BAC Information

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BAC

Clone NameB6Ng01-114O16
Chromosome14 (Build37)
Map Location 51,726,335 - 51,884,367
singlet/doubletdoublet
Overlap geneGm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11
Upstream geneOlfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1
Downstream geneLOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114O16.bB6Ng01-114O16.g
ACCDH920314DH920315
length1,1571,093
definitionDH920314|Mus musculus domesticus DNA, BAC clone: B6Ng01-114O16, 5' end.DH920315|Mus musculus domesticus DNA, BAC clone: B6Ng01-114O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,726,335 - 51,727,480)(51,883,269 - 51,884,367)
sequence
gaattccagggatggaactcaggctgtcagacttgttagggcaatcattt
ttatccactgtggcatctcactggcccagacaatgactctgtctaacctg
agataatagttaaccagaccttagtcagacagaaactgcttaacactgct
tggccccatcccctgtgtgttcttactgcttttgctagtgccttggaaat
ggttaaagatgccaggttcctagccttaccagcacacttacactggctaa
aggtatactttccattccactgttaccttttctatttggtttgatgtttc
agtggccagatctcacttcttgggaccacaaaagtaaagccttgagccta
gtttgataacacccattccttcccactttggacatttaatagaacattac
tctaaagatgctggctgctaaaagaagtgcgtgtgtgagagactaaactg
atatttgaataatagcaaataggaaatgagacttgatctgaattcccctt
acctgacttgagcaaagtgtcccacaaagtacaggcaggaagtaagtact
ccaagacaattatgtaaataagcaaacaatacttgaagcatggaatgtca
gttggtccaagaggaaatgctcctcccaacaacacatctgtataaataca
ttgagagtaaggaaataggatgggaggagagttctctcctgggcgccttc
aggagttggacgtgtattttgccttagttctgacgctcagttcctgcttg
acatttccggaatgacaggacagtcttgttgttcacagtacttttgatca
cacctgcgtttatgctaatgacgtgacttagagaaagactctttagtagt
ctcaagaaaagcaagtcactaaaaacaccaggtgttttggagaggtaaaa
ctttctgcccttcttaccagacttttagggaataagggtgagcgactggg
gatttcagctctatagatctcttagacaagagtatctaagagtatggtga
agatactgcacgaattgaagtggcccaaaggaacccggacactcatgtaa
tgggaacattgccctaaaccttaccctatggcatcacctcctgccagtga
gtggaaagagctgacaatacaaaaatggactcaccatgtcaagaacctgt
aagctga
gaattctataaggtcattaattcatctcaacagtattattatatgaaagt
acatcttcacagtgatctgcaggaaatctgcccagtggggtgggctgatg
cccaggaatcattaggctatgtaacagtgccaggaaaggcatcacagcag
tgagaagcaatcctgggatgaagtctatggggtcctggtctcacagagca
cacccatggcagccacacaaacgatgggccatctgcaaaacaaaacaaaa
cagaatgaaaacaacaagaacaacaacaacaaaccccttagctgcttgcc
atagcctttcctatatggcttatatgaaagttagggaacttcttctgaac
tgtgattgatggagtgtgttagtttgcctagtttttctggtgatgaatct
ctgtgactttcaaatacttcgcaggccagcacagttatctggtgacctgc
attgtgtatatatcttatatttgtcttttatctccccaggtttgctaaga
gatttgtactcataccaactacagatacaatgccacatggcggtcctgat
cttttggtgccaaagaagagatgatcctttctgttggtgtccttgcttat
tttggggagaataatgggctttccttgaatacatgacagttgcaagacta
agggctttctctgcttattaaaaatattcaacttggaaccaatttgagac
atatccattctccctctcaagtatccactggttctctctcacttccagcc
cagattggtctggaagtcagtgtgtaaccaagagtagttgagagtgaccc
tgagctttgattcttctccctcaacatcatgaatcctgtggttagaggtg
tggaccaccacagtcagctttgtgggatgctggagattgtgcatacctgg
taaggaccagtggagctacatccctctccctagactcctcatatgatcca
tagtgacacccatagtgatactgtaggatctggcaggtcttagctaacga
ggacctcctgagtgaaaccacacagagtctgggatcgatgcaaaaagcag
gagaattatattgtttcaactcattggggcatcctacatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_51726335_51727480
seq2: B6Ng01-114O16.b_50_1206

seq1  GAATTCCAGGGATGGAACTCAGGCTGTCAGACTTGTTAGGGCAATCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGATGGAACTCAGGCTGTCAGACTTGTTAGGGCAATCATTT  50

seq1  TTATCCACTGTGGCATCTCACTGGCCCAGACAATGACTCTGTCTAACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACTGTGGCATCTCACTGGCCCAGACAATGACTCTGTCTAACCTG  100

seq1  AGATAATAGTTAACCAGACCTTAGTCAGACAGAAACTGCTTAACACTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAGTTAACCAGACCTTAGTCAGACAGAAACTGCTTAACACTGCT  150

seq1  TGGCCCCATCCCCTGTGTGTTCTTACTGCTTTTGCTAGTGCCTTGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCATCCCCTGTGTGTTCTTACTGCTTTTGCTAGTGCCTTGGAAAT  200

seq1  GGTTAAAGATGCCAGGTTCCTAGCCTTACCAGCACACTTACACTGGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAGATGCCAGGTTCCTAGCCTTACCAGCACACTTACACTGGCTAA  250

seq1  AGGTATACTTTCCATTCCACTGTTACCTTTTCTATTTGGTTTGATGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATACTTTCCATTCCACTGTTACCTTTTCTATTTGGTTTGATGTTTC  300

seq1  AGTGGCCAGATCTCACTTCTTGGGACCACAAAAGTAAAGCCTTGAGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCAGATCTCACTTCTTGGGACCACAAAAGTAAAGCCTTGAGCCTA  350

seq1  GTTTGATAACACCCATTCCTTCCCACTTTGGACATTTAATAGAACATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATAACACCCATTCCTTCCCACTTTGGACATTTAATAGAACATTAC  400

seq1  TCTAAAGATGCTGGCTGCTAAAAGAAGTGCGTGTGTGAGAGACTAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGATGCTGGCTGCTAAAAGAAGTGCGTGTGTGAGAGACTAAACTG  450

seq1  ATATTTGAATAATAGCAAATAGGAAATGAGACTTGATCTGAATTCCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAATAATAGCAAATAGGAAATGAGACTTGATCTGAATTCCCCTT  500

seq1  ACCTGACTTGAGCAAAGTGTCCCACAAAGTACAGGCAGGAAGTAAGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTTGAGCAAAGTGTCCCACAAAGTACAGGCAGGAAGTAAGTACT  550

seq1  CCAAGACAATTATGTAAATAAGCAAACAATACTTGAAGCATGGAATGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAATTATGTAAATAAGCAAACAATACTTGAAGCATGGAATGTCA  600

seq1  GTTGGTCCAAGAGGAAATGCTCCTCCCAACAACACATCTGTATAAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCCAAGAGGAAATGCTCCTCCCAACAACACATCTGTATAAATACA  650

seq1  TTGAGAGTAAGGAAATAGGATGGGAGGAGAGTTCTCTCCTGGGCGCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTAAGGAAATAGGATGGGAGGAGAGTTCTCTCCTGGGCGCCTTC  700

seq1  AGGAGTTGGACGTGTA-TTTGCCTTAGTTCTGACGCTCAGTTCCTGCTTG  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGAGTTGGACGTGTATTTTGCCTTAGTTCTGACGCTCAGTTCCTGCTTG  750

seq1  ACATTTCCGGAATGACAGGACAGTCTTGTTGTTCACAGTACTTTTGATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCGGAATGACAGGACAGTCTTGTTGTTCACAGTACTTTTGATCA  800

seq1  CACCTGCGTTTATGCTAATGACGTGACTTAGAGAAAGACTC-TTAGTAGT  848
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACCTGCGTTTATGCTAATGACGTGACTTAGAGAAAGACTCTTTAGTAGT  850

seq1  CTCAAGAAAAGCAAGTCACTAAAAACACCAGGTG-TTTGGAGAGTTAAAA  897
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  CTCAAGAAAAGCAAGTCACTAAAAACACCAGGTGTTTTGGAGAGGTAAAA  900

seq1  CTTTCTGCCCTTCTTACCAGAC-TTTAGGGATTAGGGTAGAGCGACT-GG  945
      |||||||||||||||||||||| |||||||| || ||  |||||||| ||
seq2  CTTTCTGCCCTTCTTACCAGACTTTTAGGGAATAAGGGTGAGCGACTGGG  950

seq1  GAATTCAGCTCTATAGATCTCTTAGACAAGAGTATCTAAGAGTAT-GTGA  994
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GATTTCAGCTCTATAGATCTCTTAGACAAGAGTATCTAAGAGTATGGTGA  1000

seq1  AGATACTGCACGAA-TGAAGT-GCCCAAAGGAACCCGGACACTCCATGGA  1042
      |||||||||||||| |||||| ||||||||||||||||||||| |||| |
seq2  AGATACTGCACGAATTGAAGTGGCCCAAAGGAACCCGGACACT-CATGTA  1049

seq1  AT-GGAACA-TGCCCTAGACCTTACCCTAT-GCATCACCT-CTGCCAGTG  1088
      || |||||| ||||||| |||||||||||| ||||||||| |||||||||
seq2  ATGGGAACATTGCCCTAAACCTTACCCTATGGCATCACCTCCTGCCAGTG  1099

seq1  GAAGTGG-AAGAGCTGACAATAC-AAAATGGACTCACTATGTCAAGAACC  1136
        ||||| ||||||||||||||| ||||||||||||| ||||||||||||
seq2  --AGTGGAAAGAGCTGACAATACAAAAATGGACTCACCATGTCAAGAACC  1147

seq1  TGTAAGCTGA  1146
      ||||||||||
seq2  TGTAAGCTGA  1157

seq1: chr14_51883269_51884367
seq2: B6Ng01-114O16.g_70_1162 (reverse)

seq1  TTAGGTGTAGGATGGCCCCAATGAGTTGGAACAATAATAAATTCCTCTTG  50
      |||| |||||||| |||||||||||||| |||||| ||||  | ||| ||
seq2  TTAGATGTAGGAT-GCCCCAATGAGTTGAAACAAT-ATAA--TTCTCCTG  46

seq1  CTTTTTGCATCGATCCCAGGCTCTGTGTGG-TTCACTCAGGGGGTCCTCG  99
      ||||||||||||||||||| |||||||||| |||||||||| ||||||| 
seq2  CTTTTTGCATCGATCCCAGACTCTGTGTGGTTTCACTCAGGAGGTCCTC-  95

seq1  GTAAGCTAAGACCTGCCAGAATCTTACAGTATCACTATGGGTGTCACTAT  149
      || |||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  GTTAGCTAAGACCTGCCAG-ATCCTACAGTATCACTATGGGTGTCACTAT  144

seq1  GGATCATAATGAGGAGTCTAGGGAGAGGGATGTAGCTCCACTGGTCCTTA  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAT-ATGAGGAGTCTAGGGAGAGGGATGTAGCTCCACTGGTCCTTA  193

seq1  CCAGGTATGCACAATCTCCAGCATCCCACAAAGCTGACTGTGGTGGTCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTATGCACAATCTCCAGCATCCCACAAAGCTGACTGTGGTGGTCCA  243

seq1  CACCTCTAACCACAGGATTCATGATGTTGAGGGAGAAGAATCAAAGCTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTAACCACAGGATTCATGATGTTGAGGGAGAAGAATCAAAGCTCA  293

seq1  GGGTCACTCTCAACTACTCTTGGTTACACACTGACTTCCAGACCAATCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACTCTCAACTACTCTTGGTTACACACTGACTTCCAGACCAATCTG  343

seq1  GGCTGGAAGTGAGAGAGAACCAGTGGATACTTGAGAGGGAGAATGGATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAGTGAGAGAGAACCAGTGGATACTTGAGAGGGAGAATGGATAT  393

seq1  GTCTCAAATTGGTTCCAAGTTGAATATTTTTAATAAGCAGAGAAAGCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAATTGGTTCCAAGTTGAATATTTTTAATAAGCAGAGAAAGCCCT  443

seq1  TAGTCTTGCAACTGTCATGTATTCAAGGAAAGCCCATTATTCTCCCCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTGCAACTGTCATGTATTCAAGGAAAGCCCATTATTCTCCCCAAA  493

seq1  ATAAGCAAGGACACCAACAGAAAGGATCATCTCTTCTTTGGCACCAAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAGGACACCAACAGAAAGGATCATCTCTTCTTTGGCACCAAAAG  543

seq1  ATCAGGACCGCCATGTGGCATTGTATCTGTAGTTGGTATGAGTACAAATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGACCGCCATGTGGCATTGTATCTGTAGTTGGTATGAGTACAAATC  593

seq1  TCTTAGCAAACCTGGGGAGATAAAAGACAAATATAAGATATATACACAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCAAACCTGGGGAGATAAAAGACAAATATAAGATATATACACAAT  643

seq1  GCAGGTCACCAGATAACTGTGCTGGCCTGCGAAGTATTTGAAAGTCACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCACCAGATAACTGTGCTGGCCTGCGAAGTATTTGAAAGTCACAG  693

seq1  AGATTCATCACCAGAAAAACTAGGCAAACTAACACACTCCATCAATCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATCACCAGAAAAACTAGGCAAACTAACACACTCCATCAATCACA  743

seq1  GTTCAGAAGAAGTTCCCTAACTTTCATATAAGCCATATAGGAAAGGCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAGAAGTTCCCTAACTTTCATATAAGCCATATAGGAAAGGCTAT  793

seq1  GGCAAGCAGCTAAGGGGTTTGTTGTTGTTGTTCTTGTTGTTTTCATTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAGCTAAGGGGTTTGTTGTTGTTGTTCTTGTTGTTTTCATTCTG  843

seq1  TTTTGTTTTGTTTTGCAGATGGCCCATCGTTTGTGTGGCTGCCATGGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGCAGATGGCCCATCGTTTGTGTGGCTGCCATGGGTG  893

seq1  TGCTCTGTGAGACCAGGACCCCATAGACTTCATCCCAGGATTGCTTCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTGAGACCAGGACCCCATAGACTTCATCCCAGGATTGCTTCTCA  943

seq1  CTGCTGTGATGCCTTTCCTGGCACTGTTACATAGCCTAATGATTCCTGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGATGCCTTTCCTGGCACTGTTACATAGCCTAATGATTCCTGGG  993

seq1  CATCAGCCCACCCCACTGGGCAGATTTCCTGCAGATCACTGTGAAGATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCCCACCCCACTGGGCAGATTTCCTGCAGATCACTGTGAAGATGT  1043

seq1  ACTTTCATATAATAATACTGTTGAGATGAATTAATGACCTTATAGAATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATATAATAATACTGTTGAGATGAATTAATGACCTTATAGAATTC  1093