BAC Information

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BAC

Clone NameB6Ng01-118D08
Chromosome14 (Build37)
Map Location 5,968,354 - 5,996,857
singlet/doubletdoublet
Overlap geneLOC100041243, EG666684
Upstream geneLOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598
Downstream geneLOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470, LOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118D08.bB6Ng01-118D08.g
ACCDH922748DH922749
length1,1561,130
definitionDH922748|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D08, 5' end.DH922749|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,968,354 - 5,969,516)(5,995,715 - 5,996,857)
sequence
gaattctgcaaccaaaggtgtgcactacaatggctcaccaatgaagatct
caaagtaacagtaataaaagggaattcgtgagcagcaggggagaaattat
ttgaaaatctaaaacactaaagaaagtcaaggaactttttataaaccaaa
tgagacaatatgccatgtatttgaaatggtagtagccatttcgagaaata
gagtttgatgctggagacctgccataaatgccaagtcagattgggcctga
ggtgtgctaggggactccctcaaaacaaagaaacaaactgaacaaagaaa
acgcaagtgcatgtcccttaggtcagagaaccactgtgaaagcttttaac
taggagaagcagttagtaggtcagaaactattttaaattggggattcctt
gaaagtttctcagaagcaatgggcttccaccaggcttttcccctgagctg
cctttagtgggaaatgaggcagctttcctttctttgcctacacagtattt
tcagccatcctgggtttcctctacagctgcagatgctgttgagttgcagt
catttacttagcaggaaccagcttagactggctttgcttttcaaagttac
aggccttaggagctggctactgaattctgtgttgatcagagtgggctgca
aggctaggtttttataagtaacagatgcctgcactttgaggaattaattg
cctggctcctggatgtgaagctgtgcaatgtgtctctaagcaatcatcat
cctttcaaagagtaagaaatggaacccgtcttctttcccaaataggcatg
gaccttagaccacctttcacttcagtcacccttgactggattctgggaaa
tgttgctatataaaacctgaaagtttaatgtgtaggttgaaatacaggat
agctgccaaagtgaccttttactatatagagtgtgggggaagagaacatt
agaatcataatcacattttggtcccagcttgtgccctctgtcttctttac
attaaaggaaagtctgactgtgttaggccttttactaggggtctttgtct
tgacttgtctgtggacgaatagtcagactaggacaaggtcaataaaggcc
attgtttgttttttggctgtggtatagcttctgtactctagcattatctg
gatctc
gaattctccagaattggaaggagaggttgcaaaaggggatcccacgggtc
catgagaggctccaggagaggcaccccagaaaaggaccaagctgggcaga
actagttaacaggtaggtcatggcagttgctagtgacatcatcagtaatg
ccttccttggagaatctcttgtatctaggatagaactagaatcttctgtg
ttgtcacctgtgttgtggtgacagcaactgcctgtggttcatcccttctg
tttgctctgggttcaccagccggaatgttttcctggctgctcaggctatt
tcagaaagagaatggcgatgaaggagagaccagaccaacagagaaggaag
agggaatcctttctcatgaaaaagaaagaaggatatggttatggagaagg
cacagtgagtcctgggcagagttggggaacttcctggtagaggaaggctt
gagctgggccttccaggattaggtcttacaagctgaagccttggactttg
tcaatgtcagaaaaggattcaagaatttctgatgattagtatgacagacc
caggaattgacaaacctgcagctacttttctgggagctatttaatttcat
tttgagtggcaaaaaatgtcaggagtgggcactataagaataacagtgtg
tcctttcatggaagggagttgaagcacttcatcttccagattactgtagg
taacttgagtctctgatgaaaagaacagagaaggatgctcccctggtcat
gtcatgtggtgaggactcagacactttggatttgaagacacaccattaat
tagtgcttgatagtggtaagcactatgaactccaggatttccctgcgtcc
catcagatatgacctgacatgttccccatatctttaggtctgaggcagct
tattacatttcaaggcaccgggcctgtacagggagtgtggcatatgtctg
acaatggtggtaggagaggaacatagcttagcaactagctggaagatagc
tttcttcctcttttaggaatcacttgtcttatcttttctctcctccatct
ctctgggactcagagtgactccccctgccctcgggccatcagtatgcaat
tctttgtggtaccctaccctgcaggggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5968354_5969516
seq2: B6Ng01-118D08.b_46_1201

seq1  GAATTCTGCAACCAAAGGTGTGCACTACAATGGCTCACCAATGAAGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAACCAAAGGTGTGCACTACAATGGCTCACCAATGAAGATCT  50

seq1  CAAAGTAACAGTAATAAAAGGGAATTCGTGAGCAGCAGGGGAGAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAACAGTAATAAAAGGGAATTCGTGAGCAGCAGGGGAGAAATTAT  100

seq1  TTGAAAATCTAAAACACTAAAGAAAGTCAAGGAACTTTTTATAAACCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATCTAAAACACTAAAGAAAGTCAAGGAACTTTTTATAAACCAAA  150

seq1  TAAGACAATATGCCATGTATTTGAAATGGTATTAGCCATTTCGAGAAATA  200
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAGACAATATGCCATGTATTTGAAATGGTAGTAGCCATTTCGAGAAATA  200

seq1  GAGTTTGATGCTGGAGACCTGCCATAAATTCCAAGTCAGATTGGGCCTGA  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGTTTGATGCTGGAGACCTGCCATAAATGCCAAGTCAGATTGGGCCTGA  250

seq1  GGTATGCTAGGGGACTCCCTCAAAACAAAGAAACAAACTGAACAAAGAAA  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTAGGGGACTCCCTCAAAACAAAGAAACAAACTGAACAAAGAAA  300

seq1  AGGCAAGTGCATGTCCCTTAGGTCAGAGAACCACTGTGAAAGCTTTTAAC  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAGTGCATGTCCCTTAGGTCAGAGAACCACTGTGAAAGCTTTTAAC  350

seq1  TAGGAGAAGCAGTTAGTAGGTCAGAAACTATTTTAAATTGGGGATTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAGCAGTTAGTAGGTCAGAAACTATTTTAAATTGGGGATTCCTT  400

seq1  GAAAGTTTCTCAGAAGCAATCTGCTTCCACCAGGCTTTTCCCCTGAGCTG  450
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GAAAGTTTCTCAGAAGCAATGGGCTTCCACCAGGCTTTTCCCCTGAGCTG  450

seq1  CCTTTAGTGGGAAATGAGGCAGCTTTCCTTTCTTTGCCTACACAGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTGGGAAATGAGGCAGCTTTCCTTTCTTTGCCTACACAGTATTT  500

seq1  TCAGCCATCCTGGGTTTCCTCTACAGCTGCAGATGCTGTTGAGTTGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCATCCTGGGTTTCCTCTACAGCTGCAGATGCTGTTGAGTTGCAGT  550

seq1  CATTTACTTAGCAGGAATCAGCTTAGACTGGCTTTGCTTTTCAAAGTTAC  600
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATTTACTTAGCAGGAACCAGCTTAGACTGGCTTTGCTTTTCAAAGTTAC  600

seq1  AGGCCTTAGGAGCTGGCTACTGAATTCTGTGTTGATCAGAGCGGGCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGCCTTAGGAGCTGGCTACTGAATTCTGTGTTGATCAGAGTGGGCTGCA  650

seq1  AGGCTAGGTTTTTATAAGTAATGGATACCTGAACTTTGAGGAATTAATTG  700
      |||||||||||||||||||||  ||| |||| ||||||||||||||||||
seq2  AGGCTAGGTTTTTATAAGTAACAGATGCCTGCACTTTGAGGAATTAATTG  700

seq1  CCTGGCTCCTGGATGTGAAGCTGTGCAATGTTTGTCTAAGCAATCATCAT  750
      ||||||||||||||||||||||||||||||| | ||||||||||||||||
seq2  CCTGGCTCCTGGATGTGAAGCTGTGCAATGTGTCTCTAAGCAATCATCAT  750

seq1  CCTTTCAAAGAGTAAGAAATGGAACCCGTCTTCTTTCCCAAATAGGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAAGAGTAAGAAATGGAACCCGTCTTCTTTCCCAAATAGGCATG  800

seq1  GGCCTTAGACCACCTTTCACTTCAGTCACCCTTGACTGGATTCTGGGAAA  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAGACCACCTTTCACTTCAGTCACCCTTGACTGGATTCTGGGAAA  850

seq1  TGTTGCTCTATAAAACCTGAAAGTTTAATGTGTAAGTTGAAATACAGGAT  900
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  TGTTGCTATATAAAACCTGAAAGTTTAATGTGTAGGTTGAAATACAGGAT  900

seq1  AGCTGCCAAAGTGACCTTTCACTATATAGAGTGT-GGGGAAGAGAACATT  949
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  AGCTGCCAAAGTGACCTTTTACTATATAGAGTGTGGGGGAAGAGAACATT  950

seq1  AGAATCATAATCACATTTTGGTCCCAGCTTGTGCCCTCTGTCTTCTTTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATAATCACATTTTGGTCCCAGCTTGTGCCCTCTGTCTTCTTTAC  1000

seq1  ATTAAAAGGAAAAGTCTGAACTGTGTTAGGCCTTTTACTAGGGGTCTTTG  1049
      ||||||  | |||||||| |||||||||||||||||||||||||||||||
seq2  ATTAAA--GGAAAGTCTG-ACTGTGTTAGGCCTTTTACTAGGGGTCTTTG  1047

seq1  TCTTGACTTGTCTGTGACCAAATAGTCAGACTAAGACAAAGGTCAATAAA  1099
      ||||||||||||||||  | ||||||||||||| ||| ||||||||| ||
seq2  TCTTGACTTGTCTGTGGACGAATAGTCAGACTAGGAC-AAGGTCAAT-AA  1095

seq1  AGGGCATTGTTTTGGTTTTGGCTGT-GTATGGGCCTTCTGTACTCTAGGC  1148
      ||| ||||||||   |||||||||| |||| |  ||||||||||||| ||
seq2  AGGCCATTGTTTGTTTTTTGGCTGTGGTATAG--CTTCTGTACTCTA-GC  1142

seq1  ACTGATCTGGATCTC  1163
      | | |||||||||||
seq2  A-TTATCTGGATCTC  1156

seq1: chr14_5995715_5996857
seq2: B6Ng01-118D08.g_69_1198 (reverse)

seq1  GCACACCCTGCA-GGTAGGTAAACACAAAAGAATTTGCATACTTGATGGC  49
      |||| ||||||| ||||||  | ||| |||||| |||||||| |||||||
seq2  GCAC-CCCTGCAGGGTAGGGTACCAC-AAAGAA-TTGCATAC-TGATGGC  46

seq1  CCAGGGGCAGGGGAGACCATTCTGAGTCCCAAGAAGAAGATGGAGGGAGA  99
      ||  |||||||||    || |||||||||| |||   ||||||| |||||
seq2  CCGAGGGCAGGGGGAGTCACTCTGAGTCCC-AGA--GAGATGGA-GGAGA  92

seq1  GAAAAGATAAAGAC-AGTGAATTCCTAAAAGAGCAGAAAAGCTATCTTCC  148
      |||||||| ||||| |||| ||||||||||||| |  |||||||||||||
seq2  GAAAAGAT-AAGACAAGTG-ATTCCTAAAAGAGGAAGAAAGCTATCTTCC  140

seq1  AGCTAGTTTGCTAAGCTATGTTCCTCTTCCTAACCACCATTGTCAGACAT  198
      |||||| ||||||||||||||||||| |||| ||||||||||||||||||
seq2  AGCTAG-TTGCTAAGCTATGTTCCTC-TCCT-ACCACCATTGTCAGACAT  187

seq1  ATGCCACACTCCCTGTTACAGGCCCGGTTGCCTTGAAATGT-ATAAGCTG  247
      ||||||||||||||| ||||||||||| ||||||||||||| ||||||||
seq2  ATGCCACACTCCCTG-TACAGGCCCGG-TGCCTTGAAATGTAATAAGCTG  235

seq1  CCTCAGACCTAAAGATATGGGGAACATTGTCAGGTCATATCTGATGGGAC  297
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTCAGACCTAAAGATATGGGGAACA-TGTCAGGTCATATCTGATGGGAC  284

seq1  GCAGGGAAATCCTGGAGTTCATAGTGCTTACCACTATCAAGCACTAATTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAATCCTGGAGTTCATAGTGCTTACCACTATCAAGCACTAATTA  334

seq1  ATGGTGTGTCTTCAAATCCAAAGTGTCTGAGTCCTCACCACATGACATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGTCTTCAAATCCAAAGTGTCTGAGTCCTCACCACATGACATGA  384

seq1  CCAGGGGAGCATCCTTCTCTGTTCTTTTCATCAGAGACTCAAGTTACCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAGCATCCTTCTCTGTTCTTTTCATCAGAGACTCAAGTTACCTA  434

seq1  CAGTAATCTGGAAGATGAAGTGCTTCAACTCCCTTCCATGAAAGGACACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATCTGGAAGATGAAGTGCTTCAACTCCCTTCCATGAAAGGACACA  484

seq1  CTGTTATTCTTATAGTGCCCACTCCTGACATTTTTTGCCACTCAAAATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTCTTATAGTGCCCACTCCTGACATTTTTTGCCACTCAAAATGA  534

seq1  AATTAAATAGCTCCCAGAAAAGTAGCTGCAGGTTTGTCAATTCCTGGGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATAGCTCCCAGAAAAGTAGCTGCAGGTTTGTCAATTCCTGGGTC  584

seq1  TGTCATACTAATCATCAGAAATTCTTGAATCCTTTTCTGACATTGACAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATACTAATCATCAGAAATTCTTGAATCCTTTTCTGACATTGACAAA  634

seq1  GTCCAAGGCTTCAGCTTGTAAGACCTAATCCTGGAAGGCCCAGCTCAAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGGCTTCAGCTTGTAAGACCTAATCCTGGAAGGCCCAGCTCAAGC  684

seq1  CTTCCTCTACCAGGAAGTTCCCCAACTCTGCCCAGGACTCACTGTGCCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTACCAGGAAGTTCCCCAACTCTGCCCAGGACTCACTGTGCCTT  734

seq1  CTCCATAACCATATCCTTCTTTCTTTTTCATGAGAAAGGATTCCCTCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAACCATATCCTTCTTTCTTTTTCATGAGAAAGGATTCCCTCTTC  784

seq1  CTTCTCTGTTGGTCTGGTCTCTCCTTCATCGCCATTCTCTTTCTGAAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTTGGTCTGGTCTCTCCTTCATCGCCATTCTCTTTCTGAAATA  834

seq1  GCCTGAGCAGCCAGGAAAACATTCCGGCTGGTGAACCCAGAGCAAACAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGCAGCCAGGAAAACATTCCGGCTGGTGAACCCAGAGCAAACAGA  884

seq1  AGGGATGAACCACAGGCAGTTGCTGTCACCACAACACAGGTGACAACACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGAACCACAGGCAGTTGCTGTCACCACAACACAGGTGACAACACA  934

seq1  GAAGATTCTAGTTCTATCCTAGATACAAGAGATTCTCCAAGGAAGGCATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCTAGTTCTATCCTAGATACAAGAGATTCTCCAAGGAAGGCATT  984

seq1  ACTGATGATGTCACTAGCAACTGCCATGACCTACCTGTTAACTAGTTCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGATGTCACTAGCAACTGCCATGACCTACCTGTTAACTAGTTCTG  1034

seq1  CCCAGCTTGGTCCTTTTCTGGGGTGCCTCTCCTGGAGCCTCTCATGGACC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTGGTCCTTTTCTGGGGTGCCTCTCCTGGAGCCTCTCATGGACC  1084

seq1  CGTGGGATCCCCTTTTGCAACCTCTCCTTCCAATTCTGGAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGATCCCCTTTTGCAACCTCTCCTTCCAATTCTGGAGAATTC  1130