BAC Information

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BAC

Clone NameB6Ng01-107H19
Chromosome14 (Build37)
Map Location 56,371,216 - 56,507,421
singlet/doubletdoublet
Overlap gene2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik
Upstream geneSlc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1
Downstream gene2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107H19.bB6Ng01-107H19.g
ACCDH914945DH914946
length1,1341,066
definitionDH914945|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H19, 5' end.DH914946|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,506,261 - 56,507,421)(56,371,216 - 56,372,289)
sequence
gaattcacaaggagggtaaatgaatggagatggatcctgagataaagagg
ttgatttgattcactgagaggtggggctaaggccatagagaaagcagatc
cctaagaaaacctggggctctgactccgacattcccttccatcctgagtc
ttgtggcctctagccatatcctgttccagacactcctagcattcaaagac
tgtgtttctgccttctgtttactttaaaggtttgctctccttttcccaga
atgttcaaacaatttctctacatttgggaattctgtcagctctatatgcc
accagcttttgcagatctcaattgcacagtatttcctagacaataaagca
ctctatataaatacgaggtgaatagcgagcaggcaaaccatcactgtcta
cagcccgtctcctctcacctgcagagctgagctacccatcatttgtccca
ctgaaactagctctactactgaggctagaagacagaggtcgggagcatct
ctgtcctactccaaatcccactagattccttagatagcaaactcggggcc
aggagaggaacaattacctgtcatcataagaagaaatcctcttgccatcc
atgactcgtgagggtgtcagggaaagcagactcagggaatacaacttctg
caggaagtgactctctgtagaacaaagtgcaacagggttctcaaggtgga
cccagcctcaccaggacacagatgaccagacccaacttacctctgacctt
ggaatctttactgaagcgccactgaggcacaaagacggttatgtcacggt
ggccacggtcccagaagtactgtacagcgagagcaataccccgactggaa
aagtaatgctggagtccgtgcctgttacggagagcgtcgacgtcaggact
cagagaaggctgcggcacaagcccctcagaggctgtctccagaactcagt
cccaccagctacttacaccatggccacgtgctgcatcatgacaatgtgac
ggagatctggctgccaggcacattggcaagcacaggtgaaagatcctgta
gctctgcaacgctgcgtgcagtcacagtgcccacgagtgcctccttcacg
gagaccctcgccaatccagctgctgctgtctccc
gaattcagttaagaggctgggagtgagaacaaggcaggcgagactctaca
gtcatggagcatcctttgctgttgagccagatcttatctgtctggaaaat
cacggtgttagagatggggtccatctcaggagtcactgtgctttgtcttc
ctatctaggcatttcattgtgcagagcccccgtcccggcaagcagcctgc
gtgcctctctttgctgctttgttggcttatgaggtatactatgaactaat
ggaggaggagggggctgtgcctgcagagcatcaggtaagatagggctatt
gggggccaggcttcttagggcttgggaaaccccttgggctaacatgagac
ttctgacccctttgaaaagggtgcagtaacctagcgatgccgtcatccac
ctgcttcctaattccctatttctgtactcccaggttgaaatggccacagc
cagagcgctgagggaggtgactgtacttgggtctctactgctccagcatt
tgctgtatttttctaatcctggacttgtacttcgaagtctgagtgccttg
accggaccacagcttctgactctggcccaaagccccgctggctctcatgt
atttgatgccatcctgagtagcccctcagtgacacacaagcagcgtcgtc
gtgtgctgaagaccctaaaggttagacttgtgctctagtcccctccgtta
ctgctttagagaaatgagctgccaatctcaggattggacctgagagctgg
aggcaggatcagtccatagttcctgtgttgtttaaactgtgcctctcagg
gcttctgaagttatttctccgtttccagaacacacctgtgtacttccctg
gagggactttacctttctttgtctctattcagggacagtatgtggctctt
gcctgtagccgccatggcagccgtgtattagatgccatctggagtgagca
gctttgggggctccgaggaaattgctgctgaatggggtgagtaccactgc
caattgggtgagtgtttctagctcttctgtacccggtagctgatggtcag
cagattcaaagtgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56506261_56507421
seq2: B6Ng01-107H19.b_45_1178 (reverse)

seq1  GGGAGACAAGCAGCAGGCTGGAGCTCGAGGCCGAGGGTCTCCGTGGAAGC  50
      ||||||| ||||||| ||||||       | ||||||||||||| |||| 
seq2  GGGAGAC-AGCAGCA-GCTGGA-----TTGGCGAGGGTCTCCGT-GAAG-  41

seq1  GAGGCACTCGTGGGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGGAA  100
      ||||||||||||||    |||  |||||| |||||||||| || |||  |
seq2  GAGGCACTCGTGGG---CACT--GTGACT-GCACGCAGCG-TTGCAG--A  82

seq1  GCCTTACAGGATCCTTTCACCCTGTGCCTTGCCAATGTGCCTGGCCAGCC  150
      ||  |||||||| |||||| |||||| ||||||||||||||||| |||||
seq2  GC--TACAGGAT-CTTTCA-CCTGTG-CTTGCCAATGTGCCTGG-CAGCC  126

seq1  AGATCTCCGTCACATTGTCATTGATGGCAGCAACGTGGCCATGGTGTAAG  200
      |||||||||||||||||||| |||| ||||| ||||||||||||||||||
seq2  AGATCTCCGTCACATTGTCA-TGAT-GCAGC-ACGTGGCCATGGTGTAAG  173

seq1  TAGCTGGTGGGACTGAGTTCTGGAGACAGCCTCTGAGGGGCTTGTGCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTGGGACTGAGTTCTGGAGACAGCCTCTGAGGGGCTTGTGCCGC  223

seq1  AGCCTTCTCTGGGTCCTGACGTCGACGCTCTCCGTAACAGGCACGGACTC  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTCTGAGTCCTGACGTCGACGCTCTCCGTAACAGGCACGGACTC  273

seq1  CAGCATTACTTTTCCAGTCGGGGTATTGCTCTCGCTGTACAGTACTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTACTTTTCCAGTCGGGGTATTGCTCTCGCTGTACAGTACTTCTG  323

seq1  GGACCGTGGCCACCGTGACATAACCGTCTTTGTGCCTCAGTGGCGCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGTGGCCACCGTGACATAACCGTCTTTGTGCCTCAGTGGCGCTTCA  373

seq1  GTAAAGATTCCAAGGTCAGAGGTAAGTTGGGTCTGGTCATCTGTGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATTCCAAGGTCAGAGGTAAGTTGGGTCTGGTCATCTGTGTCCTG  423

seq1  GTGAGGCTGGGTCCACCTTGAGAACCCTGTTGCACTTTGTTCTACAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCTGGGTCCACCTTGAGAACCCTGTTGCACTTTGTTCTACAGAGA  473

seq1  GTCACTTCCTGCAGAAGTTGTATTCCCTGAGTCTGCTTTCCCTGACACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTCCTGCAGAAGTTGTATTCCCTGAGTCTGCTTTCCCTGACACCC  523

seq1  TCACGAGTCATGGATGGCAAGAGGATTTCTTCTTATGATGACAGGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAGTCATGGATGGCAAGAGGATTTCTTCTTATGATGACAGGTAATT  573

seq1  GTTCCTCTCCTGGCCCCGAGTTTGCTATCTAAGGAATCTAGTGGGATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTCCTGGCCCCGAGTTTGCTATCTAAGGAATCTAGTGGGATTTG  623

seq1  GAGTAGGACAGAGATGCTCCCGACCTCTGTCTTCTAGCCTCAGTAGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGACAGAGATGCTCCCGACCTCTGTCTTCTAGCCTCAGTAGTAGA  673

seq1  GCTAGTTTCAGTGGGACAAATGATGGGTAGCTCAGCTCTGCAGGTGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTCAGTGGGACAAATGATGGGTAGCTCAGCTCTGCAGGTGAGAG  723

seq1  GAGACGGGCTGTAGACAGTGATGGTTTGCCTGCTCGCTATTCACCTCGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGGCTGTAGACAGTGATGGTTTGCCTGCTCGCTATTCACCTCGTA  773

seq1  TTTATATAGAGTGCTTTATTGTCTAGGAAATACTGTGCAATTGAGATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAGAGTGCTTTATTGTCTAGGAAATACTGTGCAATTGAGATCTG  823

seq1  CAAAAGCTGGTGGCATATAGAGCTGACAGAATTCCCAAATGTAGAGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTGGTGGCATATAGAGCTGACAGAATTCCCAAATGTAGAGAAAT  873

seq1  TGTTTGAACATTCTGGGAAAAGGAGAGCAAACCTTTAAAGTAAACAGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAACATTCTGGGAAAAGGAGAGCAAACCTTTAAAGTAAACAGAAG  923

seq1  GCAGAAACACAGTCTTTGAATGCTAGGAGTGTCTGGAACAGGATATGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACACAGTCTTTGAATGCTAGGAGTGTCTGGAACAGGATATGGCT  973

seq1  AGAGGCCACAAGACTCAGGATGGAAGGGAATGTCGGAGTCAGAGCCCCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCACAAGACTCAGGATGGAAGGGAATGTCGGAGTCAGAGCCCCAG  1023

seq1  GTTTTCTTAGGGATCTGCTTTCTCTATGGCCTTAGCCCCACCTCTCAGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTAGGGATCTGCTTTCTCTATGGCCTTAGCCCCACCTCTCAGTG  1073

seq1  AATCAAATCAACCTCTTTATCTCAGGATCCATCTCCATTCATTTACCCTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATCAACCTCTTTATCTCAGGATCCATCTCCATTCATTTACCCTC  1123

seq1  CTTGTGAATTC  1161
      |||||||||||
seq2  CTTGTGAATTC  1134

seq1: chr14_56371216_56372289
seq2: B6Ng01-107H19.g_68_1133

seq1  GAATTCAGTTAAGAGGCTGGGAGTGAGAACAAGGCAGGCGAGACTCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAAGAGGCTGGGAGTGAGAACAAGGCAGGCGAGACTCTACA  50

seq1  GTCATGGAGCATCCTTTGCTGTTGAGCCAGATCTTATCTGTCTGGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGAGCATCCTTTGCTGTTGAGCCAGATCTTATCTGTCTGGAAAAT  100

seq1  CACGGTGTTAGAGATGGGGTCCATCTCAGGAGTCACTGTGCTTTGTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGTTAGAGATGGGGTCCATCTCAGGAGTCACTGTGCTTTGTCTTC  150

seq1  CTATCTAGGCATTTCATTGTGCAGAGCCCCCGTCCCGGCAAGCAGCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAGGCATTTCATTGTGCAGAGCCCCCGTCCCGGCAAGCAGCCTGC  200

seq1  GTGCCTCTCTTTGCTGCTTTGTTGGCTTATGAGGTATACTATGAACTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTCTTTGCTGCTTTGTTGGCTTATGAGGTATACTATGAACTAAT  250

seq1  GGAGGAGGAGGGGGCTGTGCCTGCAGAGCATCAGGTAAGATAGGGCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGGGGCTGTGCCTGCAGAGCATCAGGTAAGATAGGGCTATT  300

seq1  GGGGGCCAGGCTTCTTAGGGCTTGGGAAACCCCTTGGGCTAACATGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCAGGCTTCTTAGGGCTTGGGAAACCCCTTGGGCTAACATGAGAC  350

seq1  TTCTGACCCCTTTGAAAAGGGTGCAGTAACCTAGCGATGCCGTCATCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACCCCTTTGAAAAGGGTGCAGTAACCTAGCGATGCCGTCATCCAC  400

seq1  CTGCTTCCTAATTCCCTATTTCTGTACTCCCAGGTTGAAATGGCCACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTAATTCCCTATTTCTGTACTCCCAGGTTGAAATGGCCACAGC  450

seq1  CAGAGCGCTGAGGGAGGTGACTGTACTTGGGTCTCTACTGCTCCAGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCGCTGAGGGAGGTGACTGTACTTGGGTCTCTACTGCTCCAGCATT  500

seq1  TGCTGTATTTTTCTAATCCTGGACTTGTACTTCGAAGTCTGAGTGCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATTTTTCTAATCCTGGACTTGTACTTCGAAGTCTGAGTGCCTTG  550

seq1  ACCGGACCACAGCTTCTGACTCTGGCCCAAAGCCCCGCTGGCTCTCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGACCACAGCTTCTGACTCTGGCCCAAAGCCCCGCTGGCTCTCATGT  600

seq1  ATTTGATGCCATCCTGAGTAGCCCCTCAGTGACACACAAGCAGCGTCGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGCCATCCTGAGTAGCCCCTCAGTGACACACAAGCAGCGTCGTC  650

seq1  GTGTGCTGAAGACCCTAAAGGTTAGACTTGTGCTCTAGTCCCCTCCGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGAAGACCCTAAAGGTTAGACTTGTGCTCTAGTCCCCTCCGTTA  700

seq1  CTGCTTTAGAGAAATGAGCTGCCAATCTCAGGATTGGACCTGAGAGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAGAGAAATGAGCTGCCAATCTCAGGATTGGACCTGAGAGCTGG  750

seq1  AGGCAGGATCAGTCCATAGTTCCTGTGTTGTTTAAACTGTGCCTCTCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGATCAGTCCATAGTTCCTGTGTTGTTTAAACTGTGCCTCTCAGG  800

seq1  GCTTCTGAAGTTATTTCTCCGTTTCCAGAACACACCTGTGTACTTCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAAGTTATTTCTCCGTTTCCAGAACACACCTGTGTACTTCCCTG  850

seq1  GAGGGACTTTACC-TTCCTTGTCTCTATTCAGGGACAGTATGTGGCTCTT  899
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  GAGGGACTTTACCTTTCTTTGTCTCTATTCAGGGACAGTATGTGGCTCTT  900

seq1  GCCTGTAGCCGCCATGGCAGCCGTGTATTAGATGCCATCTGGAGTGGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCTGTAGCCGCCATGGCAGCCGTGTATTAGATGCCATCTGGAGT-GAGC  949

seq1  AGCTTTGGGGGCTCGGAAGGAAATTGCTGCTGAATTGGGTGAGTACCACT  999
      |||||||||||||| | |||||||||||||||||| ||||||||||||||
seq2  AGCTTTGGGGGCTCCG-AGGAAATTGCTGCTGAATGGGGTGAGTACCACT  998

seq1  GCCAATTGGGTGAGTGGTTTCTAGGCTCCTTCTGTACCCGGTAGCTGATT  1049
      ||||||||||||||| ||||||| ||| ||||||||||||||||||||| 
seq2  GCCAATTGGGTGAGT-GTTTCTA-GCT-CTTCTGTACCCGGTAGCTGAT-  1044

seq1  GGTTCAGCAGATTTCAAAAGTGCAG  1074
       | ||||||||||   |||||||||
seq2  -GGTCAGCAGATT--CAAAGTGCAG  1066