BAC Information

Click to search

BAC

Clone NameB6Ng01-113L02
Chromosome14 (Build37)
Map Location 47,680,452 - 47,908,673
singlet/doubletdoublet
Overlap geneSamd4, Gch1, Wdhd1, Socs4
Upstream geneLOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1
Downstream geneLOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113L02.bB6Ng01-113L02.g
ACCDH919420DH919421
length388329
definitionDH919420|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L02, 5' end.DH919421|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,680,452 - 47,680,845)(47,908,345 - 47,908,673)
sequence
ttgcatgtaggaatgaaagtcacgactcttctcctgcttatttcccactt
aatggagttctttttaaatctctggcaagagaaagtctctcccctaccaa
ccagagagggaatggtctgttggctatgtttttctctgttgttcttttgg
gattcattgttgttgtagagacagggtcttaatgtatagctgggaggttg
cattcctaaggactgagatttctttctcactgctcacccatcctccctgc
aggaaagataggtagctccttagatacatggtactgagctaggcgctgtg
caattaggctgacttccttaatgatgtacaggttgaaggagcctacattt
cccacgaatgtgtctggaaataagtcttcatgaaggcc
tttattattagaaatagttacgagctagtggttgagaactaataaccagt
attgtttcttctcttgtttccatttctactgattcaaacaagaacaattt
taagttgtaaagtttttagaatttaagtaaataattaccactaatcaatg
ggaatgccaagtaaatattcttaaatgagttttgccaattaatttcagta
agtggttaattacatcattatcaatctatgtagcttttagaagtatttta
ctcatataatactcttacattcttgatcacttgaaaataagtaggtaaat
ttcttcagagcattccttggctacacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_47680452_47680845
seq2: B6Ng01-113L02.b_48_441

seq1  GAATTCTTGCATGTAGGAATGAAAGTCAAGACTCTTCTCCTGCTTATTTC  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCTTGCATGTAGGAATGAAAGTCACGACTCTTCTCCTGCTTATTTC  50

seq1  CCACTTAATGGAGTTCTTTTTAAATCTCTGGCAAGAGAAAGTCTCTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAATGGAGTTCTTTTTAAATCTCTGGCAAGAGAAAGTCTCTCCCC  100

seq1  TACCAACCAGAGAGGGAATGGTCTGTTGGCTATGTTTTTCTCTGTTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACCAGAGAGGGAATGGTCTGTTGGCTATGTTTTTCTCTGTTGTTC  150

seq1  TTTTGGGATTCATTGTTGTTGTAGAGACAGGGTCTTAATGTATAGCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGATTCATTGTTGTTGTAGAGACAGGGTCTTAATGTATAGCTGGG  200

seq1  AGGTTGCATTCCTAAGGACTGAGATTTCTTTCTCACTGCTCACCCATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCATTCCTAAGGACTGAGATTTCTTTCTCACTGCTCACCCATCCT  250

seq1  CCCTGCAGGAAAGAGAGGTAGCTCCTTAGATACATGGTACTGAGCTAGGC  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGGAAAGATAGGTAGCTCCTTAGATACATGGTACTGAGCTAGGC  300

seq1  GCTGTGCAAGTAGGCTGACCTCCTTAAGGATGTACAGGTTGAAGGAGCCT  350
      ||||||||| ||||||||| ||||||| ||||||||||||||||||||||
seq2  GCTGTGCAATTAGGCTGACTTCCTTAATGATGTACAGGTTGAAGGAGCCT  350

seq1  ACATTTCCCACGAATGTGTCTGGAAATAAGTCTTCAGGAAGGCC  394
      |||||||||||||||||||||||||||||||||||| |||||||
seq2  ACATTTCCCACGAATGTGTCTGGAAATAAGTCTTCATGAAGGCC  394

seq1: chr14_47908345_47908673
seq2: B6Ng01-113L02.g_79_407 (reverse)

seq1  TATGTGTAGCCAAGGAATGCTCTGTAGAAATTTACCTACTTATTTTCAAG  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATGTGTAGCCAAGGAATGCTCTGAAGAAATTTACCTACTTATTTTCAAG  50

seq1  TGATCAAGAATGTAAGAGTATTATATGAGTAAAATACTTCTAAAAGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGAATGTAAGAGTATTATATGAGTAAAATACTTCTAAAAGCTAC  100

seq1  ATAGATTGATAATGATGTAATTAACCACTTACTGAAATTAATTGGCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTGATAATGATGTAATTAACCACTTACTGAAATTAATTGGCAAAA  150

seq1  CTCATTTAAGAATATTTACTTGGCATTCCCATTGCTTAGTGGTAATTATT  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCATTTAAGAATATTTACTTGGCATTCCCATTGATTAGTGGTAATTATT  200

seq1  TACTTAAATTCTAAAAACTTTACAACTTAAAATTGTTCTTGTTTGAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAATTCTAAAAACTTTACAACTTAAAATTGTTCTTGTTTGAATCA  250

seq1  GTAGAAATGGAAACAAGAGAAGAAACAATACTGGTTATTAGTTCTCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATGGAAACAAGAGAAGAAACAATACTGGTTATTAGTTCTCAACC  300

seq1  ACTAGCTCGTAACTATTTCTAATTATAAA  329
      ||||||||||||||||||||||| |||||
seq2  ACTAGCTCGTAACTATTTCTAATAATAAA  329