BAC Information

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BAC

Clone NameB6Ng01-119E04
Chromosome14 (Build37)
Map Location 79,611,807 - 79,724,435
singlet/doubletdoublet
Overlap geneAU017455, 1190002H23Rik
Upstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765
Downstream geneNarg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119E04.bB6Ng01-119E04.g
ACCDH923523DH923524
length1,188455
definitionDH923523|Mus musculus domesticus DNA, BAC clone: B6Ng01-119E04, 5' end.DH923524|Mus musculus domesticus DNA, BAC clone: B6Ng01-119E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,611,807 - 79,613,023)(79,723,975 - 79,724,435)
sequence
gaattctatcagaccttcaaagaagacctaataccaataatactcctcaa
actagtcacaaaatagaaacagaaggaacactacccaattcattctatga
agccacagttacactgcgtattctcccttggagatggaacagtttctgtc
taatcaggaacttgtcacactttcctttcatagaggacttcacaagaggc
tttttcctacttctatcatgttaatgttccaaatagattttaaaaactgg
ttgagtgcatattacttttagcttcagaagatatcatgtatatttaagaa
tcatttaactattatagattattttgatgactttaaaatgtcaatactga
gttgcatattttaaaataaattttattagtttaataaaaatttatttata
tagatatatattatccctcccttttaactccccgtttccccatcagccca
cccctccccctcccccacattgtcacaatggagattgtgtccatggaaac
ggccattccaacatcttgtatctttcttttcctgtggtgtcaccagtttg
agtgtgacctgagaacataggaagtgctggcctaggcagacgcagcgggg
gtgcagggtagagcagagtgaggtatggttgctcaacaggaggattccat
tctgtcatgtttgtccatcaccaccttctcgtctctgcagtctcaccttg
tgcttggggcacctcactgagaaattctcctcattcagcaaacaatctgc
atcaatggcacatgggtaatggtatcggaaggtgcagcctttgttgtagc
agcccagagtagcgccagccttctggcagtgggagcatgtcacatctctg
gcgttttccagcgcttccagcaggccatagagcctgccatagaccaagta
ggttccattggcccagagaatacaatcctcatggacccaaaattcgttgc
tgggagaggtcgttcaggatttgtaactcccactcagaccaccttttgat
gtgtaggtacagaggcttgtgtctaaaacagtctcttactgttgccctag
ggctacattttacgagggcgaccctgacaggaccgagacctccagcagag
ttttggagcgctggcgcgatgactaggatgagcagcagctcctctgcctc
cttcgctgctgtgccctgagcagttttgaacatagtac
caagctgtcttgagttgagcttcaagcattggagactggaggggagcaga
ggtgaggaaagttgatcagctggcaaggtgggaatagtattctggcgatt
tgaaaggtaaaacctaaagttaaagtttcattactgccctagccaccttc
cctccaagtctgccggctttatacgctgctccatccatgtccacggggaa
actaggtcggaacagacaacttccctctccaactgttcattaaatcacaa
tgcttagttcttgttcagtggacactgcccaacactccgaaagcctgctg
ctccttctgctggcgcttgggggtcccaggatgcagcgcttttcttgcta
gtgtctacaacagctccttaaaccattttatttcagagagtctgtggcct
ctagcatgtgtgtgtgtgtgtgtgtgtcaccatcaatctgtgtgtatgtg
ggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79611807_79613023
seq2: B6Ng01-119E04.b_45_1232

seq1  GAATTCTATCAGACCTTCAAAGAAGACCTAATACCAATAATACTCCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCAGACCTTCAAAGAAGACCTAATACCAATAATACTCCTCAA  50

seq1  ACTAGTCACAAAATAGAAACAGAAGGAACACTACCCAATTCATTCTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCACAAAATAGAAACAGAAGGAACACTACCCAATTCATTCTATGA  100

seq1  AGCCACAGTTACACTGCGTATTCTCCCTTGGAGATGGAACAGTTTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGTTACACTGCGTATTCTCCCTTGGAGATGGAACAGTTTCTGTC  150

seq1  TAATCAGGAACTTGTCACACTTTCCTTTCATAGAGGACTTCACAAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGGAACTTGTCACACTTTCCTTTCATAGAGGACTTCACAAGAGGC  200

seq1  TTTTTCCTACTTCTATCATGTTAATGTTCCAAATAGATTTTAAAAACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTACTTCTATCATGTTAATGTTCCAAATAGATTTTAAAAACTGG  250

seq1  TTGAGTGCATATTACTTTTAGCTTCAGAAGATATCATGTATATTTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGCATATTACTTTTAGCTTCAGAAGATATCATGTATATTTAAGAA  300

seq1  TCATTTAACTATTATAGATTATTTTGATGACTTTAAAATGTCAATACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAACTATTATAGATTATTTTGATGACTTTAAAATGTCAATACTGA  350

seq1  GTTGCATATTTTAAAATAAATTTTATTAGTTTAATAAAAATTTATTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATATTTTAAAATAAATTTTATTAGTTTAATAAAAATTTATTTATA  400

seq1  TAGATATATATTATCCCTCCCTTTTAACTCCCCGTTTCCCCATCAGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATATTATCCCTCCCTTTTAACTCCCCGTTTCCCCATCAGCCCA  450

seq1  CCCCTCCCCCTCCCCCACATTGTCACAATGGAGATTGTGTCCATGGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCTCCCCCACATTGTCACAATGGAGATTGTGTCCATGGAAAC  500

seq1  GGCCATTCCAACATCTTGTATCTTTCTTTTCCTGTGGTGTCACCAGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTCCAACATCTTGTATCTTTCTTTTCCTGTGGTGTCACCAGTTTG  550

seq1  AGTGTGACCTGAGAACATAGGAAGTGCTGGCCTAGGCAGACGCAGCGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGACCTGAGAACATAGGAAGTGCTGGCCTAGGCAGACGCAGCGGGG  600

seq1  GTGCAGGGTAGAGCAGAGTGAGGTATGGTTGCTCAACAGGAGGATTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGGTAGAGCAGAGTGAGGTATGGTTGCTCAACAGGAGGATTCCAT  650

seq1  TCTGTCATGTTTGTCCATCACCACCTTCTCGTCTCTGCAGTCTCACCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATGTTTGTCCATCACCACCTTCTCGTCTCTGCAGTCTCACCTTG  700

seq1  TGCTTGGGGCACCTCACTGAGAAATTCTCCTCATTCAGCAAACAATCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGGCACCTCACTGAGAAATTCTCCTCATTCAGCAAACAATCTGC  750

seq1  ATCAATGGCACATGGGTAATGGTATCGGAAGGTGCAGCCTTTGTTGTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGCACATGGGTAATGGTATCGGAAGGTGCAGCCTTTGTTGTAGC  800

seq1  AGCCCAGAGTAGCGCCAGCCTTCTGGCAGTGGGAGCATGTCACATCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGAGTAGCGCCAGCCTTCTGGCAGTGGGAGCATGTCACATCTCTG  850

seq1  GCGTTTTCCAGCGCTTCCAGCAGGCCATAGAGCCTGCCATAGACCAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTTCCAGCGCTTCCAGCAGGCCATAGAGCCTGCCATAGACCAAGTA  900

seq1  GGTTCCATTGGCCCAGAGAATACAATCCTCATGGACCCAAAATTCGTTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCATTGGCCCAGAGAATACAATCCTCATGGACCCAAAATTCGTTGC  950

seq1  TGGGGAGAGGTCGTTCAGGGATTTGTAACTCCCACTCAGGACCACCTTTT  1000
      | ||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  T-GGGAGAGGTCGTTCA-GGATTTGTAACTCCCACTCA-GACCACCTTTT  997

seq1  GATGTGGTAGGTACAGAGGGCTTTGTGTCTAAAACAGTCTCTTTACTGTT  1050
      ||||| |||||||||||||   ||||||||||||||||||| ||||||||
seq2  GATGT-GTAGGTACAGAGG--CTTGTGTCTAAAACAGTCTC-TTACTGTT  1043

seq1  GCCCTTAGGGGCTACATTTTTACGAGGGCGACCCCTGGACAGGGACCGAG  1100
      |||||   |||||||| |||||||||||||||||   |||| ||||||| 
seq2  GCCCT--AGGGCTACA-TTTTACGAGGGCGACCC--TGACA-GGACCGA-  1086

seq1  GACCTCCAGCAGAGTCTTTGGAGCGCTGGCGCAGATTGAACCTAGGATGA  1150
      ||||||||||||||| |||||||||||||||| || |||  |||||||||
seq2  GACCTCCAGCAGAGT-TTTGGAGCGCTGGCGC-GA-TGA--CTAGGATGA  1131

seq1  GCAGCCAGGCTCCTCTG-CTCCTTCTGCTGCTGTTGCTCCTGAGTGTCAG  1199
      |||||   ||||||||| ||||||| ||||||| ||| ||||||   |||
seq2  GCAGC--AGCTCCTCTGCCTCCTTC-GCTGCTG-TGC-CCTGAG---CAG  1173

seq1  TTTTTGAACTATTAGTAC  1217
       ||||||||   ||||||
seq2  -TTTTGAAC--ATAGTAC  1188

seq1: chr14_79723975_79724435
seq2: B6Ng01-119E04.g_66_526 (reverse)

seq1  GCACCAACATACACACACACACACACACACACACACACACACACACACAT  50
      ||||| ||||||||||| |   |     ||||||||||||||||||||||
seq2  GCACCCACATACACACAGATTGATGGTGACACACACACACACACACACAT  50

seq1  GCTAGAGGCCACAGACTCTCTGAAATAAAATGGTTTAAGGAGCTGTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGGCCACAGACTCTCTGAAATAAAATGGTTTAAGGAGCTGTTGTA  100

seq1  GACACTAGCAAGAAAAGCGCTGCATCCTGGGACCCCCAAGCGCCAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAGCAAGAAAAGCGCTGCATCCTGGGACCCCCAAGCGCCAGCAGA  150

seq1  AGGAGCAGCAGGCTTTCGGAGTGTTGGGCAGTGTCCACTGAACAAGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGCAGGCTTTCGGAGTGTTGGGCAGTGTCCACTGAACAAGAACT  200

seq1  AAGCATTGTGATTTAATGAACAGTTGGAGAGGGAAGTTGTCTGTTCCGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGTGATTTAATGAACAGTTGGAGAGGGAAGTTGTCTGTTCCGAC  250

seq1  CTAGTTTCCCCGTGGACATGGATGGAGCAGCGTATAAAGCCGGCAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCCCCGTGGACATGGATGGAGCAGCGTATAAAGCCGGCAGACTT  300

seq1  GGAGGGAAGGTGGCTAGGGCAGTAATGAAACTTTAACTTTAGGTTTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAGGTGGCTAGGGCAGTAATGAAACTTTAACTTTAGGTTTTACC  350

seq1  TTTCAAATCGCCAGAATACTATTCCCACCTTGCCAGCTGATCAACTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATCGCCAGAATACTATTCCCACCTTGCCAGCTGATCAACTTTCC  400

seq1  TCACCTCTGCTCCCCTCCAGTCTCCAATGCTTGAAGCTCAACTCAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTGCTCCCCTCCAGTCTCCAATGCTTGAAGCTCAACTCAAGACA  450

seq1  GCTTGGAATTC  461
      |||||||||||
seq2  GCTTGGAATTC  461