BAC Information

Click to search

BAC

Clone NameB6Ng01-116F07
Chromosome14 (Build37)
Map Location 41,693,857 - 41,837,995
singlet/doubletdoublet
Overlap geneSh2d4b, Tspan14, 5730469M10Rik
Upstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
Downstream geneDydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116F07.bB6Ng01-116F07.g
ACCDH921355DH921356
length1,1961,141
definitionDH921355|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F07, 5' end.DH921356|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,693,857 - 41,695,065)(41,836,844 - 41,837,995)
sequence
gaattcctgtacatgcctgatagacatatcaaaatacttaatttcactac
caattaaaaatacagtatccaaacaggagtgaactgtcatcttgctcata
aaacactgaaaagcacagaaaggtacaatggcttcaagagtggaaagatt
cttaaaattctctcaaaggagaaaacacaggcacgcccgtttttattatt
cctataccctcaaatgatttgaatgagaagtttttaagtattattcttaa
agacataatgtgaaccagcaaaacaacttagcaggtaaaggtgcttgctg
ccagacctgatggcctgagttcagtcctggatactcacacgatgaaatga
gagaacggactcctacaagttgtcttctgacctccatacatatgtgatgg
cacatgcatacacacacacacacaaacacacacacacacatgactaatac
tataataacataacttgccacagacactaggtattcataagacagataat
aataagaattggcaaaaatagagaaaaacacatccacttgtaacggctgc
ttggagtataggttacaagatactccagtgatccaaccaaaagaaatgaa
accatgtttccatgcagaaatgtccatgtgaggccaggcacagtaccata
cacatgtaaagccagcacctggagggatgatgcaggaggatccctgtgag
ttttgaggccagcctatgctgtatattaaagtcatatctcaaaaagaaca
accaaccagcaaacaactttgtgcataaatgttcatagatgtattgctca
caacagtctaaaaggggcaaataagccatggattcgtaacagaaaaatga
atcaacaaatatgggccatggtgtagggggacatacctagaatcctggga
cctggtaggctgaggcagaagggtcattagatgccaacctgaactatata
gccagatctcttcttatttagaagacaaatgttctaaagaccaaattgat
gcaaacctttcgatgctaccttaaattcgagcataaaggatgatctagat
ttgcataatagaagagccgtataaagaatatacactggaaaagaacaagt
ttgatgactatatatttacagcctgaggttcactacaagcaagcttcgaa
tttactagaaggccacaacacttatggttcatgtttaggatagaca
gaattccagagagagagagagagagagagagagagagagagagagagaga
ggaatggatatttgagtgcaaatacacatctttgtttatatatagtaatt
gaactggcaggtattcatattggaatatatcccacataatagataatggg
atagacacggtgatggggactccaaatcaccaaagagaagacctgctagg
caaaagctttgagcggatgtcttgtgaagggagggtggagtgagcacaga
aatacctgctgctggtttctccctgcagtagctggtgtcacagcagctct
aacagtgagctcagtagctccttagaaacagaaaccgggtgtcctgcttc
tacattggctcccaaggtgactgtccctgtgccaatgaaaagcacagttg
gtattttaggatgtcatgaagagggtctccagtatggggcaggagggagc
tggtggtaagtgtgctactctaagcaggccatggcggagagagagagctt
tccatcatcccaactaagactcttgtctggacacatgtcacactgaacag
gatgctagaaaaaggactacatatgcagactttttctctaaggctctttc
ttagtcacttcgagactagagatgagagtgcccatcttgtgaatagtctt
tctagacaaggcttctcttcttctcagagcacccagcctctccagtctca
atgacagtactgatgatttttacataacaactaatggtaaaatgagagat
ggagaaagccattttctagatcccaggtacccaggatatgaagtttgagg
acacttttggctttgtcagtattttgtttgtattacttaggttaaaattc
ccaacaacacccatgtctataagtttcaaagggaacttctccctcatctc
tactcctgtacttctctctcaccatcaccattgttacaacaggtaatatt
ccctctgaatctccaaggtgtagacaatcttagtgtgcatagagagaaca
atgcacacctcccatcaccatgggcagggagccacagccagcaatgcaac
gaggtctaggagatcccttttccattagggacctcccatccagtaagagg
attttctctgacatgaacacagaaaaggaattcaagatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_41693857_41695065
seq2: B6Ng01-116F07.b_46_1241

seq1  GAATTCCTGTACATGCCTGATAGACATATCAAAATACTTAATTTCACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTACATGCCTGATAGACATATCAAAATACTTAATTTCACTAC  50

seq1  CAATTAAAAATACAGTATCCAAACAGGAGTGAACTGTCATCTTGCTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAAATACAGTATCCAAACAGGAGTGAACTGTCATCTTGCTCATA  100

seq1  AAACACTGAAAAGCACAGAAAGGTACAATGGCTTCAAGAGTGGAAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGAAAAGCACAGAAAGGTACAATGGCTTCAAGAGTGGAAAGATT  150

seq1  CTTAAAATTCTCTCAAAGGAGAAAACACAGGCACGCCCGTTTTTATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTCTCTCAAAGGAGAAAACACAGGCACGCCCGTTTTTATTATT  200

seq1  CCTATACCCTCAAATGATTTGAATGAGAAGTTTTTAAGTATTATTCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACCCTCAAATGATTTGAATGAGAAGTTTTTAAGTATTATTCTTAA  250

seq1  AGACATAATGTGAACCAGCAAAACAACTTAGCAGGTAAAGGTGCTTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAATGTGAACCAGCAAAACAACTTAGCAGGTAAAGGTGCTTGCTG  300

seq1  CCAGACCTGATGGCCTGAGTTCAGTCCTGGATACTCACACGATGAAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTGATGGCCTGAGTTCAGTCCTGGATACTCACACGATGAAATGA  350

seq1  GAGAACGGACTCCTACAAGTTGTCTTCTGACCTCCATACATATGTGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACGGACTCCTACAAGTTGTCTTCTGACCTCCATACATATGTGATGG  400

seq1  CACATGCATACACACACACACACAAACACACACACACACATGACTAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCATACACACACACACACAAACACACACACACACATGACTAATAC  450

seq1  TATAATAACATAACTTGCCACAGACACTAGGTATTCATAAGACAGATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAACATAACTTGCCACAGACACTAGGTATTCATAAGACAGATAAT  500

seq1  AATAAGAATTGGCAAAAATAGAGAAAAACACATCCACTTGTAACGGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATTGGCAAAAATAGAGAAAAACACATCCACTTGTAACGGCTGC  550

seq1  TTGGAGTATAGGTTACAAGATACTCCAGTGATCCAACCAAAAGAAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTATAGGTTACAAGATACTCCAGTGATCCAACCAAAAGAAATGAA  600

seq1  ACCATGTTTCCATGCAGAAATGTCCATGTGAGGCCAGGCACAGTACCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTTCCATGCAGAAATGTCCATGTGAGGCCAGGCACAGTACCATA  650

seq1  CACATGTAAAGCCAGCACCTGGAGGGATGATGCAGGAGGATCCCTGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAAAGCCAGCACCTGGAGGGATGATGCAGGAGGATCCCTGTGAG  700

seq1  -TTTGAGGCCAGCCTATGCTGTATATTAAAGTCATATCTCAAAAAGAACA  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGCCAGCCTATGCTGTATATTAAAGTCATATCTCAAAAAGAACA  750

seq1  ACCAACCAGCAAACAACTTTGTGCATAAATGTTCATAGATGTATTGCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAGCAAACAACTTTGTGCATAAATGTTCATAGATGTATTGCTCA  800

seq1  CAACAGTCTAAAAGGGGCAAATAAGCCATGGATTCGTAACAGAAAAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTCTAAAAGGGGCAAATAAGCCATGGATTCGTAACAGAAAAATGA  850

seq1  ATCAACAAATAT-GGCCATGGTGTAGGGGGACATACCTAGAATCCTGGGA  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAATATGGGCCATGGTGTAGGGGGACATACCTAGAATCCTGGGA  900

seq1  CCTGGTAGGCTGAGGCAGAAGGGTCATTAGATGCCAACCTGAACTATATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGGCTGAGGCAGAAGGGTCATTAGATGCCAACCTGAACTATATA  950

seq1  GCCAGATCTCTTCTTATTTAGAAGAACAAATGTTCTAAAAGACCAAATTG  998
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  GCCAGATCTCTTCTTATTTAGAAG-ACAAATGTTCT-AAAGACCAAATTG  998

seq1  ATGCAAACC-TTCGATGCTACCTTAAATTCCGAGCATAAAGGATGATTCT  1047
      ||||||||| ||||||||||||||||||| |||||||||||||||| |||
seq2  ATGCAAACCTTTCGATGCTACCTTAAATT-CGAGCATAAAGGATGA-TCT  1046

seq1  AAGATTTGGCATAATAGAAGAGCCGTAATAAAGAATATACACCTTGGAAA  1097
       |||||| |||||||||||||||||| |||||||||||||||  ||||||
seq2  -AGATTT-GCATAATAGAAGAGCCGT-ATAAAGAATATACAC--TGGAAA  1091

seq1  AGAACAAGTTTGGATGACCTATATATTTACAGCTTGAAGTTCACTACAAA  1147
      ||||||||||| ||||| ||||||||||||||| ||| ||||||||| ||
seq2  AGAACAAGTTT-GATGA-CTATATATTTACAGCCTGAGGTTCACTAC-AA  1138

seq1  GCAACAGCTTTCAGATTTACTAGAAAGCCACAACCACTATGGTGTTCATG  1197
      |||  ||| |||  ||||||||||| ||||||||   ||||  |||||||
seq2  GCA--AGC-TTCGAATTTACTAGAAGGCCACAACACTTATG--GTTCATG  1183

seq1  -TTAGGATAGACA  1209
       ||||||||||||
seq2  TTTAGGATAGACA  1196

seq1: chr14_41836844_41837995
seq2: B6Ng01-116F07.g_68_1208 (reverse)

seq1  TTGATC-TGAAATCCTTTTCTGTG-TCATAGTCA-AGAAGAATCCATCTT  47
      |||||| |||| |||||||||||| |||| |||| |||| ||||| || |
seq2  TTGATCTTGAATTCCTTTTCTGTGTTCAT-GTCAGAGAA-AATCC-TC-T  46

seq1  TACTTGAGTGGAGGTCCCTAATGGGAAAGGGAACTCCTAGACCTACTGTT  97
      |||| ||  ||||||||||||||| ||||||| |||||||||||   |||
seq2  TACTGGATGGGAGGTCCCTAATGGAAAAGGGATCTCCTAGACCT--CGTT  94

seq1  GGCATTGCTGGCTTGTGGCTCCCTGCCACTGCTGATGGGAAGTGTGCATT  147
       ||||||||||| ||||||||||||||  || |||||||| |||||||||
seq2  -GCATTGCTGGC-TGTGGCTCCCTGCCCATGGTGATGGGAGGTGTGCATT  142

seq1  GGTTCTCTCTATGCACACTAAGATTGTCTACACATGGAAGATTCAGAAGG  197
       |||||||||||||||||||||||||||||||| | | |||||||| |||
seq2  -GTTCTCTCTATGCACACTAAGATTGTCTACACCTTGGAGATTCAG-AGG  190

seq1  GAATATTACCTGTTGGTAACAATGGTGATGGTGAGAGAGAAGTACAGGAG  247
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATATTACCTGTT-GTAACAATGGTGATGGTGAGAGAGAAGTACAGGAG  239

seq1  TAAGAGATGAGGGAGAAGTTCCCTTTGAAACTTATAGACATGGGTGTTGT  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AGAGATGAGGGAGAAGTTCCCTTTGAAACTTATAGACATGGGTGTTGT  288

seq1  TGGGAATTTTAAACCTAAGTAATTACAAACAAAATACTGACAAAGCCAAA  347
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TGGGAATTTT-AACCTAAGTAA-TACAAACAAAATACTGACAAAGCCAAA  336

seq1  AGTGTCCTCACACTTCATATCCTGGGTACCTGGGATCTAGAAAATGGCTT  397
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTCAAACTTCATATCCTGGGTACCTGGGATCTAGAAAATGGCTT  386

seq1  TCTCCATCTCTCATTTTACCATTAGTTGTTATGTAAAAATCATCAGTACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTCTCATTTTACCATTAGTTGTTATGTAAAAATCATCAGTACT  436

seq1  GTCATTGAGACTGGAGAGGCTGGGTGCTCTGAGAAGAAGAGAAGCCTTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGAGACTGGAGAGGCTGGGTGCTCTGAGAAGAAGAGAAGCCTTGT  486

seq1  CTAGAAAGACTATTCACAAGATGGGCACTCTCATCTCTAGTCTCGAAGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGACTATTCACAAGATGGGCACTCTCATCTCTAGTCTCGAAGTG  536

seq1  ACTAAGAAAGAGCCTTAGAGAAAAAGTCTGCATATGTAGTCCTTTTTCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAAAGAGCCTTAGAGAAAAAGTCTGCATATGTAGTCCTTTTTCTA  586

seq1  GCATCCTGTTCAGTGTGACATGTGTCCAGACAAGAGTCTTAGTTGGGATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGTTCAGTGTGACATGTGTCCAGACAAGAGTCTTAGTTGGGATG  636

seq1  ATGGAAAGCTCTCTCTCTCCGCCATGGCCTGCTTAGAGTAGCACACTTAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGCTCTCTCTCTCCGCCATGGCCTGCTTAGAGTAGCACACTTAC  686

seq1  CACCAGCTCCCTCCTGCCCCATACTGGAGACCCTCTTCATGACATCCTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTCCCTCCTGCCCCATACTGGAGACCCTCTTCATGACATCCTAA  736

seq1  AATACCAACTGTGCTTTTCATTGGCACAGGGACAGTCACCTTGGGAGCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAACTGTGCTTTTCATTGGCACAGGGACAGTCACCTTGGGAGCCA  786

seq1  ATGTAGAAGCAGGACACCCGGTTTCTGTTTCTAAGGAGCTACTGAGCTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAGCAGGACACCCGGTTTCTGTTTCTAAGGAGCTACTGAGCTCA  836

seq1  CTGTTAGAGCTGCTGTGACACCAGCTACTGCAGGGAGAAACCAGCAGCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGAGCTGCTGTGACACCAGCTACTGCAGGGAGAAACCAGCAGCAG  886

seq1  GTATTTCTGTGCTCACTCCACCCTCCCTTCACAAGACATCCGCTCAAAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTGTGCTCACTCCACCCTCCCTTCACAAGACATCCGCTCAAAGC  936

seq1  TTTTGCCTAGCAGGTCTTCTCTTTGGTGATTTGGAGTCCCCATCACCGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTAGCAGGTCTTCTCTTTGGTGATTTGGAGTCCCCATCACCGTG  986

seq1  TCTATCCCATTATCTATTATGTGGGATATATTCCAATATGAATACCTGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCCATTATCTATTATGTGGGATATATTCCAATATGAATACCTGCC  1036

seq1  AGTTCAATTACTATATATAAACAAAGATGTGTATTTGCACTCAAATATCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATTACTATATATAAACAAAGATGTGTATTTGCACTCAAATATCC  1086

seq1  ATTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGG  1136

seq1  AATTC  1152
      |||||
seq2  AATTC  1141