BAC Information

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BAC

Clone NameB6Ng01-116F09
Chromosome14 (Build37)
Map Location 40,476,349 - 40,556,735
singlet/doubletdoublet
Overlap genenone
Upstream geneNrg3
Downstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116F09.bB6Ng01-116F09.g
ACCDH921359DH921360
length1,170918
definitionDH921359|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F09, 5' end.DH921360|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,555,548 - 40,556,735)(40,476,349 - 40,477,283)
sequence
gaattcctgaaacattgcatggtaccatgtactttcccatccatatacac
ttactttaaattataaattatgtatagcataatattaacaataataactg
aagcaaagtaggataagtataaggatttgttataagttgcttatttttcc
tttattccctgtactttccatctactatttcctgacaatagatgatctga
gttaccaaagcccagtaaagacagactatgtataattattgccttcagtc
tatttaaaaataaacacatgaaacaggcagaaacttaggacattttagca
tacaaatggaaatcatatatcaaataataagcaagcatgaagtaggaagg
ctcacgcccatcatgacttcacttctgctgcagcatgagcaggctaaccc
agatgaatgcatctctcatctgggatatttctttttgtagtcaatgacta
ttaacacagggacgcacaactagagaataggagcctgtagagtgcacttc
tcagccctaaacaggacatctgtgtcacatttcttcctacaagagatgag
ggaccattttgagagaggcagaggaggataacagggaaacgatgtttttg
agacatgattctgcagttgcatagtcaaactcatgtctgttatgaaagca
tgcacaatacatttgcaagattaagtcagaaaaaatccaagtatggtggg
gtttaaatcccacctttagctgaggagctattggttactgatgatgattg
agagagggagagtcagttttcttcagggatgcatcccctggcaagctact
catgcacatattggcagcatggagtgggaccaatggattaaaaacaacaa
acaaaccaacaataacaacaacaaaaaatcaaaaccccatgaaattggaa
agtagtaagtgagtagaactatattggatatgaaggagtatgagataaaa
ctttgtttaattttaattttaaagcaatatatgtacatatgaaataaaag
caataaaatataacatagctgtattatcccagcacttgggtggtgaggac
agaggacagagtttaggcctttctcagctactagtaaaatgtgaaaagca
acactaacacaatacagtgaaaatgtaaagtagaatcatttgcatgtctt
ccataaaatgtaatgaaaag
gaattcagctcagctctgatccaagctgacaggatgaagttatagaagag
gaagttagaaggaaggatgaatgggtgtgtcagttaagttgtgaaaacag
aaaatacaaaagtccagtaaagcaagctgattcttggaaataattaggca
tggtagtttcaggtcagggtgtatttttaaagtttattctaggtagaggt
tttagagggtagccaatcccagagaaatcacctctgggaaatcaagctga
tgtttatctattctctagtgatggggtcagataaagtaagttttattggt
aatgaactggtctgacagtccaaggttaggtccagttgatagaaagttct
aaaggagcctggctaaagtttggttaattttacattgatacatcttgaat
ttaaaattaaatcaattttgagcttgttaaaaagtatctggaattttaag
agtccagcttttattgattatcataaattctggttgatgtatctgaaatg
gattgtgctcagcattgatggtcatacatgcaaaagcagatgtaaggggc
tggtattgaatactaaagtgaaggaaagagattaagactgagagagatta
gtaagcataatattgacatatctatgaggttgagtttcttggcaaaggat
aaagcatagttggagaagagaaagctccttgggacaaatcccggaagcat
gccaactggggaagcatgcgttgaattgattctctaggcctgaagatgtt
tttctttgggtttttttttacctttttaatttctcagagatattggtgta
tggcttaaggatgtggagggtatttgatagccattgcctcaaatatgtct
cttgttatcgtattatcctcccacatatagtgcaacttattcatttttcc
tcactgtaatgaatttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_40555548_40556735
seq2: B6Ng01-116F09.b_49_1218 (reverse)

seq1  CTTTTCATTACATTTTTTAATTTGCAGACATGCAAATGATCTTACTTCTA  50
      ||||||||||||||||     | | |||||||||||||||  ||||| ||
seq2  CTTTTCATTACATTTT----ATGGAAGACATGCAAATGATTCTACTT-TA  45

seq1  CAATTTTCACTGTATGTGT-TTAGTTGTTTGCTTTTTCACATTTTTACTA  99
      | ||||||||||||| ||| |||||   |||| |||||||| ||||||||
seq2  C-ATTTTCACTGTAT-TGTGTTAGT--GTTGC-TTTTCACA-TTTTACTA  89

seq1  TGTAGCTGAGAAAGGCCTTAAACTCCTTGTCCTCTTGTCCTCACCACCCA  149
       |||||||||||||||| |||||||  ||||||| |||||||||||||||
seq2  -GTAGCTGAGAAAGGCC-TAAACTC--TGTCCTC-TGTCCTCACCACCCA  134

seq1  AGTGCTGGGATAATACAGCTATGTTTATATTTTTATTGCTTTTATTTCAT  199
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  AGTGCTGGGATAATACAGCTATG-TTATA-TTTTATTGCTTTTATTTCAT  182

seq1  ATGTACATATATTGCTTTAAAATTAAAATTAAAACAAAGTTTTATCTCAT  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGTACATATATTGCTTTAAAATTAAAATT-AAACAAAGTTTTATCTCAT  231

seq1  ACTCCTTCATATCCAATATAGTTCTACTCACTTACTACTTTCCAATTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCATATCCAATATAGTTCTACTCACTTACTACTTTCCAATTTCA  281

seq1  TGGGGTTTTGATTTTTTGTTGTTGTTATTGTTGGTTTGTTTGTTGTTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTTGATTTTTTGTTGTTGTTATTGTTGGTTTGTTTGTTGTTTTT  331

seq1  AATCCATTGGTCCCACTCCATGCTGCCAATATGTGCATGAGTAGCTTGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTGGTCCCACTCCATGCTGCCAATATGTGCATGAGTAGCTTGCC  381

seq1  AGGGGATGCATCCCTGAAGAAAACTGACTCTCCCTCTCTCAATCATCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATGCATCCCTGAAGAAAACTGACTCTCCCTCTCTCAATCATCATC  431

seq1  AGTAACCAATAGCTCCTCAGCTAAAGGTGGGATTTAAACCCCACCATACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCAATAGCTCCTCAGCTAAAGGTGGGATTTAAACCCCACCATACT  481

seq1  TGGATTTTTTCTGACTTAATCTTGCAAATGTATTGTGCATGCTTTCATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTTCTGACTTAATCTTGCAAATGTATTGTGCATGCTTTCATAA  531

seq1  CAGACATGAGTTTGACTATGCAACTGCAGAATCATGTCTCAAAAACATCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGAGTTTGACTATGCAACTGCAGAATCATGTCTCAAAAACATCG  581

seq1  TTTCCCTGTTATCCTCCTCTGCCTCTCTCAAAATGGTCCCTCATCTCTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGTTATCCTCCTCTGCCTCTCTCAAAATGGTCCCTCATCTCTTG  631

seq1  TAGGAAGAAATGTGACACAGATGTCCTGTTTAGGGCTGAGAAGTGCACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAAATGTGACACAGATGTCCTGTTTAGGGCTGAGAAGTGCACTC  681

seq1  TACAGGCTCCTATTCTCTAGTTGTGCGTCCCTGTGTTAATAGTCATTGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCTCCTATTCTCTAGTTGTGCGTCCCTGTGTTAATAGTCATTGAC  731

seq1  TACAAAAAGAAATATCCCAGATGAGAGATGCATTCATCTGGGTTAGCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAGAAATATCCCAGATGAGAGATGCATTCATCTGGGTTAGCCTG  781

seq1  CTCATGCTGCAGCAGAAGTGAAGTCATGATGGGCGTGAGCCTTCCTACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTGCAGCAGAAGTGAAGTCATGATGGGCGTGAGCCTTCCTACTT  831

seq1  CATGCTTGCTTATTATTTGATATATGATTTCCATTTGTATGCTAAAATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGCTTATTATTTGATATATGATTTCCATTTGTATGCTAAAATGT  881

seq1  CCTAAGTTTCTGCCTGTTTCATGTGTTTATTTTTAAATAGACTGAAGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTTTCTGCCTGTTTCATGTGTTTATTTTTAAATAGACTGAAGGCA  931

seq1  ATAATTATACATAGTCTGTCTTTACTGGGCTTTGGTAACTCAGATCATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATACATAGTCTGTCTTTACTGGGCTTTGGTAACTCAGATCATCT  981

seq1  ATTGTCAGGAAATAGTAGATGGAAAGTACAGGGAATAAAGGAAAAATAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGGAAATAGTAGATGGAAAGTACAGGGAATAAAGGAAAAATAAG  1031

seq1  CAACTTATAACAAATCCTTATACTTATCCTACTTTGCTTCAGTTATTATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATAACAAATCCTTATACTTATCCTACTTTGCTTCAGTTATTATT  1081

seq1  GTTAATATTATGCTATACATAATTTATAATTTAAAGTAAGTGTATATGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATTATGCTATACATAATTTATAATTTAAAGTAAGTGTATATGGA  1131

seq1  TGGGAAAGTACATGGTACCATGCAATGTTTCAGGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGTACATGGTACCATGCAATGTTTCAGGAATTC  1170

seq1: chr14_40476349_40477283
seq2: B6Ng01-116F09.g_68_985

seq1  GAATTCAGCTCAGCTCTGATCCAAGCTGACAGGATGAAGTTATAGAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCAGCTCTGATCCAAGCTGACAGGATGAAGTTATAGAAGAG  50

seq1  GAAGTTAGAAGGAAGGATGAATGGGTGTGTCAGTTAAGTTGTGAAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGAAGGAAGGATGAATGGGTGTGTCAGTTAAGTTGTGAAAACAG  100

seq1  AAAATACAAAAGTCCAGTAAAGCAAGCTGATTCTTGGAAATAATTAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAAAGTCCAGTAAAGCAAGCTGATTCTTGGAAATAATTAGGCA  150

seq1  TGGTAGTTTCAGGTCAGGGTGTATTTTTAAAGTTTATTCTAGGTAGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTTCAGGTCAGGGTGTATTTTTAAAGTTTATTCTAGGTAGAGGT  200

seq1  TTTAGAGGGTAGCCAATCCCAGAGAAATCACCTCTGGGAAATCAAGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGGTAGCCAATCCCAGAGAAATCACCTCTGGGAAATCAAGCTGA  250

seq1  TGTTTATCTATTCTCTAGTGATGGGGTCAGATAAAGTAAGTTTTATTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCTATTCTCTAGTGATGGGGTCAGATAAAGTAAGTTTTATTGGT  300

seq1  AATGAACTGGTCTGACAGTCCAAGGTTAGGTCCAGTTGATAGAAAGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTGGTCTGACAGTCCAAGGTTAGGTCCAGTTGATAGAAAGTTCT  350

seq1  AAAGGAGCCTGGCTAAAGTTTGGTTAATTTTACATTGATACATCTTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCCTGGCTAAAGTTTGGTTAATTTTACATTGATACATCTTGAAT  400

seq1  TTAAAATTAAATCAATTTTGAGCTTGTTAAAAAGTATCTGGAATTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTAAATCAATTTTGAGCTTGTTAAAAAGTATCTGGAATTTTAAG  450

seq1  AGTCCAGCTTTTATTGATTATCATAAATTCTGGTTGATGTATCTGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCTTTTATTGATTATCATAAATTCTGGTTGATGTATCTGAAATG  500

seq1  GATTGTGCTCAGCATTGATGGTCATACATGCAAAAGCAGATGTAAGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGCTCAGCATTGATGGTCATACATGCAAAAGCAGATGTAAGGGGC  550

seq1  TGGTATTGAATACTAAAGTGAAGGAAAGAGATTAAGACTGAGAGAGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTGAATACTAAAGTGAAGGAAAGAGATTAAGACTGAGAGAGATTA  600

seq1  GTAAGCATAATATTGACATATCTATGAGGTTGAGTTTCTTGGCAAAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATAATATTGACATATCTATGAGGTTGAGTTTCTTGGCAAAGGAT  650

seq1  AAAGCATAGTTGGAGAAGAGAAAGCTCCTTGGGACAAATCCCGGAAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAGTTGGAGAAGAGAAAGCTCCTTGGGACAAATCCCGGAAGCAT  700

seq1  GCCAACTGGGGAATGCATGCCTTGAATTGATTCTCTAGGCCTGAAGATGT  750
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  GCCAACTGGGGAA-GCATGCGTTGAATTGATTCTCTAGGCCTGAAGATGT  749

seq1  TTTTCTTTTGGCTTTTTTTTTACCTTTTTAATTTCTCAGAAGAGAATTGG  800
      ||||| ||||| ||||||||||||||||||||||||||| |||  |||||
seq2  TTTTC-TTTGGGTTTTTTTTTACCTTTTTAATTTCTCAG-AGA-TATTGG  796

seq1  TGTATGGCTAAAGGAATGTGGAGGGTATTTGATAAACACATTTACCTCAA  850
      ||||||||| |||| |||||||||||||||||||  ||   || |||| |
seq2  TGTATGGCTTAAGG-ATGTGGAGGGTATTTGATAGCCA---TTGCCTC-A  841

seq1  AATATTTTCTCTTGTTTTTCGTATTATCCTTCCCACAAAATAAGTGGCAA  900
      |||| | ||||||| || ||||||||||| ||||||| |   ||| ||||
seq2  AATA-TGTCTCTTG-TTATCGTATTATCC-TCCCACATA--TAGT-GCAA  885

seq1  CCTTATTCATTTTTCTCCATTGTTATTGAATTTGA  935
       ||||||||||||||  || || || |||||||||
seq2  -CTTATTCATTTTTCCTCACTG-TAATGAATTTGA  918