAGC  948
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  AGACTGTAAAGCTTGTGGTTAGCACTGTGGAAGGCAGCT-CTTGGACAGC  946

seq1  GGTGGATTTTCTCTCCACATTGGTTTGCGTGATGCATACCTCCC  992
      ||||||||||||||||||| |||||||||||||| |||||||||
seq2  GGTGGATTTTCTCTCCACA-TGGTTTGCGTGATG-ATACCTCCC  988

seq1: chr14_57380348_57381526
seq2: B6Ng01-100G20.g_69_1234 (reverse)

seq1  AATAAAAAAGTTCTCCCCAGTTGTTGTGGCTCTATTCTGAAATCCAGTAC  50
      |||||||| ||||  ||||||||||||| || ||||  ||| || ||  |
seq2  AATAAAAAGGTTC-GCCCAGTTGTTGTGCCT-TATTTCGAATTCAAGATC  48

seq1  TCAAGATAATAAGGTGTTCAAACAATGCCTGAGTTACCAG-GTAAGAAG-  98
      || ||   |||  ||| |||| ||||| |||| ||||||| |||||||| 
seq2  TCCAGGATATATAGTGGTCAACCAATGGCTGA-TTACCAGAGTAAGAAGA  97

seq1  AGTCTGTTTTTAAAACAACAAAGTTCTCTCAGAACTAGTATACTGAGTTA  148
      ||||   ||||||||||   ||||| ||| ||||| ||||||||||| ||
seq2  AGTC--GTTTTAAAACACACAAGTTTTCTTAGAAC-AGTATACTGAG-TA  143

seq1  CAACTCCTGTTTCTGAACTCTAATTGGCAAGTTAATACTAGCACACAGCA  198
      ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CAA-TCCTGTTTCTGAACTCTAA-TGGCAAG-TAATACTAGCACACAGCA  190

seq1  CTCAAAAGGCA-GAGACAAGCAGATCTGCAAGTTCAAATCTAGTCTGGTA  247
      ||| ||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  CTC-AAAGGCAGGAGACAAGCAGATCTGCAAGTTC-AATCTAGTCTGGTA  238

seq1  TATATAGAAAGACCCTGTTCTCCACAACCACAACTAATAATAAAGGACTA  297
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  TATATAGAAAGACCCTGTTCTCCAC-ACCACAACTAATAATAAAGGACT-  286

seq1  ACATCTCACTGGCACATCTCCTTTACCTTGCCTCATTAGCATTAACTGGT  347
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  ACATCTCACTGGCACATCTCCTTTACCTT-CCTCA-TAGCATTAACTGGT  334

seq1  GTTCATGTCTAGCTGCTTCCATCTCTGCCTCCAGTTTCTCTTTGGCTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTCTAGCTGCTTCCATCTCTGCCTCCAGTTTCTCTTTGGCTTCT  384

seq1  CTGATGTTTCTATCAACTTGTTCCCGCTGCTGCTTTTCCATTTCATCAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTTCTATCAACTTGTTCCCGCTGCTGCTTTTCCATTTCATCAAG  434

seq1  AGCCTTCCATCGAGACGCATATTCAAATTCAAATGTCCCAGGTTGAGCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCATCGAGACGCATATTCAAATTCAAATGTCCCAGGTTGAGCAA  484

seq1  ACCGTGGTGGCTGTTCTCTTTCCCTGTATTAACATTAAAAACATACAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGGTGGCTGTTCTCTTTCCCTGTATTAACATTAAAAACATACAAAA  534

seq1  GTGTATACTTAAGAGGTAAACAACCACAGAGAATAGTAACTATCACTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATACTTAAGAGGTAAACAACCACAGAGAATAGTAACTATCACTTAT  584

seq1  TGGACATTTATGGCCTGAACAGTTAGGCACCATACATTGTCTCATGACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATTTATGGCCTGAACAGTTAGGCACCATACATTGTCTCATGACAG  634

seq1  GATCATGAAATAGATTCTATAAACACAAATTTATGAAATTTTCAAATAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGAAATAGATTCTATAAACACAAATTTATGAAATTTTCAAATAGT  684

seq1  GCCAAATTAATAATGAAATAATGATTCAAACTTACAAAATGCAATACTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATTAATAATGAAATAATGATTCAAACTTACAAAATGCAATACTCC  734

seq1  AACCTATGCTTTTATTACTAGCTCTCATAAAGACTTTCTGGTTTTCGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATGCTTTTATTACTAGCTCTCATAAAGACTTTCTGGTTTTCGTTC  784

seq1  AACTACTACACATACTGAAACCTGTAACATACAATCCCAGTAAGCCCTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTACACATACTGAAACCTGTAACATACAATCCCAGTAAGCCCTAA  834

seq1  GTTAATAGCTTAGAATCAGATTTTCTTAGTAATAAAAACGTTTTGTTATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGCTTAGAATCAGATTTTCTTAGTAATAAAAACGTTTTGTTATG  884

seq1  TACCAAGCTACGTGGATGGGCTAAAGATAACAAACCAGCTCACTCTTCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCTACGTGGATGGGCTAAAGATAACAAACCAGCTCACTCTTCCT  934

seq1  GTAATTACATATTTAACAGTTTTGCCCTTATAGGACAGGCATTACCAGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTACATATTTAACAGTTTTGCCCTTATAGGACAGGCATTACCAGTC  984

seq1  AACTATTTAATCTCAAATGTGTAATACAATTCCTATGACATATAACTTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTAATCTCAAATGTGTAATACAATTCCTATGACATATAACTTAT  1034

seq1  GGCACTACTATACATATATACCTTTTCAAAATTTAAATAACAAATGAACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTACTATACATATATACCTTTTCAAAATTTAAATAACAAATGAACA  1084

seq1  AAGAAATGACTAAATAAAAAATAAAAATTGGCAAGCTTTGTGGGGCATGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGACTAAATAAAAAATAAAAATTGGCAAGCTTTGTGGGGCATGC  1134

seq1  CTTTAATCCCAGGTAGAAGGATCTATGAATTC  1179
      ||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGGTAGAAGGATCTATGAATTC  1166