BAC Information

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BAC

Clone NameB6Ng01-118I18
Chromosome14 (Build37)
Map Location 102,565,735 - 102,737,934
singlet/doubletdoublet
Overlap genenone
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118I18.bB6Ng01-118I18.g
ACCDH922995DH922996
length1,0191,002
definitionDH922995|Mus musculus domesticus DNA, BAC clone: B6Ng01-118I18, 5' end.DH922996|Mus musculus domesticus DNA, BAC clone: B6Ng01-118I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,565,735 - 102,567,206)(102,736,926 - 102,737,934)
sequence
gaattctttgcctgttctttatgaatatagttagtgatcagatgaaagga
tggtaaaggtcattgccattgcagtgggaagtttcccctctttatgggat
ctaggtaagagagttttaccctttgctctgtctggtggtgttctgtaaat
tcttggaccacgttttcctgatactgttttaatgtgtccatgagcctctg
aaatcctgattcaccttggtaaatttgtaaggcaatgccttttcttctcc
caggaagacacttttagttatctatgctgcctgggtggtgatggacaggt
tgctacacacggtacactcattctcagtctttgtaatggagttaaagctg
cctgtaaacgggagtttctaaggtcagggcataaccagaaagatcactgt
gcttataaagcataggataacagaaagcagggcacagcctgatcttaaca
tgcattctactttgtgtctataaatggcaattagaattggaaaccactta
aatatgatatgagcattatcttccagaattcgaaatctactattttatcc
atgcatctaaaactggatcaacattttaggagtcattatgctgctgacat
gcattaagtttgcagccaacgattataaggcgaagtgtcagaaaggcaag
tactttccttcttacccttatgtgtttgaaagctaattttattttacatc
cattacagaaaataaccaatattggtgaagacaaaccaaatagaatccta
agtcatgataaatgtaactgtagaatggcaataatatagtcactgtggaa
aatggagttttctcaaaaaaagtaagaatagagttaccatgttactggat
tctgcatctgtgtatgtatgtctacatgaagtttaatcagggctatgaaa
agatattgggcactaccgatgtgatggcatcatccataatagacaacagt
gaggtgaaacacatgtggtccaggttcgtaattaaaggttatcagcctta
atgggggggggggggggtg
gaattctttcaggtataatccaaggagcccatatattgatgatatgaata
ttaatgagcagcgcttgtctctcctgcacttgatgagtgtgagactaatt
actattagacagggttcatatagaaattactcactgcaccactgaatctc
caccattacacaggcaggcatgatgtatatctctataaagagagcaattg
ttgctagaaagttattttccactggtctttttgttttggcaaaaaaaaaa
aagttgatatttattgtcttaaagatcagctaaactttgaaatgtatact
cttcagaagtcaagaacccccacaaaataccctgagaaccccacagttcc
catgttgtggagggaaactgagaccgatgcagatagatacttatagctaa
ccattggactgaggtctgggacccctatgaaagagttagtggaaggattg
aaggaactgaaggggaaggcaactccatgagaagaacaacggtatcaact
aaaccagacccctcagacctcccagagactaagccaccaaccaaagcaca
tacatgggctgatccttgggccctggcatacacgtagcagaggactgcct
tgtctggcctcagtgggagaggatgcatctaatcctgaagatgctccagg
ggaggtggatgcctaggggacatgagctgagagtgcatgggtaggtgaca
gaggtggggtatggggaacactccctcagagcgtaaggggagagaggatg
gggtgaagaatctcttgcaggggctaccaacatttgagttgtaaataaat
gaaacaataaaaaaaagtaaagcaaacaaagaaagagagacttacttatg
ttctacttctaagggtacatatgtacccataacaattagtttaaaagagg
ccatgaatttgaaggggaagaaagaagatgaatataggaaagtttgagaa
gaaagaaatgaaaagaatccttggttaagaaataaaatatcttcaaaaaa
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_102565735_102567206
seq2: B6Ng01-118I18.b_44_1062

seq1  GAATTCTTTGCCTGTTCTTTATGAATATAGTTAGTGATCAGATGAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCCTGTTCTTTATGAATATAGTTAGTGATCAGATGAAAGGA  50

seq1  TGGTAAAGGTCATTGCCATTGCAGTGGGAAGTTTCCCCTCTTTATGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGGTCATTGCCATTGCAGTGGGAAGTTTCCCCTCTTTATGGGAT  100

seq1  CTAGGTAAGAGAGTTTTACCCTTTGCTCTGTCTGGTGGTGTTCTGTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAAGAGAGTTTTACCCTTTGCTCTGTCTGGTGGTGTTCTGTAAAT  150

seq1  TCTTGGACCACGTTTTCCTGATACTGTTTTAATGTGTCCATGAGCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGACCACGTTTTCCTGATACTGTTTTAATGTGTCCATGAGCCTCTG  200

seq1  AAATCCTGATTCACCTTGGTAAATTTGTAAGGCAATGCCTTTTCTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGATTCACCTTGGTAAATTTGTAAGGCAATGCCTTTTCTTCTCC  250

seq1  CAGGAAGACACTTTTAGTTATCTATGCTGCCTGGGTGGTGATGGACAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGACACTTTTAGTTATCTATGCTGCCTGGGTGGTGATGGACAGGT  300

seq1  TGCTACACACGGTACACTCATTCTCAGTCTTTGTAATGGAGTTAAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACACACGGTACACTCATTCTCAGTCTTTGTAATGGAGTTAAAGCTG  350

seq1  CCTGTAAACGGGAGTTTCTAAGGTCAGGGCATAACCAGAAAGATCACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAACGGGAGTTTCTAAGGTCAGGGCATAACCAGAAAGATCACTGT  400

seq1  GCTTATAAAGCATAGGATAACAGAAAGCAGGGCACAGCCTGATCTTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAAAGCATAGGATAACAGAAAGCAGGGCACAGCCTGATCTTAACA  450

seq1  TGCATTCTACTTTGTGTCTATAAATGGCAATTAGAATTGGAAACCACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTACTTTGTGTCTATAAATGGCAATTAGAATTGGAAACCACTTA  500

seq1  AATATGATATGAGCATTATCTTCCAGAATTCGAAATCTACTATTTTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATATGAGCATTATCTTCCAGAATTCGAAATCTACTATTTTATCC  550

seq1  ATGCATCTAAAACTGGATCAACATTTTAGGAGTCATTATGCTGCTGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTAAAACTGGATCAACATTTTAGGAGTCATTATGCTGCTGACAT  600

seq1  GCATTAAGTTTGCAGCCAACGATTATAAGGCGAAGTGTCAGAAAGGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAGTTTGCAGCCAACGATTATAAGGCGAAGTGTCAGAAAGGCAAG  650

seq1  TACTTTCCTTCTTACCCTTATGTGTTTGAAAGCTAATTTTATTTTACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCTTCTTACCCTTATGTGTTTGAAAGCTAATTTTATTTTACATC  700

seq1  CATTACAGAAAATAACCAATATTGGTGAAGACAAACCAAATAGAATCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGAAAATAACCAATATTGGTGAAGACAAACCAAATAGAATCCTA  750

seq1  AGTCATGATAAATGTAACTGTAGAATGGCAATAATATAGTCACTGTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGATAAATGTAACTGTAGAATGGCAATAATATAGTCACTGTGGAA  800

seq1  AATGGAGTTTTCTCAAAAAAAGTAAGAATAGAGTTACCATGTTACTGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTTTTCTCAAAAAAAGTAAGAATAGAGTTACCATGTTACTGGAT  850

seq1  TCTGCATCTGTGTATGTATGTCTACATGAAGTTTAATCAGGGCTATGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCTGTGTATGTATGTCTACATGAAGTTTAATCAGGGCTATGAAA  900

seq1  AGATATTGGGCACTACCGATGTGATGGCATCATCCATAATAGACAACAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGATATTGGGCACTACCGATGTGATGGCATCATCCATAATAGACAACA-G  949

seq1  TGAGGTGAAACACATGTGGTCCAGGTTCGTAATTAAAGGTTATCAGCCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGAAACACATGTGGTCCAGGTTCGTAATTAAAGGTTATCAGCCTT  999

seq1  AAT---GGGGGGGGGGGGTGTTATTAGGTTTCCATCATTGTAACCAAATG  1047
      |||   ||||||||||||||                              
seq2  AATGGGGGGGGGGGGGGGTG------------------------------  1019

seq1  ACCTGACACAGGAAATCTGAGGAGAGGTTTACTTTGTTTCACAATTCTAG  1097
                                                        
seq2  --------------------------------------------------  1019

seq1  ACAGATTTATAAGTAGAAGTTTGAACTTCTTGCTTTTTCTTATGAATCTC  1147
                                                        
seq2  --------------------------------------------------  1019

seq1  AGAGCTCCAAAATCAAATGATCCAGTCAATTCCTTCTGCACAGAATTCAT  1197
                                                        
seq2  --------------------------------------------------  1019

seq1  CTGACAATTACTTATTAAGCATCCAGTGTGTGCCAAGTCCTGTGTTGGCT  1247
                                                        
seq2  --------------------------------------------------  1019

seq1  ATTATGAGGATTCAGTAATAAGTGACAGAGACACTCCTTAAATATTTGAA  1297
                                                        
seq2  --------------------------------------------------  1019

seq1  GTCTATAGCAAAGTGTGGCATAAGCTCACTGTACTGGCTGCTTTTGTGTG  1347
                                                        
seq2  --------------------------------------------------  1019

seq1  TCAACTTGACACAGGCTGGAGTTATCACAGAGAAAAGAGCTTCAGTTTCG  1397
                                                        
seq2  --------------------------------------------------  1019

seq1  GAAGTGTCTCCATGAGATCCAGCTCTAAGGCATTTTCTCAATTAGTGATC  1447
                                                        
seq2  --------------------------------------------------  1019

seq1  AAAGAGGGAGGTCCCCTTGTGGGTG  1472
                               
seq2  -------------------------  1019

seq1: chr14_102736926_102737934
seq2: B6Ng01-118I18.g_70_1071 (reverse)

seq1  TTTTTTTTGAGATTTATTTTATTTTCTTAA-CAATGTTTCTTCTCCCTTC  49
      |||||||||| |  ||||||| |||||||| ||| | ||||| |  | | 
seq2  TTTTTTTTGA-AGATATTTTA-TTTCTTAACCAAGGATTCTTTT--CATT  46

seq1  TCTTTCCTTCCTCAAAACTTTCCTATATTCATCTTCTTTC-TCCCCTTCA  98
      ||||||  | ||| |||||||||||||||||||||||||| |||||||||
seq2  TCTTTC--TTCTC-AAACTTTCCTATATTCATCTTCTTTCTTCCCCTTCA  93

seq1  AATTCATGGCCTCTTTTTAAACTAATTGTTATGTGTACATATGTACCCCT  148
      ||||||||||||| ||||||||||||||||||| ||||||||||| ||||
seq2  AATTCATGGCCTC-TTTTAAACTAATTGTTATGGGTACATATGTA-CCCT  141

seq1  TAGAAGTAGAACATAAGTAAGTCTCTCTTTCTTTGTTTGCTTTACTTTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAGAACATAAGTAAGTCTCTCTTTCTTTGTTTGCTTTACTTTTT  191

seq1  TTTATTGTTTCATTTATTTACAACTCAAATGTTGGTAGCCCCTGCAAGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTTTCATTTATTTACAACTCAAATGTTGGTAGCCCCTGCAAGAG  241

seq1  ATTCTTCACCCCATCCTCTCTCCCCTTACGCTCTGAGGGAGTGTTCCCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCACCCCATCCTCTCTCCCCTTACGCTCTGAGGGAGTGTTCCCCA  291

seq1  TACCCCACCTCTGTCACCTACCCATGCACTCTCAGCTCATGTCCCCTAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCACCTCTGTCACCTACCCATGCACTCTCAGCTCATGTCCCCTAGG  341

seq1  CATCCACCTCCCCTGGAGCATCTTCAGGATTAGATGCATCCTCTCCCACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCTCCCCTGGAGCATCTTCAGGATTAGATGCATCCTCTCCCACT  391

seq1  GAGGCCAGACAAGGCAGTCCTCTGCTACGTGTATGCCAGGGCCCAAGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGACAAGGCAGTCCTCTGCTACGTGTATGCCAGGGCCCAAGGAT  441

seq1  CAGCCCATGTATGTGCTTTGGTTGGTGGCTTAGTCTCTGGGAGGTCTGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATGTATGTGCTTTGGTTGGTGGCTTAGTCTCTGGGAGGTCTGAG  491

seq1  GGGTCTGGTTTAGTTGATACCGTTGTTCTTCTCATGGAGTTGCCTTCCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGTTTAGTTGATACCGTTGTTCTTCTCATGGAGTTGCCTTCCCC  541

seq1  TTCAGTTCCTTCAATCCTTCCACTAACTCTTTCATAGGGGTCCCAGACCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCTTCAATCCTTCCACTAACTCTTTCATAGGGGTCCCAGACCT  591

seq1  CAGTCCAATGGTTAGCTATAAGTATCTATCTGCATCGGTCTCAGTTTCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAATGGTTAGCTATAAGTATCTATCTGCATCGGTCTCAGTTTCCC  641

seq1  TCCACAACATGGGAACTGTGGGGTTCTCAGGGTATTTTGTGGGGGTTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAACATGGGAACTGTGGGGTTCTCAGGGTATTTTGTGGGGGTTCTT  691

seq1  GACTTCTGAAGAGTATACATTTCAAAGTTTAGCTGATCTTTAAGACAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGAAGAGTATACATTTCAAAGTTTAGCTGATCTTTAAGACAATA  741

seq1  AATATCAACTTTTTTTTTTTTGCCAAAACAAAAAGACCAGTGGAAAATAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAACTTTTTTTTTTTTGCCAAAACAAAAAGACCAGTGGAAAATAA  791

seq1  CTTTCTAGCAACAATTGCTCTCTTTATAGAGATATACATCATGCCTGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGCAACAATTGCTCTCTTTATAGAGATATACATCATGCCTGCCT  841

seq1  GTGTAATGGTGGAGATTCAGTGGTGCAGTGAGTAATTTCTATATGAACCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGGTGGAGATTCAGTGGTGCAGTGAGTAATTTCTATATGAACCC  891

seq1  TGTCTAATAGTAATTAGTCTCACACTCATCAAGTGCAGGAGAGACAAGCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATAGTAATTAGTCTCACACTCATCAAGTGCAGGAGAGACAAGCG  941

seq1  CTGCTCATTAATATTCATATCATCAATATATGGGCTCCTTGGATTATACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATTAATATTCATATCATCAATATATGGGCTCCTTGGATTATACC  991

seq1  TGAAAGAATTC  1009
      |||||||||||
seq2  TGAAAGAATTC  1002