BAC Information

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BAC

Clone NameB6Ng01-107N19
Chromosome14 (Build37)
Map Location 4,798,936 - 4,873,462
singlet/doubletdoublet
Overlap geneLOC665981, LOC100041283, LOC100040996
Upstream geneLOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262
Downstream geneLOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107N19.bB6Ng01-107N19.g
ACCDH915204DH915205
length9201,157
definitionDH915204|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N19, 5' end.DH915205|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,798,936 - 4,799,853)(4,872,291 - 4,873,462)
sequence
gaattctcaaatattcctataccatgcctgcctggatactgccatgctcc
agccttgatgataatggactgaacctctgaacctgtaagccagccccaat
taaatgctctccctctgttgccttggtcaaggtgtctcttcatagaaatg
aaaccctaactaagacagtatgtctgactacatacatgtcttattgttgt
tttgagatagggccttacaagataggccagactatagtcaaatttaccat
cctcttgcctcagccttctgagcagtataattaaaatacccattgccagc
ttgtacaatgttttcaattaagaaaatgcctagacacttttcaaatgtct
caagtaaagcaatgcccattttagtatgcaaatactttagtgtatcatga
aatatttacaaaaagtatttcaaacaaggttaattacttaaactctggcc
ttttgttagtttggttttgagacagagtttgatgtagcccaggctggcct
gggactccctttgtaaatgaggatagtcttgaagcacttatcccctgcct
ctatgtcctgagcattagaattccaggtgagtgacactgcaccttgtttc
tatgcaatactgggaactaaatccagagcttcatgcatgctagcaaagca
gtctaccagtgagctgcctccccagcccaaactgttctgcactgttcact
gcctgccaaacaggggaatgaccccggggatcttcaatgggaactaaagt
gagtgggcttgttctaatgataatattcacattgcaagtatttcataact
atgcagtcattcatggaaagatatttgtgtgtgtgtgtgcgcaagcgcgt
gcacatcacaagcacatattcgatgaggtcatggtcagctgtcttctttt
cctcctcctccttcacctcc
gaattctgtaaccaaaggtgtgctctataatggctcaccaatggagatct
caaagtaacagtaataaaaaggaattcgtgagcagcaggggagaaatatt
tgaaaatctaaaacactaaagaaagtcaaggaactttttatgaaccaaat
gagacaatatgctatgtatttgaaattgtagtaggcattttgagaaatag
attttgatgcaggagacctgccataaattccaagtcagattgggcctgag
gtatgctaggggactccctcaaaacaaagaaacacactgaacaaagaaaa
gacaagtggatgtcccttaggtcagagaaccactgtgaaagctttgaact
aggagaagcagttagtaggtcagatactattttaaattggggattccttg
aaagtttctcagaagccatgatctttcaccagggttttcccctgagctgc
ctttagtgggaaatgaggcagctttcctttctttgcctacacagtatttc
cacccatcctgggtttcctctacagctgcagatgctgtagagttgcagtc
atttacttagcaggaaccagcttagactggctttgcttttcaaagttaca
ggccttaggagctggctactgaattctgtgttgatcagagcgggctgcaa
agctaggtttttataagtaagatacctgcactttaaggaattaattgcct
ggctcctggatgtgaagctgtgcaatgtgtctttaagcaatcagcatcct
ttgaaagagtaataaatggaacccgtattcttcaccaaataggcatgggc
cttagaccacctttcacttcagacacccttgactggattctgggacatgt
tgctatataaaacctgaaagtacggcttttgagatggctcaatggggaag
ggcactgactgttcttccaaaggtcctgagttcaaatcccagtaaccaca
tggtggctcaaagccatccctaacgagatctgacttctctctgatatgtc
tgagacagctacagtgtactacaataataaataataaatcttaaaaaaaa
ctggaagttatggtgtgggatgaaataaggatagctgcaaaggtgacttc
actattataggggtgggggaagagactagaatctaaatctcattttggat
cagcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4798936_4799853
seq2: B6Ng01-107N19.b_48_967

seq1  GAATTCTCAAATATTCCTATACCATGCCTGCCTGGATACTGCCATGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATATTCCTATACCATGCCTGCCTGGATACTGCCATGCTCC  50

seq1  AGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  100

seq1  TAAATGCTCTCCCTCTGTTGCCTTGGTCAAGGTGTCTCTTCATAGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTCTCCCTCTGTTGCCTTGGTCAAGGTGTCTCTTCATAGAAATG  150

seq1  AAACCCTAACTAAGACAGTATGTCTGACTACATACATGTCTTATTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTAACTAAGACAGTATGTCTGACTACATACATGTCTTATTGTTGT  200

seq1  TTTGAGATAGGGCCTTACAAGATAGGCCAGACTATAGTCAAATTTACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATAGGGCCTTACAAGATAGGCCAGACTATAGTCAAATTTACCAT  250

seq1  CCTCTTGCCTCAGCCTTCTGAGCAGTATAATTAAAATACCCATTGCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCCTCAGCCTTCTGAGCAGTATAATTAAAATACCCATTGCCAGC  300

seq1  TTGTACAATGTTTTCAATTAAGAAAATGCCTAGACACTTTTCAAATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAATGTTTTCAATTAAGAAAATGCCTAGACACTTTTCAAATGTCT  350

seq1  CAAGTAAAGCAATGCCCATTTTAGTATGCAAATACTTTAGTGTATCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAGCAATGCCCATTTTAGTATGCAAATACTTTAGTGTATCATGA  400

seq1  AATATTTACAAAAAGTATTTCAAACAAGGTTAATTACTTAAACTCTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACAAAAAGTATTTCAAACAAGGTTAATTACTTAAACTCTGGCC  450

seq1  TTTTGTTAGTTTGGTTTTGAGACAGAGTTTGATGTAGCCCAGGCTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAGTTTGGTTTTGAGACAGAGTTTGATGTAGCCCAGGCTGGCCT  500

seq1  GGGACTCCCTTTGTAAATGAGGATAGTCTTGAAGCACTTATCCCCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCCCTTTGTAAATGAGGATAGTCTTGAAGCACTTATCCCCTGCCT  550

seq1  CTATGTCCTGAGCATTAGAATTCCAGGTGAGTGACACTGCACCTTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCTGAGCATTAGAATTCCAGGTGAGTGACACTGCACCTTGTTTC  600

seq1  TATGCAATACTGGGAACTAAATCCAGAGCTTCATGCATGCTAGCAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATACTGGGAACTAAATCCAGAGCTTCATGCATGCTAGCAAAGCA  650

seq1  GTCTACCAGTGAGCTGCCTCCCCAGCCCAAACTGTTCTGCACTGTTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCAGTGAGCTGCCTCCCCAGCCCAAACTGTTCTGCACTGTTCACT  700

seq1  GCCTGCCAAACAGGGGAATGACCCCGGGGATCTTCAATGGGAACTAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAAACAGGGGAATGACCCCGGGGATCTTCAATGGGAACTAAAGT  750

seq1  GAGTGGGCTTGTTCTAATGATAATATTCACATTGCAAGTATTTCATAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGCTTGTTCTAATGATAATATTCACATTGCAAGTATTTCATAACT  800

seq1  ATGCAGTCATTCATGGAAAGATATTTGTGTGTGTGTGTGCGCAAGCGCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCATTCATGGAAAGATATTTGTGTGTGTGTGTGCGCAAGCGCGT  850

seq1  GCACATCACAAGCACATATTCGATGAGGTCATGGTCAGCTGTCTTCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  GCACATCACAAGCACATATTCGATGAGGTCATGGTCAGCTGTCTT-CTTT  899

seq1  TCCTCCTCCTCCT---CCTCC  918
      |||||||||||||   |||||
seq2  TCCTCCTCCTCCTTCACCTCC  920

seq1: chr14_4872291_4873462
seq2: B6Ng01-107N19.g_65_1221 (reverse)

seq1  CAAGCTGGGACCAAAATGTGATTATGATTCTAATGTTCTCTTCCCCACAC  50
      |||||| |  |||||||| ||||  |||||||    ||||||||||   |
seq2  CAAGCT-GATCCAAAATGAGATTTAGATTCTA---GTCTCTTCCCCCACC  46

seq1  TCTAT-ATAGTGAAAGGTCACTTTGGCAGCTATCCTGTATTTCAACCCAC  99
       |||| ||||||||  ||||| || ||||||||||| ||||||| |||||
seq2  CCTATAATAGTGAA--GTCACCTTTGCAGCTATCCT-TATTTCATCCCAC  93

seq1  ACATTAAACTTTCAGGTTTTTTTTTAAGATTTATTTATTTATTATATGTA  149
      ||  | ||||| |||  |||||||||||||||| ||||||||||| ||| 
seq2  ACCAT-AACTTCCAG--TTTTTTTTAAGATTTA-TTATTTATTAT-TGT-  137

seq1  AGTACACTGTAGCTGTCTTCAGACATATCAGAAGAGGAAGTCAGATCTCG  199
      ||||||||||||||||| ||||||||||||| ||| ||||||||||||||
seq2  AGTACACTGTAGCTGTC-TCAGACATATCAG-AGA-GAAGTCAGATCTCG  184

seq1  TTAGGGATGGCTTTGAGCCACCATGTGGTTACTGGGATTTGAACTCAGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATGGCTTTGAGCCACCATGTGGTTACTGGGATTTGAACTCAGGA  234

seq1  CCTTTGGAAGAACAGTCAGTGCCCTTCCCCATTGAGCCATCTCAAAAGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGAAGAACAGTCAGTGCCCTTCCCCATTGAGCCATCTCAAAAGCC  284

seq1  GTACTTTCAGGTTTTATATAGCAACATGTCCCAGAATCCAGTCAAGGGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTCAGGTTTTATATAGCAACATGTCCCAGAATCCAGTCAAGGGTG  334

seq1  TCTGAAGTGAAAGGTGGTCTAAGGCCCATGCCTATTTGGTGAAGAATACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTGAAAGGTGGTCTAAGGCCCATGCCTATTTGGTGAAGAATACG  384

seq1  GGTTCCATTTATTACTCTTTCAAAGGATGCTGATTGCTTAAAGACACATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCATTTATTACTCTTTCAAAGGATGCTGATTGCTTAAAGACACATT  434

seq1  GCACAGCTTCACATCCAGGAGCCAGGCAATTAATTCCTTAAAGTGCAGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTTCACATCCAGGAGCCAGGCAATTAATTCCTTAAAGTGCAGGT  484

seq1  ATCTTACTTATAAAAACCTAGCTTTGCAGCCCGCTCTGATCAACACAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTTATAAAAACCTAGCTTTGCAGCCCGCTCTGATCAACACAGAA  534

seq1  TTCAGTAGCCAGCTCCTAAGGCCTGTAACTTTGAAAAGCAAAGCCAGTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGCCAGCTCCTAAGGCCTGTAACTTTGAAAAGCAAAGCCAGTCT  584

seq1  AAGCTGGTTCCTGCTAAGTAAATGACTGCAACTCTACAGCATCTGCAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGTTCCTGCTAAGTAAATGACTGCAACTCTACAGCATCTGCAGCT  634

seq1  GTAGAGGAAACCCAGGATGGGTGGAAATACTGTGTAGGCAAAGAAAGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGAAACCCAGGATGGGTGGAAATACTGTGTAGGCAAAGAAAGGAA  684

seq1  AGCTGCCTCATTTCCCACTAAAGGCAGCTCAGGGGAAAACCCTGGTGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTCATTTCCCACTAAAGGCAGCTCAGGGGAAAACCCTGGTGAAA  734

seq1  GATCATGGCTTCTGAGAAACTTTCAAGGAATCCCCAATTTAAAATAGTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGCTTCTGAGAAACTTTCAAGGAATCCCCAATTTAAAATAGTAT  784

seq1  CTGACCTACTAACTGCTTCTCCTAGTTCAAAGCTTTCACAGTGGTTCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTACTAACTGCTTCTCCTAGTTCAAAGCTTTCACAGTGGTTCTCT  834

seq1  GACCTAAGGGACATCCACTTGTCTTTTCTTTGTTCAGTGTGTTTCTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAGGGACATCCACTTGTCTTTTCTTTGTTCAGTGTGTTTCTTTGT  884

seq1  TTTGAGGGAGTCCCCTAGCATACCTCAGGCCCAATCTGACTTGGAATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGAGTCCCCTAGCATACCTCAGGCCCAATCTGACTTGGAATTTA  934

seq1  TGGCAGGTCTCCTGCATCAAAATCTATTTCTCAAAATGCCTACTACAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTCTCCTGCATCAAAATCTATTTCTCAAAATGCCTACTACAATT  984

seq1  TCAAATACATAGCATATTGTCTCATTTGGTTCATAAAAAGTTCCTTGACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACATAGCATATTGTCTCATTTGGTTCATAAAAAGTTCCTTGACT  1034

seq1  TTCTTTAGTGTTTTAGATTTTCAAATATTTCTCCCCTGCTGCTCACGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGTGTTTTAGATTTTCAAATATTTCTCCCCTGCTGCTCACGAAT  1084

seq1  TCCTTTTTATTACTGTTACTTTGAGATCTCCATTGGTGAGCCATTATAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTATTACTGTTACTTTGAGATCTCCATTGGTGAGCCATTATAGA  1134

seq1  GCACACCTTTGGTTACAGAATTC  1172
      |||||||||||||||||||||||
seq2  GCACACCTTTGGTTACAGAATTC  1157