BAC Information

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BAC

Clone NameB6Ng01-117E16
Chromosome14 (Build37)
Map Location 96,555,379 - 96,724,084
singlet/doubletdoublet
Overlap geneKlhl1
Upstream geneLOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117E16.bB6Ng01-117E16.g
ACCDH922068DH922069
length1,1391,121
definitionDH922068|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E16, 5' end.DH922069|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,722,936 - 96,724,084)(96,555,379 - 96,556,519)
sequence
gaattctaaataaactgatctatctatctatctatctatctatctatcca
tctatctatataaaagcatgtaataatttataatttacaatttttgtcaa
caatgaatttctcacatcacaaagtgtgcgatatttttatccttcacact
ctgtggcatgactgaactctaaatctttcaaaaatgattcttagtacttt
taatatgtgtgtgtactcgtgacccaccataatcatcctagcagactcct
ccagtgatacggtcttctttttgtttacgtactaatctgtgctttctctc
tttgttagacgatcttatgttatatagttctcactaggctggaagttgta
ttcaaattcatagtagttgtcctgactgaccctctcacattctgtgacca
tcccagcctcctgtactcttttggtatgccctaagtcacatgacttcaat
gattttttttacaaactaaacctcaatctgaggtttcatgtctgatcttg
agtttgtttcttggtgtctctctatagtgaaaattgatagaatataccac
atttattcattaatcatactttttaaatttttcagtggatgcctgacatg
gccaaatgttcatttgtgtacttttttctagcagcatagcttcatgctac
caaaactccaatttccctttcttgcaataatccctgttagactataaggg
gaggaggtattattagtaaacaaagcaattctttgaaaaaaaaagcctca
tgatacagtgatagtatttctggtatccaaggtggctcctaacttgctat
aaaattctgccttccatttccatgaaaagcttgagccaggaagtacttaa
tttgcttcaaaatttaaaatgtttcaagtcatggtcaactgctgctattg
atttagcctgagatgaggcaaaacaacagcaacaggaccttgtgtccctt
aaatccagttcacttaaattcctgcttcaatcacagagactgagttcagg
acatctgtatccacataaaatatcatataacccacacaagagttgccgag
aagaatcctatgctggctgctctcctctacctgagggattagatccagtc
tcaagaagagatttatgtctcaatgaagagtatagagga
gaattcatgccaggcagtggtggcacacacccttaatcccagcacttggg
aggcagaggcaggtggatttctgagttcgaggccagcctggtctacaaag
tgagttccaggtcagccagggctatacagagaaaccctatctcaaaaaac
caaaaaaaaaaaaaaaaaaaagaattcataaaagaatatgtatatttgaa
cttcatagaacatatataatttcatgataaattgtgtaaactgaggacat
caccactctgatttaaggttcagggaaagatttttattgtagatataagg
gacagtacagacaggggcatttggaagagtccagatcagagagatagaat
agtacactgaacatggctagcagatagcacttggccatgaaaagagaggc
taggtgaaaacagaagagagacaaagcaaaggagaacaagagagaagggt
gagagagaagaggctaaattaggaagacaaaggagatcaattgggcaaaa
ggcaaacttgtataggaataggtagctcaaggagggaagtcactgaggta
gagaaggttagagtagtggccattgggaaaataactgagaaaagccacag
gtggccctgatactgacagggaatgcaggccaggatgagccttggtatac
aagtaggcaccacagacagccattcaccttccatcttgatgagaaaatgg
gtcttttggtagaaggcaaatcccctgaaaagagaggagcttcctttagc
cctgacaacaactaagagaataagtaggttaatcaaataatatacctttt
ctcctctccctctccattggttcatctcttaaagaatgtctccatcaact
ccctccctctgagagttcagagaactctgcagaagaggatgtaggaattg
tgtcctttgtgtacatactattgcttccagcttgtgttttcatctacact
tcagagagtgaatgagaagttagtgtgtctctgcatgtgcatctgctgca
tgtaccttctttagagtcatgttctttcttttttacttttgctaatctca
attggtagttttgtttttatatttattttaagctatcccatagaatctcc
tttgtttctagggaaagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96722936_96724084
seq2: B6Ng01-117E16.b_46_1184 (reverse)

seq1  TCCTCTATTACTCTTCAATTTGAGACATAAATCTCTCTTTGAGACTGGAT  50
      ||||||| |||||||||  |||||||||||||||||  ||||||||||||
seq2  TCCTCTA-TACTCTTCA--TTGAGACATAAATCTCTTCTTGAGACTGGAT  47

seq1  CTTAATCACTCAGGTAGAGGAGAGCCAGCCAGCATAGGGATTTCTTCTCG  100
      | ||||| |||||||||||||||| |||||||||||||   |||||||||
seq2  C-TAATCCCTCAGGTAGAGGAGAG-CAGCCAGCATAGG--ATTCTTCTCG  93

seq1  GCAACTCTTGTGTTGGGTTATATGATATTTTATGTGGATACAGATGTCCT  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTTGTG-TGGGTTATATGATATTTTATGTGGATACAGATGTCCT  142

seq1  GAACTCAGTTCTCTGTGATTGAAGCAGGAATTTAAGTGAACTGGATTTAA  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAG-TCTCTGTGATTGAAGCAGGAATTTAAGTGAACTGGATTTAA  191

seq1  GGGACACAAGGTCCTGTTGCTGTTGTTTTGCCTCATCTCAGGCTAAAATC  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGACACAAGGTCCTGTTGCTGTTGTTTTGCCTCATCTCAGGCT-AAATC  240

seq1  AATAGCAGCAGTTGACCATGACTTGAAACATTTTAAATTTTGAAGCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGCAGTTGACCATGACTTGAAACATTTTAAATTTTGAAGCAAAT  290

seq1  TAAGTACTTCCTGGCTCAAGCTTTTCATGGAAATGGAAGGCAGAATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACTTCCTGGCTCAAGCTTTTCATGGAAATGGAAGGCAGAATTTTA  340

seq1  TAGCAAGTTAGGAGCCACCTTGGATACCAGAAATACTATCACTGTATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGTTAGGAGCCACCTTGGATACCAGAAATACTATCACTGTATCAT  390

seq1  GAGGCTTTTTTTTTCAAAGAATTGCTTTGTTTACTAATAATACCTCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTTTTTTTCAAAGAATTGCTTTGTTTACTAATAATACCTCCTCC  440

seq1  CCTTATAGTCTAACAGGGATTATTGCAAGAAAGGGAAATTGGAGTTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAGTCTAACAGGGATTATTGCAAGAAAGGGAAATTGGAGTTTTGG  490

seq1  TAGCATGAAGCTATGCTGCTAGAAAAAAGTACACAAATGAACATTTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGAAGCTATGCTGCTAGAAAAAAGTACACAAATGAACATTTGGCC  540

seq1  ATGTCAGGCATCCACTGAAAAATTTAAAAAGTATGATTAATGAATAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGCATCCACTGAAAAATTTAAAAAGTATGATTAATGAATAAATG  590

seq1  TGGTATATTCTATCAATTTTCACTATAGAGAGACACCAAGAAACAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATTCTATCAATTTTCACTATAGAGAGACACCAAGAAACAAACTC  640

seq1  AAGATCAGACATGAAACCTCAGATTGAGGTTTAGTTTGTAAAAAAAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGACATGAAACCTCAGATTGAGGTTTAGTTTGTAAAAAAAATCA  690

seq1  TTGAAGTCATGTGACTTAGGGCATACCAAAAGAGTACAGGAGGCTGGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTCATGTGACTTAGGGCATACCAAAAGAGTACAGGAGGCTGGGAT  740

seq1  GGTCACAGAATGTGAGAGGGTCAGTCAGGACAACTACTATGAATTTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGAATGTGAGAGGGTCAGTCAGGACAACTACTATGAATTTGAAT  790

seq1  ACAACTTCCAGCCTAGTGAGAACTATATAACATAAGATCGTCTAACAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTCCAGCCTAGTGAGAACTATATAACATAAGATCGTCTAACAAAG  840

seq1  AGAGAAAGCACAGATTAGTACGTAAACAAAAAGAAGACCGTATCACTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCACAGATTAGTACGTAAACAAAAAGAAGACCGTATCACTGGA  890

seq1  GGAGTCTGCTAGGATGATTATGGTGGGTCACGAGTACACACACATATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGCTAGGATGATTATGGTGGGTCACGAGTACACACACATATTAA  940

seq1  AAGTACTAAGAATCATTTTTGAAAGATTTAGAGTTCAGTCATGCCACAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTAAGAATCATTTTTGAAAGATTTAGAGTTCAGTCATGCCACAGA  990

seq1  GTGTGAAGGATAAAAATATCGCACACTTTGTGATGTGAGAAATTCATTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGGATAAAAATATCGCACACTTTGTGATGTGAGAAATTCATTGT  1040

seq1  TGACAAAAATTGTAAATTATAAATTATTACATGCTTTTATATAGATAGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAATTGTAAATTATAAATTATTACATGCTTTTATATAGATAGAT  1090

seq1  GGATAGATAGATAGATAGATAGATAGATAGATCAGTTTATTTAGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGATAGATAGATAGATAGATAGATAGATCAGTTTATTTAGAATTC  1139

seq1: chr14_96555379_96556519
seq2: B6Ng01-117E16.g_67_1187

seq1  GAATTCATGCCAGGCAGTGGTGGCACACACCCTTAATCCCAGCACTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCAGGCAGTGGTGGCACACACCCTTAATCCCAGCACTTGGG  50

seq1  AGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAG  100

seq1  TGAGTTCCAGGTCAGCCAGGGCTATACAGAGAAACCCTATCTCAAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGTCAGCCAGGGCTATACAGAGAAACCCTATCTCAAAAAAC  150

seq1  CAAAAAAAAAAAAAAAAAAAAGAATTCATAAAAGAATATGTATATTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAAAAGAATTCATAAAAGAATATGTATATTTGAA  200

seq1  CTTCATAGAACATATATAATTTCATGATAAATTGTGTAAACTGAGGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGAACATATATAATTTCATGATAAATTGTGTAAACTGAGGACAT  250

seq1  CACCACTCTGATTTAAGGTTCAGGGAAAGATTTTTATTGTAGATATAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCTGATTTAAGGTTCAGGGAAAGATTTTTATTGTAGATATAAGG  300

seq1  GACAGTACAGACAGGGGCATTTGGAAGAGTCCAGATCAGAGAGATAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTACAGACAGGGGCATTTGGAAGAGTCCAGATCAGAGAGATAGAAT  350

seq1  AGTACACTGAACATGGCTAGCAGATAGCACTTGGCCATGAAAAGAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTGAACATGGCTAGCAGATAGCACTTGGCCATGAAAAGAGAGGC  400

seq1  TAGGTGAAAACAGAAGAGAGACAAAGCAAAGGAGAACAAGAGAGAAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAAAACAGAAGAGAGACAAAGCAAAGGAGAACAAGAGAGAAGGGT  450

seq1  GAGAGAGAAGAGGCTAAATTAGGAAGACAAAGGAGATCAATTGGGCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAGAGGCTAAATTAGGAAGACAAAGGAGATCAATTGGGCAAAA  500

seq1  GGCAAACTTGTATAGGAATAGGTAGCTCAAGGAGGGAAGTCACTGAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACTTGTATAGGAATAGGTAGCTCAAGGAGGGAAGTCACTGAGGTA  550

seq1  GAGAAGGTTAGAGTAGTGGCCATTGGGAAAATAACTGAGAAAAGCCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTTAGAGTAGTGGCCATTGGGAAAATAACTGAGAAAAGCCACAG  600

seq1  GTGGCCCTGATACTGACAGGGAATGCAGGCCAGGATGAGCCTTGGTATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTGATACTGACAGGGAATGCAGGCCAGGATGAGCCTTGGTATAC  650

seq1  AAGTAGGCACCACAGACAGCCATTCACCTTCCATCTTGATGAGAAAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGCACCACAGACAGCCATTCACCTTCCATCTTGATGAGAAAATGG  700

seq1  GTCTTTTGGTAGAAGGCAAATCCCCTGAAAAGAGAGGAGCTTCCTTTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGGTAGAAGGCAAATCCCCTGAAAAGAGAGGAGCTTCCTTTAGC  750

seq1  CCTGACAACAACTAAGAGAATAAGTAGGTTAATCAAATAATATACCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAACAACTAAGAGAATAAGTAGGTTAATCAAATAATATACCTTTT  800

seq1  CTCCTCTCCCTCTCCATTGGTTCATCTCTTAAAGAATGTCTCCATCAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCCCTCTCCATTGGTTCATCTCTTAAAGAATGTCTCCATCAACT  850

seq1  CCCTCCCTCTGAGAGTTCAGAGAACTCTGCAGAAGAGGATGTAGGAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCTGAGAGTTCAGAGAACTCTGCAGAAGAGGATGTAGGAATTG  900

seq1  TGTCCTTTGTGTACATACTATTGCTTCCAGCTTGTGTTTTCATCTAACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTCCTTTGTGTACATACTATTGCTTCCAGCTTGTGTTTTCATCT-ACAC  949

seq1  TTCAGAGAGTGAATGAG-AGTTAGTGTGTCTCTGCATGTGCATCTGCTGC  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCAGAGAGTGAATGAGAAGTTAGTGTGTCTCTGCATGTGCATCTGCTGC  999

seq1  ATGTACCTTCTTTAGAGTCATGTTCTTTCTTTTATTTACTTTTTGTCTAA  1049
      ||||||||||||||||||||||||||||||||  |||||||||   ||||
seq2  ATGTACCTTCTTTAGAGTCATGTTCTTTCTTT--TTTACTTTT--GCTAA  1045

seq1  TCTCAATGTGTTAGTTTTTGTTTTATATTATATTTTATTTTATGTTATCC  1099
      ||||||| || |||||||  |||||||      ||||||||| | |||||
seq2  TCTCAAT-TGGTAGTTTTGTTTTTATA------TTTATTTTAAGCTATCC  1088

seq1  CATAGAATCTTCTTTGTTTTCTAGTGAGAGGAAGAAAGAAGA  1141
      |||||||||| ||||| |||||||         |||||||||
seq2  CATAGAATCTCCTTTG-TTTCTAG--------GGAAAGAAGA  1121