BAC Information

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BAC

Clone NameB6Ng01-108O22
Chromosome14 (Build37)
Map Location 84,106,151 - 84,204,136
singlet/doubletdoublet
Overlap geneLOC100043279
Upstream geneLOC100043773
Downstream geneLOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108O22.bB6Ng01-108O22.g
ACCDH915985DH915986
length1,1681,210
definitionDH915985|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O22, 5' end.DH915986|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,106,151 - 84,107,328)(84,202,917 - 84,204,136)
sequence
gaattcctgcactgttttcaataggtttgatatttttctttaaaggctaa
ataaattagaatcttaagttataaaaatgttgctattctcacatatgtag
ttatgtaggtttgaaactctgtatgtggttatgtgtttatataggcccaa
atataataggaattaatctgtgtgtaggactggaaattatttcatgttat
tagcaaaaattatacagcgaacacaatatacatttaaaaatttaaatata
ttagcatcctgtttgtagtacgtgatttcaagatagacatagtaatttca
tgtaacagattttcaatttccatttctccatgtttttcttatattcaagc
accatttcagaaaatatctgttgattgcctaatgattgtagagaatggga
cagttacagagtaggtaacatccagtctctttcctctacttctataaatt
cactttatttcctcacataagatgcaagcctaacacatacattgaaaaaa
aaggaaccaagtatgaaaagtaataagtgatttacatatagtaactaaat
accaaatgattaataaatatgtatagaaagggcttcaagtaaagacagga
aaatgctcctagaaatttagaaaactctggcctctgaaacaaggtaaagc
atatcaatatattttctacacagtgcgtgttagacactaactgggaaaac
taagaaagagagttaatattctctaaatgacatgtcataactttatttaa
aatgtataattatatattagctatgagtaaattatttacattcatcagta
atctggattccataatccatcccctgaaaaaaattctgaatattaaacaa
acagacattttcaacatcaaaattaatacaaaataaaggtttactgggtg
tgaaacttagaatccaaagcttcatgagttcaatttttgctgttttagat
tcactgcctaaggacagacaggataatatgcagaaagcaagttcagagat
ggaataaggtagagacaaagaagactttcaacatgaactgtatagtactt
tggaactttcagaatatggatagaaggtgactgacttcagggtcataaaa
gcctcctaggtcggattctagaccgaaatgaattccactttatagagttc
aagaccgactgaatggac
gaattcattcattccaggaaggatcatttacagtggttgcccaatgagca
gtggtcagccctgaaacactacacacaaataacaaaaactggctcagcag
ggttgtttacatatttgagcagatacacatatatgtaacaataataaaga
aaaagagtctaccaattagagaatgaggtaatggcaaggattggtggaag
gatacccagagaagtagagagaggttcctcaaggggctggattaggaaag
ggagaaggaaagtgaagtaaatctggttgaaataaaaaacaaatttttaa
atgaataaataaaggaaaaaaactttcttttggtaaatagctataatttc
atcagagacaatattaattaaattaaaataaacagatttttgtgttccat
ctttaaaataacttaagtcccacataatccctttctgtcttttaatatgt
ttactattatagttctatctagatttagttgacaaaatatcctgtgttca
attttatctatatccttaagtagtcaaggaaagaatcataagtgccagta
atcagtaatttgcattcagccatcagtgaaaaaactttcccccaatgtct
cagcaataggtggaaatgggttttcctcaggatggaacttgactatttca
ctatgccaattgttggagcctgaatgtgcgaagttacagccatgcaggga
gaggctgtttttagggtattaggagacacattgtcaagagcatcagcaga
agcagactgcactgcagctgttctcttgcattatataagagatccatatt
ttaactcttagctgtcataagcaattaacaagaaacggaaaaaaaaacac
ttcacattctcataaataacaggaacttcacacgcattgacatatgcaac
tacagagttcaattttcttttcaaaatatccaaaacttcactccatctca
ggagtattttttttaaagattgtttacagtttactgtttttattttctga
atatggtatcacagttatgaaatatactagatttattccacttatttatc
tggatatgcatatttgcattttatttggcattttaggttatgcttgcttc
tatcatgataaaggactgaagatgaatggagtgtttagaataaatggcat
attggagattattgccttggataagagatcctgcgagctcctgcctaggg
tgtttctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84106151_84107328
seq2: B6Ng01-108O22.b_46_1213

seq1  GAATTCCTGCACTGTTTTCAATAGGTTTGATATTTTTCTTTAAAGGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCACTGTTTTCAATAGGTTTGATATTTTTCTTTAAAGGCTAA  50

seq1  ATAAATTAGAATCTTAAGTTATAAAAATGTTGCTATTCTCACATATGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAGAATCTTAAGTTATAAAAATGTTGCTATTCTCACATATGTAG  100

seq1  TTATGTAGGTTTGAAACTCTGTATGTGGTTATGTGTTTATATAGGCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGGTTTGAAACTCTGTATGTGGTTATGTGTTTATATAGGCCCAA  150

seq1  ATATAATAGGAATTAATCTGTGTGTAGGACTGGAAATTATTTCATGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAGGAATTAATCTGTGTGTAGGACTGGAAATTATTTCATGTTAT  200

seq1  TAGCAAAAATTATACAGCGAACACAATATACATTTAAAAATTTAAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAATTATACAGCGAACACAATATACATTTAAAAATTTAAATATA  250

seq1  TTAGCATCCTGTTTGTAGTACGTGATTTCAAGATAGACATAGTAATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCCTGTTTGTAGTACGTGATTTCAAGATAGACATAGTAATTTCA  300

seq1  TGTAACAGATTTTCAATTTCCATTTCTCCATGTTTTTCTTATATTCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGATTTTCAATTTCCATTTCTCCATGTTTTTCTTATATTCAAGC  350

seq1  ACCATTTCAGAAAATATCTGTTGATTGCCTAATGATTGTAGAGAATGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCAGAAAATATCTGTTGATTGCCTAATGATTGTAGAGAATGGGA  400

seq1  CAGTTACAGAGTAGGTAACATCCAGTCTCTTTCCTCTACTTCTATAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACAGAGTAGGTAACATCCAGTCTCTTTCCTCTACTTCTATAAATT  450

seq1  CACTTTATTTCCTCACATAAGATGCAAGCCTAACACATACATTGAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATTTCCTCACATAAGATGCAAGCCTAACACATACATTGAAAAAA  500

seq1  AAGGAACCAAGTATGAAAAGTAATAAGTGATTTACATATAGTAACTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCAAGTATGAAAAGTAATAAGTGATTTACATATAGTAACTAAAT  550

seq1  ACCAAATGATTAATAAATATGTATAGAAAGGGCTTCAAGTAAAGACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGATTAATAAATATGTATAGAAAGGGCTTCAAGTAAAGACAGGA  600

seq1  AAATGCTCCTAGAAATTTAGAAAACTCTGGCCTCTGAAACAAGGTAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCCTAGAAATTTAGAAAACTCTGGCCTCTGAAACAAGGTAAAGC  650

seq1  ATATCAATATATTTTCTACACAGTGCGTGTTAGACACTAACTGGGAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATATATTTTCTACACAGTGCGTGTTAGACACTAACTGGGAAAAC  700

seq1  TAAGAAAGAGAGTTAATATTCTCTAAATGACATGTCATAACTTTATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGAGAGTTAATATTCTCTAAATGACATGTCATAACTTTATTTAA  750

seq1  AATGTATAATTATATATTAGCTATGAGTAAATTATTTACATTCATCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATAATTATATATTAGCTATGAGTAAATTATTTACATTCATCAGTA  800

seq1  ATCTGGATTCCATAATCCATCCCCTGAAAAAAATTCTGAATATTAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGATTCCATAATCCATCCCCTGAAAAAAATTCTGAATATTAAACAA  850

seq1  ACAGACATTTTCAACATCAAAATTAATACAAAATAAAGGTTTACT-GGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACAGACATTTTCAACATCAAAATTAATACAAAATAAAGGTTTACTGGGTG  900

seq1  TGAAACTTAGAATCCAAAGCTTCATGAGTTCAATTTTTGCTGTTTTAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTAGAATCCAAAGCTTCATGAGTTCAATTTTTGCTGTTTTAGAT  950

seq1  TCACTG-CTTAGGACAGACAGGATAATTATGCAGAAAGCAAGTTCAAGAG  998
      |||||| || |||||||||||||||| |||||||||||||||||| ||||
seq2  TCACTGCCTAAGGACAGACAGGATAA-TATGCAGAAAGCAAGTTC-AGAG  998

seq1  AATGGGAATAAAGGTAGAGACAAAG-AGACTTTCAACAATGAACTGTATA  1047
      |   ||||| ||||||||||||||| ||||||||||| ||||||||||||
seq2  A--TGGAAT-AAGGTAGAGACAAAGAAGACTTTCAAC-ATGAACTGTATA  1044

seq1  GTACTTTTGGAAC-TTCAGAATATGAATAG-AGGTGACTGACTTCAGGTC  1095
      |||| |||||||| ||||||||||| |||| |||||||||||||||||  
seq2  GTAC-TTTGGAACTTTCAGAATATGGATAGAAGGTGACTGACTTCAGGGT  1093

seq1  AATTAAAGGCTCCTAGGGTCAGATCTAAGACAGGAAATTAGATTCACATT  1145
       || |||| |||||| |||| |||   ||||  ||||| | ||||   ||
seq2  CATAAAAGCCTCCTA-GGTCGGATTCTAGAC-CGAAATGA-ATTCCACTT  1140

seq1  TATAAGAGTTCAAAGAACAGAAACTGAATGGAC  1178
      ||| ||||||| |||| |    |||||||||||
seq2  TAT-AGAGTTC-AAGACC---GACTGAATGGAC  1168

seq1: chr14_84202917_84204136
seq2: B6Ng01-108O22.g_67_1276 (reverse)

seq1  CAGAGAAACACCTTA-GCAGGGGACTGCCAGATACTCTCTTATTCCCACT  49
      |||||||||||| || ||||| |   ||  ||   ||||||||  |||  
seq2  CAGAGAAACACCCTAGGCAGGAGCTCGCAGGA---TCTCTTAT--CCA--  43

seq1  GGTGCATTATATCTTCCATATTGCATTTTATTTCATAACACTCCA-TCAT  98
         ||| || |||| | ||||  |||||   |||  ||||||||| ||||
seq2  -AGGCAATA-ATCTCCAATATGCCATTT--ATTCTAAACACTCCATTCAT  89

seq1  GCTTCAGTTCTTTATCAATGATAGAAGCAAAAGCAT-ACCTAAAATGCCA  147
       ||||||| ||||||| |||||||||||  |||||| |||||||||||||
seq2  -CTTCAGTCCTTTATC-ATGATAGAAGC--AAGCATAACCTAAAATGCCA  135

seq1  AAT-AAATGCAAATATGCATTTTTCCAGATAAAT-AGT-GAAT-AATCTA  193
      ||| |||||||||||||||  | ||||||||||| ||| |||| ||||||
seq2  AATAAAATGCAAATATGCA--TATCCAGATAAATAAGTGGAATAAATCTA  183

seq1  GTATATTTCATAACTGTGATAACATATCAAGAAAATAAAAACAGTAAACT  243
      ||||||||||||||||||||| |||||  |||||||||||||||||||||
seq2  GTATATTTCATAACTGTGATACCATATTCAGAAAATAAAAACAGTAAACT  233

seq1  GTAAACAATCTTT-AAAAAAATACTCCCTGAGGTGGAGTGAAGTTTTGGA  292
      ||||||||||||| ||||||||||| |||||| |||||||||||||||||
seq2  GTAAACAATCTTTAAAAAAAATACT-CCTGAGATGGAGTGAAGTTTTGGA  282

seq1  TATTTTGAAAAGAAAATTGAACTCTGTAGTTGCATATGTCAATGCGTGTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAAAAGAAAATTGAACTCTGTAGTTGCATATGTCAATGCGTGTG  332

seq1  AAGTTCCTGTTATTTATGAGAATGTGAAGTGTTTTTTTTTCCGTTTCTTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTGTTATTTATGAGAATGTGAAGTGTTTTTTTTTCCGTTTCTTG  382

seq1  TTAATTGCTTATGACAGCTAAGAGTTAAAATATGGATCTCTTATATAATG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCTTATGACAGCTAAGAGTTAAAATATGGATCTCTTATATAATG  432

seq1  CAAGAGAACAGCTGCAGTGCAGTCTGCTTCTGCTGATGCTCTTGACAATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAACAGCTGCAGTGCAGTCTGCTTCTGCTGATGCTCTTGACAATG  482

seq1  TGTCTCCTAATACCCTAAAAACAGCCTCTCCCTGCATGGCTGTAACTTCG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTAATACCCTAAAAACAGCCTCTCCCTGCATGGCTGTAACTTCG  532

seq1  CACATTCAGGCTCCAACAATTGGCATAGTGAAATAGTCAAGTTCCATCCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCAGGCTCCAACAATTGGCATAGTGAAATAGTCAAGTTCCATCCT  582

seq1  GAGGAAAACCCATTTCCACCTATTGCTGAGACATTGGGGGAAAGTTTTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAACCCATTTCCACCTATTGCTGAGACATTGGGGGAAAGTTTTTT  632

seq1  CACTGATGGCTGAATGCAAATTACTGATTACTGGCACTTATGATTCTTTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATGGCTGAATGCAAATTACTGATTACTGGCACTTATGATTCTTTC  682

seq1  CTTGACTACTTAAGGATATAGATAAAATTGAACACAGGATATTTTGTCAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTACTTAAGGATATAGATAAAATTGAACACAGGATATTTTGTCAA  732

seq1  CTAAATCTAGATAGAACTATAATAGTAAACATATTAAAAGACAGAAAGGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTAGATAGAACTATAATAGTAAACATATTAAAAGACAGAAAGGG  782

seq1  ATTATGTGGGACTTAAGTTATTTTAAAGATGGAACACAAAAATCTGTTTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGGGACTTAAGTTATTTTAAAGATGGAACACAAAAATCTGTTTA  832

seq1  TTTTAATTTAATTAATATTGTCTCTGATGAAATTATAGCTATTTACCAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTAATTAATATTGTCTCTGATGAAATTATAGCTATTTACCAAA  882

seq1  AGAAAGTTTTTTTCCTTTATTTATTCATTTAAAAATTTGTTTTTTATTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTTTTTTCCTTTATTTATTCATTTAAAAATTTGTTTTTTATTTC  932

seq1  AACCAGATTTACTTCACTTTCCTTCTCCCTTTCCTAATCCAGCCCCTTGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATTTACTTCACTTTCCTTCTCCCTTTCCTAATCCAGCCCCTTGA  982

seq1  GGAACCTCTCTCTACTTCTCTGGGTATCCTTCCACCAATCCTTGCCATTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTCTCTCTACTTCTCTGGGTATCCTTCCACCAATCCTTGCCATTA  1032

seq1  CCTCATTCTCTAATTGGTAGACTCTTTTTCTTTATTATTGTTACATATAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCTCTAATTGGTAGACTCTTTTTCTTTATTATTGTTACATATAT  1082

seq1  GTGTATCTGCTCAAATATGTAAACAACCCTGCTGAGCCAGTTTTTGTTAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTGCTCAAATATGTAAACAACCCTGCTGAGCCAGTTTTTGTTAT  1132

seq1  TTGTGTGTAGTGTTTCAGGGCTGACCACTGCTCATTGGGCAACCACTGTA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTAGTGTTTCAGGGCTGACCACTGCTCATTGGGCAACCACTGTA  1182

seq1  AATGATCCTTCCTGGAATGAATGAATTC  1220
      ||||||||||||||||||||||||||||
seq2  AATGATCCTTCCTGGAATGAATGAATTC  1210