BAC Information

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BAC

Clone NameB6Ng01-117K11
Chromosome14 (Build37)
Map Location 6,601,538 - 6,700,745
singlet/doubletdoublet
Overlap geneLOC100041442, LOC100041848, LOC100041456, LOC100041758
Upstream geneLOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438
Downstream geneLOC100041470, LOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117K11.bB6Ng01-117K11.g
ACCDH922339DH922340
length1,126378
definitionDH922339|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K11, 5' end.DH922340|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,601,538 - 6,602,327)(6,700,359 - 6,700,745)
sequence
gaattccttgatccacttagatatgaccttagtacaaggagataggaatg
gatgaattcccattcttctacatgttacccgccagtagtgccagcaccat
tttttgaaaatgctgccttttctccactggatggttttagctcccttgtc
aaggatcaaatgaccataggtgtgtgggttcatttctgtgtattcaattc
tattccattggtctacttgtctatcgttataccaagaccatgcaattttg
gatcacaattgctctgtagtacagctttaggtcaggctaccaacaacaat
tttttaaaaaaccttctgggggctggaattacaagcttgtaccaaatctg
gtcaacttttgtatgtatttccaccagaggttcttttatcctggagaaca
gtttttgctatcctaggttttttgtaattccagatgaatttgcagattgc
cctttctaattcattgaagaattgagttggaattttgatgaagattgcat
tgaatctgtagattgcatttgacaagatagccatttttactatatttatc
ctgccaatccatgagcatagatgtcctttccatcttctgagatcttcttt
aatatctttcttcagagacttgaagttcatatcatacagatcttttactt
ccttagttagagtaacacgaaggtattttctattggcttttactcttgtg
aacagtgttgtttccgtaatttctttctcagcccatttcaaaagaccaag
tcagaatcagtgtcaatctctttctccctccagatcaggatgttagtaag
ttcttagctgttgctctagcactaggcctgcctgtctgggggccatactt
ccaaacatgatgaccatggactctatgaaactctaagcaagccctcagat
aaaagtttcattgtatgttaccttgttatagtatttcatcacagcaatac
acagtgactaccacaggcagtaaagaattctccagcttacagtatagacc
atcatgaactgagtcagtgcagactccatggtgagccctgcttacagctt
gtctcatgcttcttcagctgcttcttaaccacagaccacctgcaggcacc
atctgcagtggctatcctaccaatca
caggtgagtgacactgcaccttgtttctatgcaatactgggaactaaatc
cagagcttcatgcatgctagcaaagcagtctaccagtgagctgcctcccc
agcccaaactgttctgcactgttcactgcctgccaaacaggggaatgacc
ccggggatcttcaatgggaattaaagtgagtgggcttgttctaatgataa
tattcacattgcaagtatttaataactatgcagtctctcatggaaagata
tttgtgtgtgtgtgcgcacgcgcgtgcacatcacaagcacatattcgatg
aggtcatggtcagctgtcttcctcttcctcctcctcctcctcctccacct
cctcctcctcctcctcctcctcctcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_6601538_6602327
seq2: B6Ng01-117K11.b_408_1170

seq1  TGTATTTCCACCAGAGGTTCTTTTATCCTGGAGAACAGTTTTTGCTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCCACCAGAGGTTCTTTTATCCTGGAGAACAGTTTTTGCTATCC  50

seq1  TAGGTTTTTTGTAATTCCAGATGAATTTGCAGATTGCCCTTTCTAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTTTGTAATTCCAGATGAATTTGCAGATTGCCCTTTCTAATTCA  100

seq1  TTGAAGAATTGAGTTGGAATTTTGATGAAGATTGCATTGAATCTGTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAATTGAGTTGGAATTTTGATGAAGATTGCATTGAATCTGTAGAT  150

seq1  TGCATTTGACAAGATAGCCATTTTTACTATATTGATCCTGCTAATCCATG  200
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TGCATTTGACAAGATAGCCATTTTTACTATATTTATCCTGCCAATCCATG  200

seq1  AGCATAGAAGACCTTTCCATCTTCTGAGATCTTCTTTAATATCTTTCTTC  250
      |||||||| | |||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGATGTCCTTTCCATCTTCTGAGATCTTCTTTAATATCTTTCTTC  250

seq1  AGAGACTTGAAGTTCATATCATACAGATCTTTTACTTCCTTAGTTAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTGAAGTTCATATCATACAGATCTTTTACTTCCTTAGTTAGAGT  300

seq1  AACACGAAGGTATTTTCTATTGGTTTTTACTCTTGTGAACAGTGTTGTTT  350
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACACGAAGGTATTTTCTATTGGCTTTTACTCTTGTGAACAGTGTTGTTT  350

seq1  CCGTAAGTTCTTTCTCAGCCCATTTCAAAAGACCAAGTCAGAATCAGTGT  400
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAATTTCTTTCTCAGCCCATTTCAAAAGACCAAGTCAGAATCAGTGT  400

seq1  CAATCTCTTTCTCCCTCCAGATCAGGATGTTAGTAAGCTCTTAGCTGTTG  450
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAATCTCTTTCTCCCTCCAGATCAGGATGTTAGTAAGTTCTTAGCTGTTG  450

seq1  CTCTAGCACTAGGCCTGCCTGTCTGGGGGCCATACTTCCAAACATGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCACTAGGCCTGCCTGTCTGGGGGCCATACTTCCAAACATGATGA  500

seq1  CCATGGACTCTATGAAACTCTAAGCAAGCCCTCAGATAAAAGCTTCATTG  550
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCATGGACTCTATGAAACTCTAAGCAAGCCCTCAGATAAAAGTTTCATTG  550

seq1  TATGTTACCTTGTTTATAGTATTTCATCACAGCAATAGAACAGTGACTAC  600
      |||||||||||| ||||||||||||||||||||||||  |||||||||||
seq2  TATGTTACCTTG-TTATAGTATTTCATCACAGCAATA-CACAGTGACTAC  598

seq1  CACAGGCAGTAAAGAATTTCTCCCAGCTTACAGTTATAGACCATCATGAA  650
      |||||||||||||||| |||| ||||||||||| ||||||||||||||||
seq2  CACAGGCAGTAAAGAA-TTCT-CCAGCTTACAG-TATAGACCATCATGAA  645

seq1  CTGAAGTCAGTGCAGGACGCCATGGTGGAGCCCTGCTTACAAGCTTGCTC  700
      ||| |||||||||| ||| ||||||| ||||||||||||| ||||||   
seq2  CTG-AGTCAGTGCA-GACTCCATGGT-GAGCCCTGCTTAC-AGCTTG--T  689

seq1  CTCATGGCTTCTTCAGCCTGCTTTCTTATACCACAGGACCACCTGCCAAG  750
      ||||| |||||||||| |||| |||||| |||||| ||||||||||  ||
seq2  CTCAT-GCTTCTTCAG-CTGC-TTCTTA-ACCACA-GACCACCTGC--AG  732

seq1  GCAATCCACTTCTTGCAGTGGGCTTAGCCCTACCACATCA  790
      |||  |||  || ||||||||   |   ||||||| ||||
seq2  GCA--CCA--TC-TGCAGTGGCTAT---CCTACCA-ATCA  763

seq1: chr14_6700359_6700745
seq2: B6Ng01-117K11.g_68_451 (reverse)

seq1  GAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGA  50
         | ||||||||||||||||||||||||||| | |||||||||||||||
seq2  ---GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGA  47

seq1  GGAGGAAGAGGAAGACAGCTGACCATGACCTCATCGAATATGTGCTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGAGGAAGACAGCTGACCATGACCTCATCGAATATGTGCTTGTG  97

seq1  ACGTGCACGCGCGTGCGCACACACACACAAATATCTTTCCATGAATGACT  150
      | ||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  ATGTGCACGCGCGTGCGCACACACACACAAATATCTTTCCATGAGAGACT  147

seq1  GCATAGTTATTAAATACTTGCAATGTGAATATTATCATTAGAACAAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTTATTAAATACTTGCAATGTGAATATTATCATTAGAACAAGCCC  197

seq1  ACTGACTTTAGTTCCCATTGAAGATCCCCGGGGTCATTCCCCTGTTTGGC  250
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTTAATTCCCATTGAAGATCCCCGGGGTCATTCCCCTGTTTGGC  247

seq1  AGGCAGTGAACAGTGCAGAACAGTTTGGGCTGGGGAGGCAGCTCACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGAACAGTGCAGAACAGTTTGGGCTGGGGAGGCAGCTCACTGGT  297

seq1  AGACTGCTTTGCTAGCATGCATGAAGCTCTGGATTTAGTTCCCAGTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTTTGCTAGCATGCATGAAGCTCTGGATTTAGTTCCCAGTATTG  347

seq1  CATAGAAACAAGGTGCAGTGTCACTCACCTGGAATTC  387
      |||||||||||||||||||||||||||||||||||||
seq2  CATAGAAACAAGGTGCAGTGTCACTCACCTGGAATTC  384