BAC Information

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BAC

Clone NameB6Ng01-113E07
Chromosome14 (Build37)
Map Location 100,251,886 - 100,385,630
singlet/doubletdoublet
Overlap geneKlf12
Upstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113E07.bB6Ng01-113E07.g
ACCDH919106DH919107
length1,1001,109
definitionDH919106|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E07, 5' end.DH919107|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,251,886 - 100,253,004)(100,384,511 - 100,385,630)
sequence
gaattccatgacctctgacaaatgttaaacttgtgggcatcagcttccac
acatatggagttacatgctagtcataggatttctatgattaagactttat
ttcattctaattatgtacatatgtgtgtgtgggtatatgcaggtaagttt
agttattcgagagggctagaagagtgtttgttcctctggggctggacttc
ccgttggttgtgaaccactggatgaaggttggctgagagctgagctcagc
tcctctgccagatcaatctgagctcttagctgcagcatcatctttccagc
cccagtagcacgaagttgaagcagataaacccaacagcagtgtgaaacag
aactgctgttctgagtagatcatgggtggtacccgaatgtggtctcctgc
tattgagagcagctgcggctccagacttttagtaaggttcttctaaaaga
cgaaaatggcacttgtaggtcgctttgaggccaaggctagaggaaattcc
ctttagctaagtggtttctttcaatacagggaagagacactggcagcact
ggatttcggatgccaaggaaatctatgttttgtgtacctgaaacaaaaat
cattattgttcatggactttccccaccatcttcatctgcccgagctgaaa
taaactggtattacagctaacagatcaggaagaaaaatgtgcttcctcaa
aggacaggtgtttcaaaaagccacaaaagataccaggtggcttattcagc
tctaagaagcccacgttgtcacacagatagcctggcaaggtaatgtcgat
gtttttgaaaggttttgtttgtgtatcagtcagctccattggtttctcac
catatccaggaacagttcatattctctagagcgaaggacagaatttcatg
gaaaatatgcacattacattgttactcctgcctgtacatttccattcttt
catttttttaattaacttggtagcatttgtaagcctaagacagacttagg
gagtcaaaacaaaataagacctaaacctcgaatcttcacaaaagttgtta
cgtaccactggcctttttagaaatgactagccttttccattgcgctatta

gaattcttaagatggactatttttattatattttattttattttttattt
gtgtatgggtactttgcctgtatgaatgtatatgcccatgtatatccata
caccacatgcattcatggaacctgcagaggatgaaattaatatttgattc
tctggaattagagtgataggtggttgtaagccactatgtaattgtttgga
attggaccctggtcctctgtatggccagcaagcactcttacccattgagc
tacctttccagcccaagagctaaattgtacttgatagtcttcccacatcc
cagttcttgcaacctcccatcctactctgtatttctgtgttcaatttgat
taactccacaaattagtgggtggtctttgatatgctttgcagatgcagtt
tcatgctacaaaattttgtataaaagtataagtccttgaaacttttctaa
aaaaaaaaaagtgtatgcacattaaggggagctagatttatcattcatgt
tggtgttttcattaaaaggctgatagcactctttgggcttctatcacctg
gaaagctgcagaatgcatggatccatcaatgtttaattcaccgcccttca
gctgtgagtctgcatgcaagcatttagaagtacagagatagttctgaaag
aaacaactagaatacccgaaaaagggcctgctaagtacagagatatttcc
aaacttctagtaatatattgaaattttaatgtaacacaaatataaaatcc
atgttaaattatagaaaattctgtacatcggtttacccagcattactttt
gaaagttcagttgtaaattcgtctccttgctttagtttgtctctaattct
taatatgcatagatttgtcactattaactgctctttcatctcattctctt
gcttctcatctgatgcccagtgttaattcaacctattaaaacatcagctt
agagggtaaaaaatgaaagatttcaaaggattctgagggtgtgtccattt
ccctttttttgtaactttttctctgaagactattgggtagagaagggcca
ggggaaagttgccaaataccagagttgcctgggaaaaactgaagattttc
aaactctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_100251886_100253004
seq2: B6Ng01-113E07.b_47_1146

seq1  GAATTCCATGACCTCTGACAAATGTTAAACTTGTGGGCATCAGCTTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACCTCTGACAAATGTTAAACTTGTGGGCATCAGCTTCCAC  50

seq1  ACATATGGAGTTACATGCTAGTCATAGGATTTCTATGATTAAGACTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGAGTTACATGCTAGTCATAGGATTTCTATGATTAAGACTTTAT  100

seq1  TTCATTCTAATTATGTACATATGTGTGTGTGGGTATATGCAGGTAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTAATTATGTACATATGTGTGTGTGGGTATATGCAGGTAAGTTT  150

seq1  AGTTATTCGAGAGGGCTAGAAGAGTGTTTGTTCCTCTGGGGCTGGACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCGAGAGGGCTAGAAGAGTGTTTGTTCCTCTGGGGCTGGACTTC  200

seq1  CCGTTGGTTGTGAACCACTGGATGAAGGTTGGCTGAGAGCTGAGCTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGGTTGTGAACCACTGGATGAAGGTTGGCTGAGAGCTGAGCTCAGC  250

seq1  TCCTCTGCCAGATCAATCTGAGCTCTTAGCTGCAGCATCATCTTTCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCCAGATCAATCTGAGCTCTTAGCTGCAGCATCATCTTTCCAGC  300

seq1  CCCAGTAGCACGAAGTTGAAGCAGATAAACCCAACAGCAGTGTGAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAGCACGAAGTTGAAGCAGATAAACCCAACAGCAGTGTGAAACAG  350

seq1  AACTGCTGTTCTGAGTAGATCATGGGTGGTACCCGAATGTGGTCTCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGTTCTGAGTAGATCATGGGTGGTACCCGAATGTGGTCTCCTGC  400

seq1  TATTGAGAGCAGCTGCGGCTCCAGACTTTTAGTAAGGTTCTTCTAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGAGCAGCTGCGGCTCCAGACTTTTAGTAAGGTTCTTCTAAAAGA  450

seq1  CGAAAATGGCACTTGTAGGTCGCTTTGAGGCCAAGGCTAGAGGAAATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAATGGCACTTGTAGGTCGCTTTGAGGCCAAGGCTAGAGGAAATTCC  500

seq1  CTTTAGCTAAGTGGTTTCTTTCAATACAGGGAAGAGACACTGGCAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTAAGTGGTTTCTTTCAATACAGGGAAGAGACACTGGCAGCACT  550

seq1  GGATTTCGGATGCCAAGGAAATCTATGTTTTGTGTACCTGAAACAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCGGATGCCAAGGAAATCTATGTTTTGTGTACCTGAAACAAAAAT  600

seq1  CATTATTGTTCATGGACTTTCCCCACCATCTTCATCTGCCCGAGCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGTTCATGGACTTTCCCCACCATCTTCATCTGCCCGAGCTGAAA  650

seq1  TAAACTGGTATTACAGCTAACAGATCAGGAAGAAAAATGTGCTTCCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGGTATTACAGCTAACAGATCAGGAAGAAAAATGTGCTTCCTCAA  700

seq1  AGGACAGGTGTTTCAAAAAGCCACAAAAGATACCAGGTGGCTTATTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGTGTTTCAAAAAGCCACAAAAGATACCAGGTGGCTTATTCAGC  750

seq1  TCTAAGAAGCCCACGTTGTCACACAGATAGCCTGGCAAGGTAATGTCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAAGCCCACGTTGTCACACAGATAGCCTGGCAAGGTAATGTCGAT  800

seq1  GTTTTTGAAAGGTTTTGTTTGTGTATCAGTCAGCTCCATTGGTTTCTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAAAGGTTTTGTTTGTGTATCAGTCAGCTCCATTGGTTTCTCAC  850

seq1  CAATATCCCAGGAACAGTTCATATTCTCCTAGAGCGAAGGACAGAATTTC  900
      | |||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  C-ATAT-CCAGGAACAGTTCATATTCT-CTAGAGCGAAGGACAGAATTTC  897

seq1  ATGGAAAAATAATGCACATTACATTGTTTAACTCCTGCCTGTACATTTCC  950
      ||||||||   |||||||||||||||||  ||||||||||||||||||||
seq2  ATGGAAAA--TATGCACATTACATTGTT--ACTCCTGCCTGTACATTTCC  943

seq1  ATTCTTTTCTATTTTTTTTAATTAACTTTGGTAGCATTTTGTAGCCTAAG  1000
      ||||||   |  |||||||||||||| ||||||||||||   ||||||||
seq2  ATTCTT---TCATTTTTTTAATTAAC-TTGGTAGCATTTGTAAGCCTAAG  989

seq1  AACAGACTTGAGGAGTCAAAACAAAATAAGACCTACAAACTCCAAAATCT  1050
       ||||||||  |||||||||||||||||||||||| || |||   |||||
seq2  -ACAGACTTAGGGAGTCAAAACAAAATAAGACCTA-AACCTC--GAATCT  1035

seq1  CCACTAAGATGTGTTACGTTAACAACTGGCCTTGTTGAGAAATGATAAGC  1100
       ||| || |  ||||||||  || ||||||||| || ||||||||  |||
seq2  TCAC-AAAAGTTGTTACGT--ACCACTGGCCTT-TTTAGAAATGACTAGC  1081

seq1  CTTTTCCATCTGGCTATTA  1119
      |||||||||   |||||||
seq2  CTTTTCCATTGCGCTATTA  1100

seq1: chr14_100384511_100385630
seq2: B6Ng01-113E07.g_68_1176 (reverse)

seq1  CCAGAGTTTGAAAATTCATCAGTCTTTTCCACAGCAAACTCTGATTTTTG  50
      |||||||||||||| || ||||| |||||| |||  ||||||| | ||||
seq2  CCAGAGTTTGAAAA-TCTTCAGT-TTTTCC-CAGGCAACTCTGGTATTTG  47

seq1  CCATCTTTTCCCCTGGCTCCTTCTCTACCCCATAGTC-TCA-AGAAAAAG  98
       || | ||||||||||| |||||||||||| |||||| ||| ||||||||
seq2  GCAAC-TTTCCCCTGGC-CCTTCTCTACCCAATAGTCTTCAGAGAAAAAG  95

seq1  TTTACAAACAAA-GGAAATGGACACACCCTCAGGAATCCTTTGAAATCTT  147
       ||||||| ||| ||||||||||||||||||| |||||||||||||||||
seq2  -TTACAAAAAAAGGGAAATGGACACACCCTCA-GAATCCTTTGAAATCTT  143

seq1  CTCATTTTTTTACCCTCTAAGCTGATGTTTTTAATAGGTTGAATTAACAC  197
       ||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  -TCA-TTTTTTACCCTCTAAGCTGATG-TTTTAATAGGTTGAATTAACAC  190

seq1  TGGGCATCAAGATGGAGAAGCAAGAAGAATGAGATGAAAGAGCAGTTAAT  247
      |||||||| |||| |||||||||| |||||||||||||||||||||||||
seq2  TGGGCATC-AGAT-GAGAAGCAAG-AGAATGAGATGAAAGAGCAGTTAAT  237

seq1  AGTGACAAATCTATGCATATTAAGAATTAGAGACAAACTAAAAGCAAGGA  297
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTGACAAATCTATGCATATTAAGAATTAGAGACAAACT-AAAGCAAGGA  286

seq1  GACGAATTTACAACTGAACTTTCAAAGTTAATGCTGGGTAAACCGATGTA  347
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  GACGAATTTACAACTGAACTTTCAAAAGTAATGCTGGGTAAACCGATGTA  336

seq1  CAGAATTTTCTATAATTTAACATGGATTTTATATTTGTGTTACATTAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTTCTATAATTTAACATGGATTTTATATTTGTGTTACATTAAAA  386

seq1  TTTCAATATATTACTAGAAGTTTGGAAATATCTCTGTACTTAGCAGGCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATATTACTAGAAGTTTGGAAATATCTCTGTACTTAGCAGGCCC  436

seq1  TTTTTCGGGTATTCTAGTTGTTTCTTTCAGAACTATCTCTGTACTTCTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGGGTATTCTAGTTGTTTCTTTCAGAACTATCTCTGTACTTCTAA  486

seq1  ATGCTTGCATGCAGACTCACAGCTGAAGGGCGGTGAATTAAACATTGATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGCATGCAGACTCACAGCTGAAGGGCGGTGAATTAAACATTGATG  536

seq1  GATCCATGCATTCTGCAGCTTTCCAGGTGATAGAAGCCCAAAGAGTGCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATGCATTCTGCAGCTTTCCAGGTGATAGAAGCCCAAAGAGTGCTA  586

seq1  TCAGCCTTTTAATGAAAACACCAACATGAATGATAAATCTAGCTCCCCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTTTAATGAAAACACCAACATGAATGATAAATCTAGCTCCCCTT  636

seq1  AATGTGCATACACTTTTTTTTTTTTAGAAAAGTTTCAAGGACTTATACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCATACACTTTTTTTTTTTTAGAAAAGTTTCAAGGACTTATACTT  686

seq1  TTATACAAAATTTTGTAGCATGAAACTGCATCTGCAAAGCATATCAAAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAAAATTTTGTAGCATGAAACTGCATCTGCAAAGCATATCAAAGA  736

seq1  CCACCCACTAATTTGTGGAGTTAATCAAATTGAACACAGAAATACAGAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTAATTTGTGGAGTTAATCAAATTGAACACAGAAATACAGAGT  786

seq1  AGGATGGGAGGTTGCAAGAACTGGGATGTGGGAAGACTATCAAGTACAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGAGGTTGCAAGAACTGGGATGTGGGAAGACTATCAAGTACAAT  836

seq1  TTAGCTCTTGGGCTGGAAAGGTAGCTCAATGGGTAAGAGTGCTTGCTGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTTGGGCTGGAAAGGTAGCTCAATGGGTAAGAGTGCTTGCTGGC  886

seq1  CATACAGAGGACCAGGGTCCAATTCCAAACAATTACATAGTGGCTTACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAGGACCAGGGTCCAATTCCAAACAATTACATAGTGGCTTACAA  936

seq1  CCACCTATCACTCTAATTCCAGAGAATCAAATATTAATTTCATCCTCTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTATCACTCTAATTCCAGAGAATCAAATATTAATTTCATCCTCTGC  986

seq1  AGGTTCCATGAATGCATGTGGTGTATGGATATACATGGGCATATACATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCATGAATGCATGTGGTGTATGGATATACATGGGCATATACATTC  1036

seq1  ATACAGGCAAAGTACCCATACACAAATAAAAAATAAAATAAAATATAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGCAAAGTACCCATACACAAATAAAAAATAAAATAAAATATAATA  1086

seq1  AAAATAGTCCATCTTAAGAATTC  1120
      |||||||||||||||||||||||
seq2  AAAATAGTCCATCTTAAGAATTC  1109