BAC Information

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BAC

Clone NameB6Ng01-117G17
Chromosome14 (Build37)
Map Location 69,437,795 - 69,438,871
singlet/doubletsinglet
Overlap genenone
Upstream geneDock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
Downstream geneStc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117G17.bB6Ng01-117G17.g
ACCDH922164DH922165
length1,2741,077
definitionDH922164|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G17, 5' end.DH922165|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgggtcacattgtagcttgtatctttactattttgagggatttc
ctgggcatctttcagtttcctgcagcattattaccagccagcagtagata
tgttttctgtttttatccatgcactcgacaattctggccatgctgtgtct
ttagtaatagttttcctgtggacatgaagtgatcatgttttatggctctg
aaatttgtctaattgttgattttgttgtattgaacagttttatcttttca
tgtgcctacaccatttttacattttctttggagtcatgtctgttcagatc
cctttcttaactttgtggcttagtttgtctgtctattattgactactaag
actttatattatgtattctcagtataaatctattacacattctcttatcc
aatagttttttctttcttctttcttctcccttcctttcccttccctccca
tcttcctctacttccctctcctcccccttcgtttcattttccatctcctg
ttctccttcccttcttccttcctttctttcttctgtagactggcctcaag
accattgcaatccttgtgcctcagcagcaccacgcctgacttctttctag
atggcacaagagctttgatttttgataaagttaaatccctccatttttct
cttatttgtgcttcagggtcataacctctaagaaacagttgttatattca
agaccacaaaggtccactcttaaactttatctaaaggattttacaagtcg
tttcctacatttgggtccatggtcccctttgagctcctttgactgaatgc
tgttgggcagatggttacccttcatcccttttgcctttagacatcatcat
gattattgaacagacttatttcctttttgaatggtcttgttactcttgtt
gaaatcaatccaaactgtttctgactcttaagagtttctgcatctctatg
tttcagaacacttgattactttctgccagcagccagtgggatttcagtag
tactgtagtgatggtcacaccagtcttagacgttgccatcttagcacagc
tggccttctgactacaaatgtgggcttctttctgctgatcagggtatctt
ccagatttgtttcctatccttggatcaatctttagatcctcgctccacta
ttttgtcaaccatttcaggtttatctctaccgtctggctgtccatcgtcg
tcaccatcttcatgtattttcgggtacaccaccggacgtgtctatcctca
gattatatatctcgagactcacta
gaattcactattcattcccttagctacagactacctcatacttacacttt
aggttttagttcaaatgttaagagcacaaagaagtgtctttattgaaaag
actttgtttagtgtattaatagtaactaatacttattgctggctatagct
ctatattaactcatatgaacatctgttaattaactgtttcccactcttaa
gtgaatcaaggggaatcagagactctgttttactaaatggtaggctattt
agatatctttcataagtggataacttattaaacatctatgagatttagta
cgctgcaaggaattagcccacagacaatcaatgatattcttcatgtcaaa
caatccttgaaaacagttgctttcacccagtctcccaagcccgctgggcc
aagggcacagtgggatttgtggtgacttatacaaactgggctcagatgta
ccaggttcctggtgtccttgactctatgtgcaaataatccacacattttc
ttattaaaaaggaaaagagcatctaaggtattttattctgagtatttgtt
cagggaagagaagtttacacagcttgtggagaattattcagcaggaaatt
aaatctccataattctgaattttcacttcactttcaactggcacggcttc
ctggcacagcactctccccgagaacattcataataccacatccgccaccg
aaatatgagttccgagccaaatcacaaagcaggttgacaagaagcttccc
gggaggtctcagataggtgatatgtcaaccgtgaacagaccacaagagca
gatagatacaggccgtgattagtatctaagtttttttttttttacagtaa
cttgaagattacaaactactacataacaaattaacaaagaaaactgtttt
gtacaatccttgtgaatatatgccctgatttctgccttgccacaaattta
taaaactaatctggagtttcactttaattttgttattcatttatttgtgt
ctatatacatgtgtatgcatgcccgtgtgtgcatgtgtgtgaaaaaaaga
agagtgtgtggtgctatgtggtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_69437795_69438871
seq2: B6Ng01-117G17.g_68_1143

seq1  GAATTCACTATTCATTCCCTTAGCTACAGACTACCTCATACTTACACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTCATTCCCTTAGCTACAGACTACCTCATACTTACACTTT  50

seq1  AGGTTTTAGTTCAAATGTTAAGAGCACAAAGAAGTGTCTTTATTGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTAGTTCAAATGTTAAGAGCACAAAGAAGTGTCTTTATTGAAAAG  100

seq1  ACTTTGTTTAGTGTATTAATAGTAACTAATACTTATTGCTGGCTATAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTAGTGTATTAATAGTAACTAATACTTATTGCTGGCTATAGCT  150

seq1  CTATATTAACTCATATGAACATCTGTTAATTAACTGTTTCCCACTCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTAACTCATATGAACATCTGTTAATTAACTGTTTCCCACTCTTAA  200

seq1  GTGAATCAAGGGGAATCAGAGACTCTGTTTTACTAAATGGTAGGCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCAAGGGGAATCAGAGACTCTGTTTTACTAAATGGTAGGCTATTT  250

seq1  AGATATCTTTCATAAGTGGATAACTTATTAAACATCTATGAGATTTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCTTTCATAAGTGGATAACTTATTAAACATCTATGAGATTTAGTA  300

seq1  CGCTGCAAGGAATTAGCCCACAGACAATCAATGATATTCTTCATGTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCAAGGAATTAGCCCACAGACAATCAATGATATTCTTCATGTCAAA  350

seq1  CAATCCTTGAAAACAGTTGCTTTCACCCAGTCTCCCAAGCCCGCTGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTTGAAAACAGTTGCTTTCACCCAGTCTCCCAAGCCCGCTGGGCC  400

seq1  AAGGGCACAGTGGGATTTGTGGTGACTTATACAAACTGGGCTCAGATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACAGTGGGATTTGTGGTGACTTATACAAACTGGGCTCAGATGTA  450

seq1  CCAGGTTCCTGGTGTCCTTGACTCTATGTGCAAATAATCCACACATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCCTGGTGTCCTTGACTCTATGTGCAAATAATCCACACATTTTC  500

seq1  TTATTAAAAAGGAAAAGAGCATCTAAGGTATTTTATTCTGAGTATTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAAGGAAAAGAGCATCTAAGGTATTTTATTCTGAGTATTTGTT  550

seq1  CAGGGAAGAGAAGTTTACACAGCTTGTGGAGAATTATTCAGCAGGAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGAGAAGTTTACACAGCTTGTGGAGAATTATTCAGCAGGAAATT  600

seq1  AAATCTCCATAATTCTGAATTTTCACTTCACTTTCAACTGGCACGGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCATAATTCTGAATTTTCACTTCACTTTCAACTGGCACGGCTTC  650

seq1  CTGGCACAGCACTCTCCCCGAGAACATTCATAATACCACATCCGCCACCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACAGCACTCTCCCCGAGAACATTCATAATACCACATCCGCCACCG  700

seq1  AAATATGAGTTCCGAGCCAAATCACAAAGCAGGTTGACAAGAAGCTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAGTTCCGAGCCAAATCACAAAGCAGGTTGACAAGAAGCTTCCC  750

seq1  GGGAGGTCTCAGATAGGTGATATGTCAACCGTGAACAGACCACAAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTCTCAGATAGGTGATATGTCAACCGTGAACAGACCACAAGAGCA  800

seq1  GATAGATACAGGCCGTGATTAGTATCTAAG-TTTTTTTTTTTTACAGTAA  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATAGATACAGGCCGTGATTAGTATCTAAGTTTTTTTTTTTTTACAGTAA  850

seq1  CTTGAAGATTACAAACTACTACATAACAAATTAACAAAGAAAACTGTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGATTACAAACTACTACATAACAAATTAACAAAGAAAACTGTTTT  900

seq1  GTACAATCCTTGTGAATATATGCCCTGATTTCTGCCTTGCCACAAATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATCCTTGTGAATATATGCCCTGATTTCTGCCTTGCCACAAATTTA  950

seq1  TAAAACTAATCTGGAGTTTCAACTTTTAATTTTTGTTATTCATTTATTTG  999
      |||||||||||||||||||| |||||  | ||||||||||||||||||||
seq2  TAAAACTAATCTGGAGTTTC-ACTTT--AATTTTGTTATTCATTTATTTG  997

seq1  TTGTCTATATACATGTGTATGCATGCGCGTGTGTGCATGTGTGTGAGAGA  1049
       ||||||||||||||||||||||||| ||||||||||||||||||| | |
seq2  -TGTCTATATACATGTGTATGCATGCCCGTGTGTGCATGTGTGTGAAAAA  1046

seq1  GAG-AGAGTGTGT-GTG-TATGTGTGTGTGT  1077
       || ||||||||| ||| |||||| ||||||
seq2  AAGAAGAGTGTGTGGTGCTATGTG-GTGTGT  1076