BAC Information

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BAC

Clone NameB6Ng01-103D07
Chromosome14 (Build37)
Map Location 30,245,345 - 30,368,301
singlet/doubletdoublet
Overlap geneCacna2d3
Upstream geneErc2, Wnt5a, LOC100040218, Lrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103D07.bB6Ng01-103D07.g
ACCDH911870DH911871
length1,134860
definitionDH911870|Mus musculus domesticus DNA, BAC clone: B6Ng01-103D07, 5' end.DH911871|Mus musculus domesticus DNA, BAC clone: B6Ng01-103D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,367,154 - 30,368,301)(30,245,345 - 30,246,206)
sequence
gaattcaccttgatgttgtctcttggctttgttcactggggaggaactaa
ctccaaagagttccctgttctaccagatgagcacacagaggaaatctctc
accaggaccattttgaaagcatggtctccacggcagagtgcgttcataca
taagggaggaatgtggagttagaatctctgcagtttgatgacccttatga
aaagtacagctctgaaactctgagaggcctggtcttctgtcttgtccaag
agtactgtcaatctccagaggtgtctggagaaggcagtgatgtgtaaaaa
cgctcatcaggagtcctggctcacaggagctgcatggctactgctggctg
ctatcatggtcgattaggcgactggtttggcgctcatttgctgtgactta
gtcatagtccctgctccaggaatcctttgcccactatcagtcttcattgt
aataacccatctgaaggacagttttttttctacaaatcccagacctaaca
cctcagctatttctgaaggttccttacacccttgttcccagcatctgggc
tgcttccctgtgcacctgctctgtgctggcatgtatggcgaagagagggc
agctgcctttatggtgggcccgctgatgccctgaaaccaatgctgcactg
caggtcattgcaggcattggctgcagagggctgaggggatggcggctgcc
tcaggtcttgtggcgatcaatccataccaggggtggatcatttggaaatt
tggagctccaggtttgaagatgacccgtggcaaatagtgacaaaacaaga
tcagaaaggctctagagtgcatgtcacatgggtatccatcaggaaaagaa
acggatgtgatttagctcaagcaaaagtgacccagtcgctgatgttgcca
tgccccgctttaaccatgtgacacataaaaactctagaacttcctcagca
ccctgtcggatagttatagttactcatttcccacttttcagagagagaaa
ctgaggcagaagcttcctgcatcctgtcagagagcccgtgaaagctaagg
tcctattcaggactctgagcctggactccatgagaggcttcggtcttcat
ctgactctgcaagcagaataagacttgtctgtga
gaattctggagaaaggagcaagaataaggaggttggagtggcacttgagg
ttttctccggagccagtcattctagcttcattacttaagtccatatcaat
aatttcagtatatttaggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
caaaaacccaacccagatctttgtggtcttctttgttcaaaagctagtat
acagccatgtataattagagacttggaagtttctatgccttttgccatct
ctactagatagatttcccccttcatactaacctatccctctagcctctcc
tctcagcccttgttgggtcaaggataatctttcaaatgaatgatacttgg
tatacaaaaagcacttggaactacttaaatgagttaaatggattgtgttc
ctccataacaaggaggaagggtgtctctgaatggctacagtggatatttt
aaaaatgcatatccctgccatctagaagtttacagtccagcaaaggccga
ggagagtcagtggattttatggaagtgttctctacaatcagaggttgagt
gtagggaatttaggaaaatggctccgtaggtaaagtgtttgatgtacaag
cacagtacctggatttacatccttagcctgacatgtaaaggatagacaca
tgtctgtgaccctagtactgatgatgtgtggggggtggacaggcaaaggt
ggaccctaggggctcaccagacagacatgctagctgaaattgaaagtttc
aagatcagtgaaaggcaatctaaaaccaataataatgaggtggagagcaa
tagaaaagatacacttatttgacctcgagcctctaagcaggcacaggcaa
acttgcttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30367154_30368301
seq2: B6Ng01-103D07.b_45_1178 (reverse)

seq1  TCACAGACAAGTCTTATTCTGCCTTGCAGGAGTTCAAGATGAAGACGGAG  50
      ||||||||||||||||||||| |||||| ||||   |||||||||| || 
seq2  TCACAGACAAGTCTTATTCTG-CTTGCA-GAGT--CAGATGAAGACCGAA  46

seq1  GCCTCCTTCATTGGGAGTTCAGGGCTCAGAGGTTCTGAATGGGACCTTAG  100
      |||||  ||||  ||||| || |||||||| || |||||| |||||||||
seq2  GCCTC--TCAT--GGAGTCCA-GGCTCAGA-GTCCTGAATAGGACCTTAG  90

seq1  GCCTTTCACGGGCTCTCTGACAGGGTTGCAGGGAGCTTCTGCCTCAGTTT  150
        |||||||||||||||||||| || |||||| |||||||||||||||||
seq2  --CTTTCACGGGCTCTCTGACA-GGATGCAGGAAGCTTCTGCCTCAGTTT  137

seq1  CTCTCTCTGAAAAGTGGG-AATG-GTAACTATAACTATCCGACAGGGTTG  198
      |||||||||||||||||| |||| ||||||||||||||||||||||| ||
seq2  CTCTCTCTGAAAAGTGGGAAATGAGTAACTATAACTATCCGACAGGG-TG  186

seq1  CTGAGGAAGTTCTAGAGTTTTTATGTGTCACATGGTTAAAGCGGGGCATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAGTTCTAGAGTTTTTATGTGTCACATGGTTAAAGCGGGGCATG  236

seq1  GCAACATCAGCGACCTGGGTCACCTTTTGCTTGAGCTAAATCACATCCGT  298
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  GCAACATCAGCGA-CTGGGTCA-CTTTTGCTTGAGCTAAATCACATCCGT  284

seq1  TTCTTTTCCTGATGGATACCCATGTGACATGCACTCTAGAGCCTTTCTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCTGATGGATACCCATGTGACATGCACTCTAGAGCCTTTCTGA  334

seq1  TCTTGTTTTGTCACTATTTGCCACGGGTCATCTTCAAACCTGGAGCTCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTGTCACTATTTGCCACGGGTCATCTTCAAACCTGGAGCTCCA  384

seq1  AATTTCCAAATGATCCACCCCTGGTATGGATTGATCGCCACAAGACCTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAAATGATCCACCCCTGGTATGGATTGATCGCCACAAGACCTGA  434

seq1  GGCAGCCGCCATCCCCTCAGCCCTCTGCAGCCAATGCCTGCAATGACCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCGCCATCCCCTCAGCCCTCTGCAGCCAATGCCTGCAATGACCTG  484

seq1  CAGTGCAGCATTGGTTTCAGGGCATCAGCGGGCCCACCATAAAGGCAGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGCATTGGTTTCAGGGCATCAGCGGGCCCACCATAAAGGCAGCT  534

seq1  GCCCTCTCTTCGCCATACATGCCAGCACAGAGCAGGTGCACAGGGAAGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCTTCGCCATACATGCCAGCACAGAGCAGGTGCACAGGGAAGCA  584

seq1  GCCCAGATGCTGGGAACAAGGGTGTAAGGAACCTTCAGAAATAGCTGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATGCTGGGAACAAGGGTGTAAGGAACCTTCAGAAATAGCTGAGG  634

seq1  TGTTAGGTCTGGGATTTGTAGAAAAAAAACTGTCCTTCAGATGGGTTATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTCTGGGATTTGTAGAAAAAAAACTGTCCTTCAGATGGGTTATT  684

seq1  ACAATGAAGACTGATAGTGGGCAAAGGATTCCTGGAGCAGGGACTATGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAGACTGATAGTGGGCAAAGGATTCCTGGAGCAGGGACTATGAC  734

seq1  TAAGTCACAGCAAATGAGCGCCAAACCAGTCGCCTAATCGACCATGATAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCACAGCAAATGAGCGCCAAACCAGTCGCCTAATCGACCATGATAG  784

seq1  CAGCCAGCAGTAGCCATGCAGCTCCTGTGAGCCAGGACTCCTGATGAGCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCAGTAGCCATGCAGCTCCTGTGAGCCAGGACTCCTGATGAGCG  834

seq1  TTTTTACACATCACTGCCTTCTCCAGACACCTCTGGAGATTGACAGTACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACACATCACTGCCTTCTCCAGACACCTCTGGAGATTGACAGTACT  884

seq1  CTTGGACAAGACAGAAGACCAGGCCTCTCAGAGTTTCAGAGCTGTACTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACAAGACAGAAGACCAGGCCTCTCAGAGTTTCAGAGCTGTACTTT  934

seq1  TCATAAGGGTCATCAAACTGCAGAGATTCTAACTCCACATTCCTCCCTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGGTCATCAAACTGCAGAGATTCTAACTCCACATTCCTCCCTTA  984

seq1  TGTATGAACGCACTCTGCCGTGGAGACCATGCTTTCAAAATGGTCCTGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAACGCACTCTGCCGTGGAGACCATGCTTTCAAAATGGTCCTGGT  1034

seq1  GAGAGATTTCCTCTGTGTGCTCATCTGGTAGAACAGGGAACTCTTTGGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTTCCTCTGTGTGCTCATCTGGTAGAACAGGGAACTCTTTGGAG  1084

seq1  TTAGTTCCTCCCCAGTGAACAAAGCCAAGAGACAACATCAAGGTGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCTCCCCAGTGAACAAAGCCAAGAGACAACATCAAGGTGAATTC  1134

seq1: chr14_30245345_30246206
seq2: B6Ng01-103D07.g_70_929

seq1  GAATTCTGGAGAAAGGAGCAAGAATAAGGAGGTTGGAGTGGCACTTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGAAAGGAGCAAGAATAAGGAGGTTGGAGTGGCACTTGAGG  50

seq1  TTTTCTCCGGAGCCAGTCATTCTAGCTTCATTACTTAAGTCCATATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCGGAGCCAGTCATTCTAGCTTCATTACTTAAGTCCATATCAAT  100

seq1  AATTTCAGTATATTTAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGTATATTTAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  150

seq1  CAAAAACCCAACCCAGATCTTTGTGGTCTTCTTTGTTCAAAAGCTAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCCAACCCAGATCTTTGTGGTCTTCTTTGTTCAAAAGCTAGTAT  200

seq1  ACAGCCATGTATAATTAGAGACTTGGAAGTTTCTATGCCTTTTGCCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATGTATAATTAGAGACTTGGAAGTTTCTATGCCTTTTGCCATCT  250

seq1  CTACTAGATAGATTTCCCCCTTCATACTAACCTATCCCTCTAGCCTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGATAGATTTCCCCCTTCATACTAACCTATCCCTCTAGCCTCTCC  300

seq1  TCTCAGCCCTTGTTGGGTCAAGGATAATCTTTCAGATGAATGATACTTGG  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTCAGCCCTTGTTGGGTCAAGGATAATCTTTCAAATGAATGATACTTGG  350

seq1  TATACAAAAAGCACTTGGAACTACTTAAATGAGTTAAATGGATTGTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAAAGCACTTGGAACTACTTAAATGAGTTAAATGGATTGTGTTC  400

seq1  CTCCATAACAAGGAGGAAGGGTGTCTCTGAATGGCTACAGTGGATATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAACAAGGAGGAAGGGTGTCTCTGAATGGCTACAGTGGATATTTT  450

seq1  AAAAATGCATATCCCTGCCATCTAGAAGTTTACAGTCCAGCAGAGGCCGA  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAATGCATATCCCTGCCATCTAGAAGTTTACAGTCCAGCAAAGGCCGA  500

seq1  GGAGAGTCAGTGGATTTTATGGAAGTGTTCTCTACAATCAGAGGTTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTCAGTGGATTTTATGGAAGTGTTCTCTACAATCAGAGGTTGAGT  550

seq1  GTAGGGAATTTAGGAAAATGGCTCCGTAGGTAAAGTGTTTGATGTACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAATTTAGGAAAATGGCTCCGTAGGTAAAGTGTTTGATGTACAAG  600

seq1  CACAGTACCTGGATTTACATCCTTAGCCTGACATGTAAAGGATAGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTACCTGGATTTACATCCTTAGCCTGACATGTAAAGGATAGACACA  650

seq1  TGTCTGTGACCCTAGTACTGATGATGTGTGGGGGGTGGACAGGCAAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGACCCTAGTACTGATGATGTGTGGGGGGTGGACAGGCAAAGGT  700

seq1  GGACCCTAGGGGCTCACCAGACAGACATGCTAGCTGAAATTGAAAGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTAGGGGCTCACCAGACAGACATGCTAGCTGAAATTGAAAGTTTC  750

seq1  AAGATCAGTGAAAGGCAATCTAAAACCAAATAATAATGAGGTGGAGAGCA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGATCAGTGAAAGGCAATCTAAAACC-AATAATAATGAGGTGGAGAGCA  799

seq1  ATAGAAAAGGATACACTTAGCTGACCTCGAGCCTCTAAGCAGGCACAGGC  850
      |||||||| ||||||||||  |||||||||||||||||||||||||||||
seq2  ATAGAAAA-GATACACTTATTTGACCTCGAGCCTCTAAGCAGGCACAGGC  848

seq1  AAACATGCTTGT  862
      |||| |||||||
seq2  AAACTTGCTTGT  860