BAC Information

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BAC

Clone NameB6Ng01-117D24
Chromosome14 (Build37)
Map Location 65,603,221 - 65,747,056
singlet/doubletdoublet
Overlap geneD14Ertd231e, Extl3
Upstream gene4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra, Kif13b, Hmbox1, LOC100043657
Downstream geneFzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117D24.bB6Ng01-117D24.g
ACCDH922036DH922037
length1,0921,045
definitionDH922036|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D24, 5' end.DH922037|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,745,947 - 65,747,056)(65,603,221 - 65,604,143)
sequence
gaattcaggtgccccggaggctagaagcattgggtcctcactggtctgga
gttataggctgctgtgcactgtcagatgctggattctggaactaacaaac
tcacatgcttttcaagagcagtaattgctcttaagcaccgagctgtccat
ccagttccgcagacccattttcaagatagcctattagctcattaataagg
aggatttattaatctattcatgaaggcagagccctaatcatctggtccta
cctcttataactcataatggatattgactttcagcttcagttttagagag
aataaactatattcaaaccacagcacccccatcaaccctctccagtaacc
agtgtgcctgtggctatgtgtattcatatagcttatgaatattaaacaca
tacaaatagctcatgttcttcgttttcccttcttgaaaataaacgaaagc
atcctatatttctgcaccttgctgaggctttttggtcacatactatattt
ggagacttttaaaatacctgcacattgaatgcttcttcaagtatttttat
gccttctaagtcttatgttgtatgtgcgcagtacagtgtagttaatcagt
gccctagtcagagggatttgaattctacctaactctcattattcagagca
atgccacaatttaaatatgtggtattccttaatattacagcttaagggta
gattcccaggtgacaagataggcgtcaaaggtgattctcagttggaatgt
tgatccttaagaccaggtttcttccacagagggctatcccagtctacact
tctgttacgatgagtgtttgtctcgtggcccaaggatttgtcactttttt
cccaggcagctattgtcctcccaactgggggcagatgtgtggaaaataag
gacagatatagatcttcctgcttgaatttctccattcataaattatgcca
caccccagagcacataaatattttgtttccagtgtgtatttgggagagca
gcagtcatgcccggagagaggagtctcacatgtggagagagttagcagat
cttcttcccctcctctctcttccctccccctctcaagatatt
gaattcttacctgccctcacctgtgctgcctcatgtgcctgcgctgcagt
caggtccccagcacacagcatcatgttctgcagtgcccgtgcacactgcc
tgtatcacctccaccccagatggctgcacgtcatgaactgcaatcctttg
actatacatataggatttttcattcttatgaaaacataatggttaaatta
cagagaacaaagacttaatattttcctgccacacttagggacaattatga
gattcgtacattagtgaagttagtaaatctgggtgtatctttagattgta
ttttgttagaatatttgattttaaaaattgctatttccagccatacagtg
gtgacacataccgttagtcccagcacttaggaggcagagacaggcagatc
tctgtgagttcaaaaccagcctggtctacagagagaattctaggaagtca
gggctgttacacagagaaacaagtagagtggctcagaggataaaggtact
tgctaccaaagctgatgacctgggtttgatctcaagggcccgcctggtgg
aaagaaagagcccactcctgaaagttacactttgaccacatgaatgccat
gatgcatatgcaacctcctggcatgcacacacacacagaataaacacagt
tacaattttacattgctgtttgagttcctgggttaagtttcataaactgt
tggatgaattctggcttggagtgaggatagaatgcccaacaatttctgaa
atggccctgtttttgtcgtcgttaaatcatacattcatgcccagcgtcat
tctcaacattgatgattacaagatcaaaatgttggtgaactcagaaaaaa
atgtggaaggtatctgcttcctacagagtcagatatttaactaagacaat
aagcatagccatctcattagtaggcaggctttctctgatctttagtagat
ggtagatatatggatgccaaagggtgtttcttatgatatagtaatgttcg
ttctgttctattcaagatttgtttacttatgggtgttgtgtatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_65745947_65747056
seq2: B6Ng01-117D24.b_42_1133 (reverse)

seq1  AATATCTTTGGAGAGGGGGAGGGGGAAGAGAAGAGGGAGGGGGAGGAAGA  50
      ||||||||  ||||||||||  |||||||| |||||   ||||| |||||
seq2  AATATCTT--GAGAGGGGGA--GGGAAGAG-AGAGG--AGGGGAAGAAGA  43

seq1  TTCTGCTTAACTCTCTCCACATGTGAGACTCCTCTCCTCCGGGCATGACT  100
       ||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  -TCTGC-TAACTCTCTCCACATGTGAGACTCCTCT-CTCCGGGCATGACT  90

seq1  GGCTGCTCTCCCAAATTACACACTGGAAACAAAAATATTTATTGTGCTCC  150
       |||||||||||||| |||||||||||||| |||||||||| |||||| |
seq2  -GCTGCTCTCCCAAA-TACACACTGGAAAC-AAAATATTTA-TGTGCT-C  135

seq1  TGGGGTGTGGCATAATTTATGAATGGAGAAAATTCAAGCAGGAAGATCTA  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGGGTGTGGCATAATTTATGAATGGAG-AAATTCAAGCAGGAAGATCTA  184

seq1  TATCTTGTCCTTATTTTCCACACATCTGCCCCCAGTTGGGAGGACAATAG  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATC-TGTCCTTATTTTCCACACATCTGCCCCCAGTTGGGAGGACAATAG  233

seq1  CTGCCTGGGAAAAAAGTGACAAATCCTTGGGCCACGAGACAAACACTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGGAAAAAAGTGACAAATCCTTGGGCCACGAGACAAACACTCAT  283

seq1  CGTAACAGAAGTGTAGACTGGGATAGCCCTCTGTGGAAGAAACCTGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACAGAAGTGTAGACTGGGATAGCCCTCTGTGGAAGAAACCTGGTCT  333

seq1  TAAGGATCAACATTCCAACTGAGAATCACCTTTGACGCCTATCTTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATCAACATTCCAACTGAGAATCACCTTTGACGCCTATCTTGTCAC  383

seq1  CTGGGAATCTACCCTTAAGCTGTAATATTTAAGGAATACCACATATTTAA  450
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGGGAATCTACCCTTAAGCTGTAATA-TTAAGGAATACCACATATTTAA  432

seq1  ATTGTGGCATTGCTCTGAATAATGAGAGTTAGGTAGAATTCAAATCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCATTGCTCTGAATAATGAGAGTTAGGTAGAATTCAAATCCCTC  482

seq1  TGACTAGGGCACTGATTAACTACACTGTACTGCGCACATACAACATAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGGGCACTGATTAACTACACTGTACTGCGCACATACAACATAAGA  532

seq1  CTTAGAAGGCATAAAAATACTTGAAGAAGCATTCAATGTGCAGGTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGGCATAAAAATACTTGAAGAAGCATTCAATGTGCAGGTATTTT  582

seq1  AAAAGTCTCCAAATATAGTATGTGACCAAAAAGCCTCAGCAAGGTGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTCCAAATATAGTATGTGACCAAAAAGCCTCAGCAAGGTGCAGA  632

seq1  AATATAGGATGCTTTCGTTTATTTTCAAGAAGGGAAAACGAAGAACATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGGATGCTTTCGTTTATTTTCAAGAAGGGAAAACGAAGAACATGA  682

seq1  GCTATTTGTATGTGTTTAATATTCATAAGCTATATGAATACACATAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGTATGTGTTTAATATTCATAAGCTATATGAATACACATAGCCA  732

seq1  CAGGCACACTGGTTACTGGAGAGGGTTGATGGGGGTGCTGTGGTTTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACACTGGTTACTGGAGAGGGTTGATGGGGGTGCTGTGGTTTGAAT  782

seq1  ATAGTTTATTCTCTCTAAAACTGAAGCTGAAAGTCAATATCCATTATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTATTCTCTCTAAAACTGAAGCTGAAAGTCAATATCCATTATGAG  832

seq1  TTATAAGAGGTAGGACCAGATGATTAGGGCTCTGCCTTCATGAATAGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAGGTAGGACCAGATGATTAGGGCTCTGCCTTCATGAATAGATT  882

seq1  AATAAATCCTCCTTATTAATGAGCTAATAGGCTATCTTGAAAATGGGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCCTCCTTATTAATGAGCTAATAGGCTATCTTGAAAATGGGTCT  932

seq1  GCGGAACTGGATGGACAGCTCGGTGCTTAAGAGCAATTACTGCTCTTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAACTGGATGGACAGCTCGGTGCTTAAGAGCAATTACTGCTCTTGAA  982

seq1  AAGCATGTGAGTTTGTTAGTTCCAGAATCCAGCATCTGACAGTGCACAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTGAGTTTGTTAGTTCCAGAATCCAGCATCTGACAGTGCACAGC  1032

seq1  AGCCTATAACTCCAGACCAGTGAGGACCCAATGCTTCTAGCCTCCGGGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATAACTCCAGACCAGTGAGGACCCAATGCTTCTAGCCTCCGGGGC  1082

seq1  ACCTGAATTC  1110
      ||||||||||
seq2  ACCTGAATTC  1092

seq1: chr14_65603221_65604143
seq2: B6Ng01-117D24.g_203_1109

seq1  TGCAATCCTTTGACTATACATATAGGATTTTTCATTCTTATGAAAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCCTTTGACTATACATATAGGATTTTTCATTCTTATGAAAACATA  50

seq1  ATGGTTAAATTACAGAGAACAAAGACTTAATATTTTCCTGCCACACTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAAATTACAGAGAACAAAGACTTAATATTTTCCTGCCACACTTAG  100

seq1  GGACAATTATGAGATTCGTACATTAGTGAAGTTAGTAAATCTGGGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTATGAGATTCGTACATTAGTGAAGTTAGTAAATCTGGGTGTAT  150

seq1  CTTTAGATTGTATTTTGTTAGAATATTTGATTTTAAAAATTGCTATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGATTGTATTTTGTTAGAATATTTGATTTTAAAAATTGCTATTTCC  200

seq1  AGCCATACAGTGGTGACACATACCGTTAGTCCCAGCACTTAGGAGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACAGTGGTGACACATACCGTTAGTCCCAGCACTTAGGAGGCAGA  250

seq1  GACAGGCAGATCTCTGTGAGTTCAAAACCAGCCTGGTCTACAGAGAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGATCTCTGTGAGTTCAAAACCAGCCTGGTCTACAGAGAGAAT  300

seq1  TCTAGGAAGTCAGGGCTGTTACACAGAGAAACAAGTAGAGTGGCTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAAGTCAGGGCTGTTACACAGAGAAACAAGTAGAGTGGCTCAGAG  350

seq1  GATAAAGGTACTTGCTACCAAAGCTGATGACCTGGGTTTGATCTCAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGTACTTGCTACCAAAGCTGATGACCTGGGTTTGATCTCAAGGG  400

seq1  CCCGCCTGGTGGAAAGAAAGAGCCCACTCCTGAAAGTTACACTTTGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTGGTGGAAAGAAAGAGCCCACTCCTGAAAGTTACACTTTGACCA  450

seq1  CATGAATGCCATGATGCATATGCAACCTCCTGGCATGCACACACACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGCCATGATGCATATGCAACCTCCTGGCATGCACACACACACAG  500

seq1  AATAAACACAGTTACAATTTTACATTGCTGTTTGAGTTCCTGGGTTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACAGTTACAATTTTACATTGCTGTTTGAGTTCCTGGGTTAAGT  550

seq1  TTCATAAACTGTTGGATGAATTCTGGCTTGGAGTGAGGATAGAATGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAACTGTTGGATGAATTCTGGCTTGGAGTGAGGATAGAATGCCCA  600

seq1  ACAATTTCTGAAATGGCCCTGTTTTTGTCGTCGTTAAATCATACATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCTGAAATGGCCCTGTTTTTGTCGTCGTTAAATCATACATTCAT  650

seq1  GCCCAGCGTCATTCTCAACATTGATGATTACAAGATCAAAATGTTGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCGTCATTCTCAACATTGATGATTACAAGATCAAAATGTTGGTGA  700

seq1  ACTCAGAAAAAAATGTGGAAGGTATCTGCTTCCTACAGAGTCAGATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAAAAAATGTGGAAGGTATCTGCTTCCTACAGAGTCAGATATTT  750

seq1  AACTAAGACAAATAAGCATAGCCATCTCATTAGTAGGCAGGCTTTCTCTG  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGAC-AATAAGCATAGCCATCTCATTAGTAGGCAGGCTTTCTCTG  799

seq1  ATCTTTAGTAGATGGTAAGATTATATGGATGCCAAAGGGTTGTTTCTTTA  850
      |||||||||||||||| ||| |||||||||||||||||| |||||| |||
seq2  ATCTTTAGTAGATGGT-AGA-TATATGGATGCCAAAGGG-TGTTTC-TTA  845

seq1  TGATTATTAGTAAATGTTCGGTTTCTGTTCTTAATTTCAAAGATTTGTTT  900
      ||||   |||| ||||||||  |||||||||  |||   |||||||||||
seq2  TGAT--ATAGT-AATGTTCG--TTCTGTTCT--ATT--CAAGATTTGTTT  886

seq1  ACTTTATTGTGTGTTGTGTATGT  923
      ||||   || |||||||||||||
seq2  ACTT--ATGGGTGTTGTGTATGT  907