BAC Information

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BAC

Clone NameB6Ng01-106A13
Chromosome14 (Build37)
Map Location 105,004,629 - 105,165,815
singlet/doubletdoublet
Overlap geneD130009I18Rik
Upstream geneScel, LOC100043448, Slain1, Ednrb, Pou4f1, 2610206B13Rik
Downstream geneLOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106A13.bB6Ng01-106A13.g
ACCDH913886DH913887
length1,1131,093
definitionDH913886|Mus musculus domesticus DNA, BAC clone: B6Ng01-106A13, 5' end.DH913887|Mus musculus domesticus DNA, BAC clone: B6Ng01-106A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,164,689 - 105,165,815)(105,004,629 - 105,005,822)
sequence
gaattccagtttgaacaagctgtctatattgcatgtctttcatgccaaag
aattccaaaaactgtgctaatttgaatgctaactctgactttaatgacaa
aaaatagcatagatatggggaccagtaagacaaaccatggtagcctttag
gttagttataaatccattaagacttgcctttcagatttatacaaaatgat
aataggacattttgagcaggctgaggaaatgaaatctttgtttttggtaa
taggtggagcagcgcttatctgtctgtctgtggtttgctatgcctaccaa
cacagtgctgagggcagtgctccctgctcacttgccaaccaacaaagaaa
acccagtggtccccattctcaaccctatcttcccaatgaccttgactttg
gtttgtagagcagcatcagcaacagcaatgcattaatctggttttagcag
cctaatcaggtcatgcattcttcctgcctggaaaacctacagcttcccac
acacctcctctttagatatgaagtgagccaatgttatgaaattaagaacc
ttgatgtatttgtaatttctgacagaattttggtatcaattaaaaaaaat
tacctggattttagaatgattatctgcttatatcgtccttctggatttta
tggtacattacgtttatagtctctatttagcttttggttgccttggaaga
ataggtttcctttcatcttattaatagaggatggggttagtaatctgaat
gggacaaataactttttcaaactatttgcttgagttattttattaacagg
aattttgatcttaatttatggcatagtgttactgtattttaattttttat
tcaattaaagtacaattatatcatttgccccctctctctttcctcataac
ctttcatgtctgctctcccgactcatcccaatccatagcgtcctcctctc
taattactatgcatacacacatataaaggatagcacagttgcacctggtg
agtctgtacagcgttactgcatgtagatgctgtatggctgccatttagta
ctgcatagccagtcaggttagttagctagtgctgagatttatgatgtagc
ttccctgtcatac
gaattcaaaccacctcttctagtcctcatactagcaagaaataagttttc
caaagcaagtttgaaatttgttggcaagtccagtggaaaatccttcagcc
attgcttaagttccgcctcttctggggatatataaaaccctctgtctcct
gggttgtcaggtcagcgcttttgaggagcacttagaaagaacggcatccc
cgcctttccatcaatgacagccgaaagccctaactactagtaatggcata
atggggagctaagagagaactccagaaagggtctcaggaaatactttccc
agagacagtcaatacgaagatgaggttgccttccagagtgagcggtcaag
gcttgtcaccaggattctgcccatttgtgctataaatactgcggctgctc
tcatggctctgcgcgttgatcaagcaccgcttgtgccgcgggctccttgt
ggaacagacttagacagagtgtctgcaagagagagcactccaagtgttct
gtaggaaacaactcccgagctgacaaggagagaggaatggatagtctcct
tcccaattctctgtttctattataaattagatgcctacttaaaaaatgag
caaagcataaataatttaaaagaaatcaaaggcctttattaccaccactg
tacccggcttctgaagctagctcgtctgccctggcacatttatggatgtt
tgctctgctttgctctctatttctcccacaaggaagtgtgtactaaagaa
gaaaaacaaaataaaatgaaaagtaaaggaaagaaacctcttggtatttt
tttcttgatgtggttcagcctctgtctgaaacatgcctgcctccctttct
ttcccaaaggaagggctgggttgctttaaaaccggaggtggggatagctc
acagacaaagccaccagggatgtcctgggaatattcaaaagaagtcttca
cagagcctgttgtcctgttgtccctttccatccttgcacattcttgtagc
tctggttgcaactttgtctccctccttttctcttcttctcgtctctcatc
tcgtcccacttctttcttcctcctcccttccctttccttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_105164689_105165815
seq2: B6Ng01-106A13.b_45_1157 (reverse)

seq1  GTATGACAGGGAAGCTACACTCATTAAATCTCAGCAACCTAGCTAACTAA  50
      ||||||||||||||||||| ||| ||||||||||||  ||||||||||||
seq2  GTATGACAGGGAAGCTACA-TCA-TAAATCTCAGCA--CTAGCTAACTAA  46

seq1  CCCTTGACTGGCTATGCAGTACTAAATGGGCAGCCATACAGCATCTACAT  100
      ||  ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CC--TGACTGGCTATGCAGTACTAAAT-GGCAGCCATACAGCATCTACAT  93

seq1  GCAAGTAACGCTGTACAGACTCACCAGGTTGCCTTCTGTGCTTATTCCTT  150
      || ||||||||||||||||||||||||||   |  |||||||   |||||
seq2  GC-AGTAACGCTGTACAGACTCACCAGGT--GCAACTGTGCT--ATCCTT  138

seq1  TATATGTGTGTATGCATAGTAATTAGAGAGGAGGACGCTATGGATTTGGG  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATATGTGTGTATGCATAGTAATTAGAGAGGAGGACGCTATGGA-TTGGG  187

seq1  ATGAGTCGGGAGAGCAGACATGAAAGGTTTATGAGGAAAGAGAGAGGGGG  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGAGTCGGGAGAGCAGACATGAAAGG-TTATGAGGAAAGAGAGAGGGGG  236

seq1  CAAATGATATAATTGTACTTTAATTGAATAAAAAATTAAAATACAGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATATAATTGTACTTTAATTGAATAAAAAATTAAAATACAGTAAC  286

seq1  ACTATGCCATAAATTAAGATCAAAATTCCTGTTAATAAAATAACTCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCATAAATTAAGATCAAAATTCCTGTTAATAAAATAACTCAAGC  336

seq1  AAATAGTTTGAAAAAGTTATTTGTCCCATTCAGATTACTAACCCCATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTTGAAAAAGTTATTTGTCCCATTCAGATTACTAACCCCATCCT  386

seq1  CTATTAATAAGATGAAAGGAAACCTATTCTTCCAAGGCAACCAAAAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATAAGATGAAAGGAAACCTATTCTTCCAAGGCAACCAAAAGCTA  436

seq1  AATAGAGACTATAAACGTAATGTACCATAAAATCCAGAAGGACGATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGACTATAAACGTAATGTACCATAAAATCCAGAAGGACGATATAA  486

seq1  GCAGATAATCATTCTAAAATCCAGGTAATTTTTTTTAATTGATACCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAATCATTCTAAAATCCAGGTAATTTTTTTTAATTGATACCAAAA  536

seq1  TTCTGTCAGAAATTACAAATACATCAAGGTTCTTAATTTCATAACATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCAGAAATTACAAATACATCAAGGTTCTTAATTTCATAACATTGG  586

seq1  CTCACTTCATATCTAAAGAGGAGGTGTGTGGGAAGCTGTAGGTTTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCATATCTAAAGAGGAGGTGTGTGGGAAGCTGTAGGTTTTCCAG  636

seq1  GCAGGAAGAATGCATGACCTGATTAGGCTGCTAAAACCAGATTAATGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGAATGCATGACCTGATTAGGCTGCTAAAACCAGATTAATGCAT  686

seq1  TGCTGTTGCTGATGCTGCTCTACAAACCAAAGTCAAGGTCATTGGGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGCTGATGCTGCTCTACAAACCAAAGTCAAGGTCATTGGGAAGA  736

seq1  TAGGGTTGAGAATGGGGACCACTGGGTTTTCTTTGTTGGTTGGCAAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTGAGAATGGGGACCACTGGGTTTTCTTTGTTGGTTGGCAAGTGA  786

seq1  GCAGGGAGCACTGCCCTCAGCACTGTGTTGGTAGGCATAGCAAACCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGCACTGCCCTCAGCACTGTGTTGGTAGGCATAGCAAACCACAG  836

seq1  ACAGACAGATAAGCGCTGCTCCACCTATTACCAAAAACAAAGATTTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGATAAGCGCTGCTCCACCTATTACCAAAAACAAAGATTTCATT  886

seq1  TCCTCAGCCTGCTCAAAATGTCCTATTATCATTTTGTATAAATCTGAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCCTGCTCAAAATGTCCTATTATCATTTTGTATAAATCTGAAAG  936

seq1  GCAAGTCTTAATGGATTTATAACTAACCTAAAGGCTACCATGGTTTGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCTTAATGGATTTATAACTAACCTAAAGGCTACCATGGTTTGTCT  986

seq1  TACTGGTCCCCATATCTATGCTATTTTTTGTCATTAAAGTCAGAGTTAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTCCCCATATCTATGCTATTTTTTGTCATTAAAGTCAGAGTTAGC  1036

seq1  ATTCAAATTAGCACAGTTTTTGGAATTCTTTGGCATGAAAGACATGCAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATTAGCACAGTTTTTGGAATTCTTTGGCATGAAAGACATGCAAT  1086

seq1  ATAGACAGCTTGTTCAAACTGGAATTC  1127
      |||||||||||||||||||||||||||
seq2  ATAGACAGCTTGTTCAAACTGGAATTC  1113

seq1: chr14_105004629_105005822
seq2: B6Ng01-106A13.g_68_1160

seq1  GAATTCAAACCACCTCTTCTAGTCCTCATACTAGCAAGAAATAAGTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCACCTCTTCTAGTCCTCATACTAGCAAGAAATAAGTTTTC  50

seq1  CAAAGCAAGTTTGAAATTTGTTGGCAAGTCCAGTGGAAAATCCTTCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAGTTTGAAATTTGTTGGCAAGTCCAGTGGAAAATCCTTCAGCC  100

seq1  ATTGCTTAAGTTCCGCCTCTTCTGGGGATATATAAAACCCTCTGTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTAAGTTCCGCCTCTTCTGGGGATATATAAAACCCTCTGTCTCCT  150

seq1  GGGTTGTCAGGTCAGCGCTTTTGAGGAGCACTTAGAAAGAACGGCATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTCAGGTCAGCGCTTTTGAGGAGCACTTAGAAAGAACGGCATCCC  200

seq1  CGCCTTTCCATCAATGACAGCCGAAAGCCCTAACTACTAGTAATGGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTCCATCAATGACAGCCGAAAGCCCTAACTACTAGTAATGGCATA  250

seq1  ATGGGGAGCTAAGAGAGAACTCCAGAAAGGGTCTCAGGAAATACTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAGCTAAGAGAGAACTCCAGAAAGGGTCTCAGGAAATACTTTCCC  300

seq1  AGAGACAGTCAATACGAAGATGAGGTTGCCTTCCAGAGTGAGCGGTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGTCAATACGAAGATGAGGTTGCCTTCCAGAGTGAGCGGTCAAG  350

seq1  GCTTGTCACCAGGATTCTGCCCATTTGTGCTATAAATACTGCGGCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCACCAGGATTCTGCCCATTTGTGCTATAAATACTGCGGCTGCTC  400

seq1  TCATGGCTCTGCGCGTTGATCAAGCACCGCTTGTGCCGCGGGCTCCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTCTGCGCGTTGATCAAGCACCGCTTGTGCCGCGGGCTCCTTGT  450

seq1  GGAACAGACTTAGACAGAGTGTCTGCAAGAGAGAGCACTCCAAGTGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGACTTAGACAGAGTGTCTGCAAGAGAGAGCACTCCAAGTGTTCT  500

seq1  GTAGGAAACAACTCCCGAGCTGACAAGGAGAGAGGAATGGATAGTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAACAACTCCCGAGCTGACAAGGAGAGAGGAATGGATAGTCTCCT  550

seq1  TCCCAATTCTCTGTTTCTATTATAAATTAGATGCCTACTTAAAAAATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTCTCTGTTTCTATTATAAATTAGATGCCTACTTAAAAAATGAG  600

seq1  CAAAGCATAAATAATTTAAAAGAAATCAAAGGCCTTTATTACCACCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATAAATAATTTAAAAGAAATCAAAGGCCTTTATTACCACCACTG  650

seq1  TACCCGGCTTCTGAAGCTAGCTCGTCTGCCCTGGCACATTTATGGATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGGCTTCTGAAGCTAGCTCGTCTGCCCTGGCACATTTATGGATGTT  700

seq1  TGCTCTGCTTTGCTCTCTATTTCTCCCACAAGGAAGTGTGTACTAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTTTGCTCTCTATTTCTCCCACAAGGAAGTGTGTACTAAAGAA  750

seq1  GAAAAACAAAATAAAATGAAAAGTAAAGGAAAGAAACCTCTTGGTATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAAATAAAATGAAAAGTAAAGGAAAGAAACCTCTTGGTATTTT  800

seq1  TTTCTTGATGTGGTTCAGCCTCTGTCTGAAACATGCCTGCCTCCCTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGATGTGGTTCAGCCTCTGTCTGAAACATGCCTGCCTCCCTTTCT  850

seq1  TTCCCAAAGGAAGGGCTGGGTTGCTTTAAAACCGGAGGTGGGGATAGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAGGAAGGGCTGGGTTGCTTTAAAACCGGAGGTGGGGATAGCTC  900

seq1  ACAGGACAAAGCCACCAGGGATGTCCTGGGAAATATTCAAAAAGAAGTCT  950
      ||| |||||||||||||||||||||||||| ||||||| |||||||||||
seq2  ACA-GACAAAGCCACCAGGGATGTCCTGGG-AATATTC-AAAAGAAGTCT  947

seq1  TCACAGAGCCTGTTGTCCTGTTGTCCCTTTCCATCCTTGCAACATCTTGT  1000
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  TCACAGAGCCTGTTGTCCTGTTGTCCCTTTCCATCCTTGCACATTCTTGT  997

seq1  AGCTCTGGTTGCAACTTTGTCTCCCTCCTTTTCTCTTTCTTCTCCTTCTC  1050
      |||||||||||||||||||||||||||||||||||||       ||||||
seq2  AGCTCTGGTTGCAACTTTGTCTCCCTCCTTTTCTCTT-------CTTCTC  1040

seq1  CTCCTTCTCCTTCTCCTTCTTCTTTTTCTTTCT-CTTCCTTCCCTTCCCT  1099
       ||  ||  ||  |||  ||||  |||||| || || ||||||||| |||
seq2  GTCTCTCATCTCGTCCCACTTC--TTTCTTCCTCCTCCCTTCCCTTTCCT  1088

seq1  TCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCT  1149
      ||| |                                             
seq2  TCCTT---------------------------------------------  1093

seq1  TCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTTCCTTCCTT  1194
                                                   
seq2  ---------------------------------------------  1093