BAC Information

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BAC

Clone NameB6Ng01-119I20
Chromosome14 (Build37)
Map Location 66,433,715 - 66,550,128
singlet/doubletdoublet
Overlap genePbk, Esco2, Ccdc25, Scara3
Upstream geneHmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5
Downstream geneClu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119I20.bB6Ng01-119I20.g
ACCDH923736DH923737
length1,0941,120
definitionDH923736|Mus musculus domesticus DNA, BAC clone: B6Ng01-119I20, 5' end.DH923737|Mus musculus domesticus DNA, BAC clone: B6Ng01-119I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,433,715 - 66,434,822)(66,548,997 - 66,550,128)
sequence
gaattcaaacatcctgaaaatttttagatgacatggcaggtcatctaaat
ggacaattacgtctagtttacaaagggaattcaaatcattgtattttttt
ttttggtgttattttggttttttgaatcagggtttctctgtgtagccctg
gctgtcctggaacttctctgtagaccaggctggccttgaactcagaaatc
cgcctgcctctgcctggcttcaagtcattgttttattgaaggagttttta
ttaatttttctgttcatgtatttgattgctttttccaattttagtacctg
caccaagaaaagaagctgcttcatggagacataaagtcttcaaatgttgt
aattaaaggtgattttgaaacaattaaaatctgtgatgtaggagtctctc
tgccattggatgaaaatatgactggtaagtaggattgttttaaatttata
caattttgcattgtaaaacataataaaccttcatggtttaaatgaactat
ttttggaaactaatagtgtcttttcattgttttgcctcctgagtcctcag
ctccttcccttgccacatggtcaattattgacttcttggtagtgtgtata
ttttttgtctttgacttgttttaaatatgtcagttgggctcacaggcctc
ccagtcttcagcctgtgcccgcactggcccttattagcatggattttaac
tgaataactttgggcaagacacacccaataggctagagcttccccagctt
ctaggcattcttatctaatcacgttaatcaggatccactattgcatcttc
cctttccccttcaaatgtttcttctctacttgtaatttcattgaaagcct
caaaatagaattttgaagataaactttgattaataaactgctagtttttc
tcccttattgtttggaagtgagtataagcatttgttttgggtctatcctt
atttgtgtaaatggagattatagtaatgaaatacagaaaactatacactt
taaaaactgtccagtgcatttgatttatcttagtacagatagatttttaa
catgtaaagcaattttgctttagagatattatagatatatactt
gaattctgagagcatgcatgacttggttctgcaggtcatgggcctacagc
tacagctggacaacatctcttcctttttggatgaccatgaggagaacatg
catgacctccaataccacacccgatatgcccagaatcgcacagtggaaag
gttcgagtctctggaaggacgtatggcttctcatgagattgaaatcggca
ctatcttcaccaatatcaatgccaccgacaaccacgtgcacagcatgctc
aagtacctggacgacgtgcggctgtcttgcacactgggcttccacaccca
tgctgaagagctctactacctgaataaatccgtctccctcatgctgggca
ccacagatctgctcagggagcgcttcagtctgctcagtgcccggttagac
ttcaatgtccgaaacctctccatgatcatggaggaaatgaaggctgtgga
cacacaccacggagaaatccttcgcaatgtcaccgtcatccgaggtaaga
ggagggctgggcagacctctccagggactctggttattgttgaatacaag
agcatctgatgttagggaaatctccaagagtgtgtccattagatagagga
tgctagaaagaagatgctagataggaaaatagattgccaaaatcatcctt
taaccaattcccagggcagcaggcaactctaagaaatgcctttgaggatc
tggagcgatggctcagtgattaaaccacacgctgctcttccagaggcccc
ggttcagttccctgcacccacataaagaggctgacacttgtcacgctaac
ttcaggagatccaaagctctcttctggactccacaggtacatgcacacat
gtgctatacacaaataaaaataaataatttttagtgtttagaaattctaa
gctaagcttagtggtgcaccacctgtaatcccacacttaaggagctgctg
agcagaaattatcatgaactcaggccagcttgggctatgcagtagtcaga
aatataagcaagtcctcatcctcacaaatgagcaattaaagaagaaagag
gggaggggagcagcgaggctctgtagactttcttaagtgcaggtgatctg
gttctaccttggcctttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66433715_66434822
seq2: B6Ng01-119I20.b_49_1142

seq1  GAATTCAAACATCCTGAAAATTTTTAGATGACATGGCAGGTCATCTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACATCCTGAAAATTTTTAGATGACATGGCAGGTCATCTAAAT  50

seq1  GGACAATTACGTCTAGTTTACAAAGGGAATTCAAATCATTGTATTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTACGTCTAGTTTACAAAGGGAATTCAAATCATTGTATTTTTTT  100

seq1  TTTTGGTGTTATTTTGGTTTTTTGAATCAGGGTTTCTCTGTGTAGCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGTTATTTTGGTTTTTTGAATCAGGGTTTCTCTGTGTAGCCCTG  150

seq1  GCTGTCCTGGAACTTCTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTTCTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATC  200

seq1  CGCCTGCCTCTGCCTGGCTTCAAGTCATTGTTTTATTGAAGGAGTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCCTCTGCCTGGCTTCAAGTCATTGTTTTATTGAAGGAGTTTTTA  250

seq1  TTAATTTTTCTGTTCATGTATTTGATTGCTTTTTCCAATTTTAGTACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTCTGTTCATGTATTTGATTGCTTTTTCCAATTTTAGTACCTG  300

seq1  CACCAAGAAAAGAAGCTGCTTCATGGAGACATAAAGTCTTCAAATGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAAAAGAAGCTGCTTCATGGAGACATAAAGTCTTCAAATGTTGT  350

seq1  AATTAAAGGTGATTTTGAAACAATTAAAATCTGTGATGTAGGAGTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGGTGATTTTGAAACAATTAAAATCTGTGATGTAGGAGTCTCTC  400

seq1  TGCCATTGGATGAAAATATGACTGGTAAGTAGGATTGTTTTAAATTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGGATGAAAATATGACTGGTAAGTAGGATTGTTTTAAATTTATA  450

seq1  CAATTTTGCATTGTAAAACATAATAAACCTTCATGGTTTAAATGAACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGCATTGTAAAACATAATAAACCTTCATGGTTTAAATGAACTAT  500

seq1  TTTTGGAAACTAATAGTGTCTTTTCATTGTTTTGCCTCCTGAGTCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAACTAATAGTGTCTTTTCATTGTTTTGCCTCCTGAGTCCTCAG  550

seq1  CTCCTTCCCTTGCCACATGGTCAATTATTGACTTCTTGGTAGTGTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCCTTGCCACATGGTCAATTATTGACTTCTTGGTAGTGTGTATA  600

seq1  TTTTTTGTCTTTGACTTGTTTTAAATATGTCAGTTGGGCTCACAGGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTCTTTGACTTGTTTTAAATATGTCAGTTGGGCTCACAGGCCTC  650

seq1  CCAGTCTTCAGCCTGTGCCCGCACTGGCCCTTATTAGCATGGATTTTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTCAGCCTGTGCCCGCACTGGCCCTTATTAGCATGGATTTTAAC  700

seq1  TGAATAACTTTGGGCAAGACACACCCAATAGGCTAGAGCTTCCCCAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACTTTGGGCAAGACACACCCAATAGGCTAGAGCTTCCCCAGCTT  750

seq1  CTAGGCATTCTTATCTAATCACGTTAATCAGGATCCACTATTGCATCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATTCTTATCTAATCACGTTAATCAGGATCCACTATTGCATCTTC  800

seq1  CCTTTCCCCTTCAAATGTTTCTTCTCTACTTGTAATTTCATTGAAAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCCTTCAAATGTTTCTTCTCTACTTGTAATTTCATTGAAAGCCT  850

seq1  CAAAATAGAATTTTGAAGATAAACTTTGATTAAATAAACTGCTAGTTTTT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAAATAGAATTTTGAAGATAAACTTTGATT-AATAAACTGCTAGTTTTT  899

seq1  CTCCCTTATTGTTTGGAAGTGAGTATAAGCATTTTGTTTTGGTTCTATCC  950
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  CTCCCTTATTGTTTGGAAGTGAGTATAAGCA-TTTGTTTTGGGTCTATCC  948

seq1  TTATTTGTGTAAAATGGAGATTATAGTAATGAAATACAGAAAAACTAATA  1000
      |||||||||| |||||||||||||||||||||||||||| |||||| |||
seq2  TTATTTGTGT-AAATGGAGATTATAGTAATGAAATACAG-AAAACT-ATA  995

seq1  CACTTTAAAAACTGTCCAGTGCATTTGATTTATCTTAGTTACAGAATAGA  1050
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  CACTTTAAAAACTGTCCAGTGCATTTGATTTATCTTAG-TACAG-ATAGA  1043

seq1  ATTTTTAAACATGTAAAGCAAATTTTGCCTTAAGGAAGATATTATAGATA  1100
        |||| |||||||||||| |||||||| |||    ||||||||||||||
seq2  --TTTTTAACATGTAAAGC-AATTTTGCTTTA---GAGATATTATAGATA  1087

seq1  TAATACTT  1108
      | ||||||
seq2  T-ATACTT  1094

seq1: chr14_66548997_66550128
seq2: B6Ng01-119I20.g_67_1186 (reverse)

seq1  ATGAAAGGCAAAGTTAGAAACCAGATCACCTGCAC-TAAG-AGGTCTACA  48
      ||||||||| ||| ||| ||||||||||||||||| |||| | |||||| 
seq2  ATGAAAGGCCAAGGTAG-AACCAGATCACCTGCACTTAAGAAAGTCTAC-  48

seq1  AGAGCCTCGCTGCCTCCCTCCCCTTCCTTTCTTCTTTAATTTGCTCATTT  98
      |||||||||||||  |||||||||  ||||||||||||| ||||||| ||
seq2  AGAGCCTCGCTGCTCCCCTCCCCT--CTTTCTTCTTTAA-TTGCTCA-TT  94

seq1  TGTTGAGATGA-GACTTTTGCCTTATATTTCTGACTTACTGCATAGCCCA  147
      |||   ||||| |||||    |||||||||||||| ||||||||||||||
seq2  TGTGAGGATGAGGACTT---GCTTATATTTCTGAC-TACTGCATAGCCCA  140

seq1  AGCTGGCCTCGAGTTCATGATAATTCTCCTGCCTCAGCAGCTTCCTAAGT  197
      ||||||||| ||||||||||||||  | ||| |||||||||| | |||||
seq2  AGCTGGCCT-GAGTTCATGATAAT--TTCTG-CTCAGCAGCTCCTTAAGT  186

seq1  GTTGGGATTACAGGT-GTGCACCACTAAGCTTAGCTTAGAATTTCTTAAA  246
      | ||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  G-TGGGATTACAGGTGGTGCACCACTAAGCTTAGCTTAGAATTTC-TAAA  234

seq1  CACTAAAAATTATTTATTTTTATTTGTGTATAGCACATGTGTGCATGTAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAATTATTTATTTTTATTTGTGTATAGCACATGTGTGCATGTAC  284

seq1  CTGTGGAGTCCAGAAGAGGGCTTTGGATCTCCTGAAGTTAGCGTGACAAG  346
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGTGGAGTCCAGAAGAGAGCTTTGGATCTCCTGAAGTTAGCGTGACAAG  334

seq1  TGTCAGCCTCTTTATGTGGGTGCAGGGAACTGAACCGGGGCCTCTGGAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCTCTTTATGTGGGTGCAGGGAACTGAACCGGGGCCTCTGGAAG  384

seq1  AGCAGCGTGTGGTTTAATCACTGAGCCATCGCTCCAGATCCTCAAAGGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGTGTGGTTTAATCACTGAGCCATCGCTCCAGATCCTCAAAGGCA  434

seq1  TTTCTTAGAGTTGCCTGCTGCCCTGGGAATTGGTTAAAGGATGATTTTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGAGTTGCCTGCTGCCCTGGGAATTGGTTAAAGGATGATTTTGG  484

seq1  CAATCTATTTTCCTATCTAGCATCTTCTTTCTAGCATCCTCTATCTAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATTTTCCTATCTAGCATCTTCTTTCTAGCATCCTCTATCTAATG  534

seq1  GACACACTCTTGGAGATTTCCCTAACATCAGATGCTCTTGTATTCAACAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTCTTGGAGATTTCCCTAACATCAGATGCTCTTGTATTCAACAA  584

seq1  TAACCAGAGTCCCTGGAGAGGTCTGCCCAGCCCTCCTCTTACCTCGGATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGAGTCCCTGGAGAGGTCTGCCCAGCCCTCCTCTTACCTCGGATG  634

seq1  ACGGTGACATTGCGAAGGATTTCTCCGTGGTGTGTGTCCACAGCCTTCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGACATTGCGAAGGATTTCTCCGTGGTGTGTGTCCACAGCCTTCAT  684

seq1  TTCCTCCATGATCATGGAGAGGTTTCGGACATTGAAGTCTAACCGGGCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCATGATCATGGAGAGGTTTCGGACATTGAAGTCTAACCGGGCAC  734

seq1  TGAGCAGACTGAAGCGCTCCCTGAGCAGATCTGTGGTGCCCAGCATGAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGACTGAAGCGCTCCCTGAGCAGATCTGTGGTGCCCAGCATGAGG  784

seq1  GAGACGGATTTATTCAGGTAGTAGAGCTCTTCAGCATGGGTGTGGAAGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGATTTATTCAGGTAGTAGAGCTCTTCAGCATGGGTGTGGAAGCC  834

seq1  CAGTGTGCAAGACAGCCGCACGTCGTCCAGGTACTTGAGCATGCTGTGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGCAAGACAGCCGCACGTCGTCCAGGTACTTGAGCATGCTGTGCA  884

seq1  CGTGGTTGTCGGTGGCATTGATATTGGTGAAGATAGTGCCGATTTCAATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTTGTCGGTGGCATTGATATTGGTGAAGATAGTGCCGATTTCAATC  934

seq1  TCATGAGAAGCCATACGTCCTTCCAGAGACTCGAACCTTTCCACTGTGCG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGAAGCCATACGTCCTTCCAGAGACTCGAACCTTTCCACTGTGCG  984

seq1  ATTCTGGGCATATCGGGTGTGGTATTGGAGGTCATGCATGTTCTCCTCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGCATATCGGGTGTGGTATTGGAGGTCATGCATGTTCTCCTCAT  1034

seq1  GGTCATCCAAAAAGGAAGAGATGTTGTCCAGCTGTAGCTGTAGGCCCATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCCAAAAAGGAAGAGATGTTGTCCAGCTGTAGCTGTAGGCCCATG  1084

seq1  ACCTGCAGAACCAAGTCATGCATGCTCTCAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGAACCAAGTCATGCATGCTCTCAGAATTC  1120