BAC Information

Click to search

BAC

Clone NameB6Ng01-110J19
Chromosome14 (Build37)
Map Location 112,968,078 - 112,969,225
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110J19.bB6Ng01-110J19.g
ACCDH917185DH917186
length1,2041,114
definitionDH917185|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J19, 5' end.DH917186|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccatgacatttatcatgaaggggtgttgcattttg
tcaagtgctttctcagcatctaatgagatgatcatgtggtttttgtcttt
gaatttgtttatatagtggattacattgatgaatttctgtatattaaacc
atccctgcaaccctgagatgaagcatacttggtaatgatggatgatcatt
ttgatgtgttcttggattcgggttgggaggattttattgagtatttttgc
atggattttcataagggaaattgatctgaagatctctttctttgttggat
ctttgtgtggtttaggtataagagtaattgtggattcatagaatgaactg
ggtagagtaccttctgtttctattttgtggaatagtttgagaagagttgg
gattaggtcttctttaaaggtctgatagaactctgccctaaacccatcta
gttctgggctatttttggttgggagactattgatgactgcttctatttct
ttaggggaaatgggactgtttagatcttactctgatcctgatttaacttt
ggtacccagtatctgtctaggaagttgtccatttcatccaggttttctag
ttttgttgagtatagccttttgtaataagatctgatgatgttttggattt
cctcaggttctgttggtatgtctcctttttcatttttcattttgttaatt
aggatactgtccctatgccctctagttagtctgggctaaaggttcgtcta
ttttgttgattttcccaaagaaccagctcccagtttgggttgattctttg
aatagttctttttgtttacacttgggttgatttcagccctgagtttgaat
atttcctgctgtctactcctcatggggtggattttggttcctttagttct
agagctcctaggtgtgctgtccaggctgctagtgtatacctctttcaagt
tcctttttctaggcaccttagggctaatgagtttcctctaaggcctgcct
catgtgtcccataagttgggtatggtgtggcttcatttcataactcataa
aagtcttttaattccttctttatatcatcttgacacaaggaatcattgag
atagaggttgtgtcaagattccacagtaaaagaggccttcctatatatgt
gtcagtattggaaaccagaccggcccgtgggtatcagaatgaagaagacg
taca
gaattcatatggcctccaaataatgtttaatcttaaaatggcatcttgta
aggacatactgctttattttactggtcaactagaagaagatttaaacttg
tgtcaaaataagctcaattgtttcttgagaattgagattttcagtaactt
tgcttcagatttacaggaaggatttatttttttctggaattttttggagg
gtggagcattagaaggtgacattttttatatatttacccaaaatccaagt
ctgacacaaacgatttcttatctgctctcttagttttaagatgtatcagc
aattagaaaaatttagagtgaatgctttataatatgggcatttcaaactg
ctaaaacatggcatatcaaaaagctaagttgtctatatctggtgagatcc
tactccctttttatgattgatgtcattgagttgtgttcaaattttggtga
aaagcccaagacaataaatcttttataagagaactaatattatatgaaaa
tgttccacattgtgccctagccaaccttgaaatgcccagccccttaatac
tgttacatttatgactagctttgatatcttcaattttgattggatataat
atgcaaatcccatgaattgtcattcctcccattactagtgctccctccta
ttcttgtagataatatgacagggtaaatagtagcagttttgctcttagtt
atttgaacagtggatctgattcaacttctgttaaaatgatgctaataact
atcttgccatctctactactcttctttccttattccagaatcttcctctc
atcctttcatgtgttttcattttagacagcatctctggttatgttacatt
ctggcatagtagatctgttttcttttctctcaattgattattatttaaag
ttattttttagatgttacattatggttttcaagtttatcattgatactag
acataatttaagagcaatgattttcataatatcactatgcccaggactga
atgcatctctcatttgatacagggttgtctttgtagatcactatctcagt
gaatgaatatcaggggtgatgcctgttactaatgtgtggaagactcagct
taattggcagaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112968078_112969225
seq2: B6Ng01-110J19.g_69_1182

seq1  GAATTCATATGGCCTCCAAATAATGTTTAATCTTAAAATGGCATCTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGGCCTCCAAATAATGTTTAATCTTAAAATGGCATCTTGTA  50

seq1  AGGACATACTGCTTTATTTTACTGGTCAACTAGAAGAAGATTTAAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATACTGCTTTATTTTACTGGTCAACTAGAAGAAGATTTAAACTTG  100

seq1  TGTCAAAATAAGCTCAATTGTTTCTTGAGAATTGAGATTTTCAGTAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAATAAGCTCAATTGTTTCTTGAGAATTGAGATTTTCAGTAACTT  150

seq1  TGCTTCAGATTTACAGGAAGGATTTATTTTTTTCTGGAATTTTTTGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGATTTACAGGAAGGATTTATTTTTTTCTGGAATTTTTTGGAGG  200

seq1  GTGGAGCATTAGAAGGTGACATTTTTTATATATTTACCCAAAATCCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCATTAGAAGGTGACATTTTTTATATATTTACCCAAAATCCAAGT  250

seq1  CTGACACAAACGATTTCTTATCTGCTCTCTTAGTTTTAAGATGTATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACAAACGATTTCTTATCTGCTCTCTTAGTTTTAAGATGTATCAGC  300

seq1  AATTAGAAAAATTTAGAGTGAATGCTTTATAATATGGGCATTTCAAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAAAATTTAGAGTGAATGCTTTATAATATGGGCATTTCAAACTG  350

seq1  CTAAAACATGGCATATCAAAAAGCTAAGTTGTCTATATCTGGTGAGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACATGGCATATCAAAAAGCTAAGTTGTCTATATCTGGTGAGATCC  400

seq1  TACTCCCTTTTTATGATTGATGTCATTGAGTTGTGTTCAAATTTTGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCTTTTTATGATTGATGTCATTGAGTTGTGTTCAAATTTTGGTGA  450

seq1  AAAGCCCAAGACAATAAATCTTTTATAAGAGAACTAATATTATATGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAAGACAATAAATCTTTTATAAGAGAACTAATATTATATGAAAA  500

seq1  TGTTCCACATTGTGCCCTAGCCAACCTTGAAATGCCCAGCCCCTTAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACATTGTGCCCTAGCCAACCTTGAAATGCCCAGCCCCTTAATAC  550

seq1  TGTTACATTTATGACTAGCTTTGATATCTTCAATTTTGATTGGATATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATTTATGACTAGCTTTGATATCTTCAATTTTGATTGGATATAAT  600

seq1  ATGCAAATCCCATGAATTGTCATTCCTCCCATTACTAGTGCTCCCTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATCCCATGAATTGTCATTCCTCCCATTACTAGTGCTCCCTCCTA  650

seq1  TTCTTGTAGATAATATGACAGGGTAAATAGTAGCAGTTTTGCTCTTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTAGATAATATGACAGGGTAAATAGTAGCAGTTTTGCTCTTAGTT  700

seq1  ATTTGAACAGTGGATCTGATTCAACTTCTGTTAAAATGATGCTAATAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACAGTGGATCTGATTCAACTTCTGTTAAAATGATGCTAATAACT  750

seq1  ATCTTGCCATCTCTACTACTCTTCTTTCCTTATTCCAGAATCTTCCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCATCTCTACTACTCTTCTTTCCTTATTCCAGAATCTTCCTCTC  800

seq1  ATCCTTTCATGTGTTTTCATTTTAGACAAGCATCTCTGGTTATGTTACAT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCCTTTCATGTGTTTTCATTTTAGAC-AGCATCTCTGGTTATGTTACAT  849

seq1  TCTGGCATAGTAGATCTGTTTTCTTTTCCTCTCAATTGATTATTATTTTA  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||  
seq2  TCTGGCATAGTAGATCTGTTTTCTTTT-CTCTCAATTGATTATTATTT--  896

seq1  AAAGTTATTTTTTAGATGTTACATTATTGGTTTTCAAAGTTTTATCATTG  950
      |||||||||||||||||||||||||| ||||||||||   ||||||||||
seq2  AAAGTTATTTTTTAGATGTTACATTA-TGGTTTTCAA--GTTTATCATTG  943

seq1  ATTACTAGACATAATTTTAAAGAGCAATTGATTTTTCAATAAATATCACT  1000
      | |||||||||||||||  |||||||| ||| ||||||   |||||||||
seq2  A-TACTAGACATAATTT--AAGAGCAA-TGA-TTTTCA--TAATATCACT  986

seq1  ATTGCCCAGGACTGAATTGCATCTCTCATTTGATACAAGTGTTGTCTTTG  1050
      | |||||||||||||| ||||||||||||||||||| || ||||||||||
seq2  A-TGCCCAGGACTGAA-TGCATCTCTCATTTGATAC-AGGGTTGTCTTTG  1033

seq1  TAGATCACTATCCTCAGTGAGAATGAGTATATCAGTGGTGGATTGTCTTG  1100
      ||||||||||| ||||||  ||||||  ||||||| ||||   || ||  
seq2  TAGATCACTAT-CTCAGT--GAATGA--ATATCAGGGGTG--ATGCCT--  1074

seq1  TTTACATTAAATGATGTGAGAAGACTCAGCCTAAAATTGGGCAGAACA  1148
       ||||    |||| |||| ||||||||||| |||   | |||||||||
seq2  GTTAC---TAATG-TGTG-GAAGACTCAGCTTAA---TTGGCAGAACA  1114