BAC Information

Click to search

BAC

Clone NameB6Ng01-108K09
Chromosome16 (Build37)14 (Build37)
Map Location 30,550,839 - 30,551,80298,492,274 - 98,492,791
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOpa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44
Downstream geneLsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108K09.bB6Ng01-108K09.g
ACCDH915780DH915781
length952368
definitionDH915780|Mus musculus domesticus DNA, BAC clone: B6Ng01-108K09, 5' end.DH915781|Mus musculus domesticus DNA, BAC clone: B6Ng01-108K09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,550,839 - 30,551,802)(98,492,274 - 98,492,791)
sequence
gaattccagtccgtgacggcagaggggatgtagtagatatggctacaccg
tcatgcactgacagctgcacatatgtgcctatgtgtgtctgtgtgtgtgc
atgcctgtgtgtgtttgtatgtgtgcattcaagtgtggagttcagacaat
atgtgtggtcagttatttcctctcttccattagatggaagattagattga
acccaggtcttcaggcttggcagcaaacactttcgcccctcgtgatacta
ccaagttggtggttatgtttctcccttacacacccaccctacccctcccc
accccaccccaccccactccacccccgagtagccagggtttctctgtgta
gccttggccgtcctagaactcactctgtagaccaggctggccttgaacct
agagatcctcttgcctctgcctcccagtgccaggattaaaagtgtgcacc
accactcctggctttgtggctaagtttaaatatatggaattggagtgcgt
gtgatcatttagaccacagcgttttctttgcagtagacatcaaggtggat
ggctgttgcacagtcccagtacctgggaggctgaagcgggaagagtcttt
gagttggcggcccaccagggctacacagtgaactccaggttagcctggac
cacgtggcaaaaccctgcctcaaaagtaaataaacagtgaagccaccgtc
aagctgtgctctaagcaaacttactgaaatcgaagacaatttgaaaatat
tctaatggtttcctttagcgaaaaaccatccatgtacctgaattgtgcgg
caccgtggttggatgggagcggcacatttcaagtttaaccctttctggcc
ggggtggcgcaaggcgtgccttgatagcttcatagagggaagagagcaga
gcgatgtgtacccatcgtccccctccctaccttttgtgctgcatctttca
ac
tccagagtaacagaacctatggggggctgggcggtggtggcacaatcctt
taataccagcgattgggaggcagaggcagaggcaggtagatttctgagtt
ctgagttcgaggccagcagcctggtctacagagtgagttccagggcagcc
acagctacacagagaaaccctgtctctgtatatacacacacacatatgta
aagagaaaaggaacttttctctgttattagaatgacttacagactgagtg
gtccagctagtccaacaatggctgtctacaacagaaggtccaagaatcca
gcagctgttcagtccatgcagctggatgcctcagctgctcttcagtatgt
gctttttttttttatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30550839_30551802
seq2: B6Ng01-108K09.b_48_999 (reverse)

seq1  GTTGAAAAGATGCAGCACAAAAGTGTGGGGTGGGGGACGGATGGGGTACA  50
      |||| |||||||||||||||||| || ||| ||||||| ||| |||||||
seq2  GTTG-AAAGATGCAGCACAAAAG-GTAGGGAGGGGGAC-GAT-GGGTACA  46

seq1  CATCGCCTCTGCTTCCTCCTTCCCCTCTGCTGAAGCTGTCAAGGGCACGC  100
      ||||| |||||||  |||  | ||||||  ||||||| |||| |||||||
seq2  CATCG-CTCTGCT--CTC--TTCCCTCT-ATGAAGCTATCAA-GGCACGC  89

seq1  CTTGCGCCACCCCGGCCAGAAAGGGGTTAAACTTGAAATGTGCCGCTCCC  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTGCGCCACCCCGGCCAGAAA-GGGTTAAACTTGAAATGTGCCGCTCCC  138

seq1  ATCCAACCACGGTGCCGCACAATTCAGGTACATGGATGGTTTTTCGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACCACGGTGCCGCACAATTCAGGTACATGGATGGTTTTTCGCTAA  188

seq1  AGGAAACCATTAGAATATTTTCAAATTGTCTTCGATTTCAGTAAGTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCATTAGAATATTTTCAAATTGTCTTCGATTTCAGTAAGTTTGC  238

seq1  TTAGAGCACAGCTTGACGGTGGCTTCACTGTTTATTTACTTTTGAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCACAGCTTGACGGTGGCTTCACTGTTTATTTACTTTTGAGGCAG  288

seq1  GGTTTTGCCACGTGGTCCAGGCTAACCTGGAGTTCACTGTGTAGCCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGCCACGTGGTCCAGGCTAACCTGGAGTTCACTGTGTAGCCCTGG  338

seq1  TGGGCCGCCAACTCAAAGACTCTTCCCGCTTCAGCCTCCCAGGTACTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCGCCAACTCAAAGACTCTTCCCGCTTCAGCCTCCCAGGTACTGGG  388

seq1  ACTGTGCAACAGCCATCCACCTTGATGTCTACTGCAAAGAAAACGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAACAGCCATCCACCTTGATGTCTACTGCAAAGAAAACGCTGTG  438

seq1  GTCTAAATGATCACACGCACTCCAATTCCATATATTTAAACTTAGCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAATGATCACACGCACTCCAATTCCATATATTTAAACTTAGCCACA  488

seq1  AAGCCAGGAGTGGTGGTGCACACTTTTAATCCTGGCACTGGGAGGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGAGTGGTGGTGCACACTTTTAATCCTGGCACTGGGAGGCAGAG  538

seq1  GCAAGAGGATCTCTAGGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGATCTCTAGGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCT  588

seq1  AGGACGGCCAAGGCTACACAGAGAAACCCTGGCTACTCGGGGGTGGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGGCCAAGGCTACACAGAGAAACCCTGGCTACTCGGGGGTGGAGTG  638

seq1  GGGTGGGGTGGGGTGGGGAGGGGTAGGGTGGGTGTGTAAGGGAGAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGTGGGGTGGGGAGGGGTAGGGTGGGTGTGTAAGGGAGAAACAT  688

seq1  AACCACCAACTTGGTAGTATCACGAGGGGCGAAAGTGTTTGCTGCCAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAACTTGGTAGTATCACGAGGGGCGAAAGTGTTTGCTGCCAAGC  738

seq1  CTGAAGACCTGGGTTCAATCTAATCTTCCATCTAATGGAAGAGAGGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACCTGGGTTCAATCTAATCTTCCATCTAATGGAAGAGAGGAAAT  788

seq1  AACTGACCACACATATTGTCTGAACTCCACACTTGAATGCACACATACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACCACACATATTGTCTGAACTCCACACTTGAATGCACACATACAA  838

seq1  ACACACACAGGCATGCACACACACAGACACACATAGGCACATATGTGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGGCATGCACACACACAGACACACATAGGCACATATGTGCAG  888

seq1  CTGTCAGTGCATGACGGTGTAGCCATATCTACTACATCCCCTCTGCCGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTGCATGACGGTGTAGCCATATCTACTACATCCCCTCTGCCGTC  938

seq1  ACGGACTGGAATTC  964
      ||||||||||||||
seq2  ACGGACTGGAATTC  952

seq1: chr14_98492274_98492791
seq2: B6Ng01-108K09.g_156_441 (reverse)

seq1  AAAATAAAAAAAAAAGCAACTGATGATCTAGGAACACAATACTACAGTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCTTCTACTTTTCAATTTAAATAATTGTAAATTACAAAAATTCTGAACCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTAAGTTCCTATCCTAAAGTTTACTCTATGTATAATATATATAATAGCAA  150
                                       || ||| | || |  | 
seq2  ---------------------------------AAAATAAAAAAAAAAAG  17

seq1  TATATATTGCTAAAAGTTATTTGAAATCTTGACGTGTTTCTTCATGTGAT  200
       | ||| ||  || ||  |  |||      | | |    || |||| || 
seq2  CACATACTG--AAGAG-CAGCTGA------GGCATCCAGCTGCATG-GAC  57

seq1  TGGACTTTATTCTATTTTTTACTAACTAGATAGAAAAAAAGTCATATAAG  250
      || ||                  | || | | ||                
seq2  TGAAC------------------AGCT-GCTGGA----------------  72

seq1  CCTGTCCTTCTTGTTGGTTAGTTAACCATTTAGTGAAGAAAAGGCAAATC  300
             ||||||           ||| | |  || ||| |         
seq2  -------TTCTTG----------GACCTTCTGTTGTAGACA--------G  97

seq1  CCATTATTAGAAAATGT-AATCACTCTGTTTATAACAAACAAAAATAAAT  349
      ||||| || ||  |  |  | ||||| || | |||               
seq2  CCATTGTTGGACTAGCTGGACCACTCAGTCTGTAA---------------  132

seq1  CCATGTTTTTAAAACATGCACTAATATAAAATCAGTTTCAACTCTTTTTT  399
          ||  ||  ||       ||| | | ||  |||| |        |||
seq2  ----GTCATTCTAA-------TAACAGAGAA-AAGTTCC--------TTT  162

seq1  TCGTTGTTGTTTATTTGTTTGTTTTTTTGTTTTTCGAGACAGGGTTTCTC  449
      ||     | ||||  | | ||| | | | | |   |||||||||||||||
seq2  TC-----TCTTTACATATGTGTGTGTGTATATACAGAGACAGGGTTTCTC  207

seq1  TGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAG---GCTGTC  496
      ||||||||  |||||| ||||||||||||| ||||||||||   |||| |
seq2  TGTGTAGCTGTGGCTGCCCTGGAACTCACTCTGTAGACCAGGCTGCTGGC  257

seq1  CT-------GGAACTCAGAAATCCACCTG  518
      ||        ||||||||||||| |||||
seq2  CTCGAACTCAGAACTCAGAAATCTACCTG  286