BAC Information

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BAC

Clone NameB6Ng01-120E14
Chromosome14 (Build37)
Map Location 30,908,538 - 30,909,680
singlet/doubletsinglet
Overlap geneCacna1d
Upstream geneCacna2d3, Ppia-ps15, EG665431, Selk, Actr8, Il17rb, Chdh
Downstream geneLOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120E14.bB6Ng01-120E14.g
ACCDH924269DH924270
length1,1361,209
definitionDH924269|Mus musculus domesticus DNA, BAC clone: B6Ng01-120E14, 5' end.DH924270|Mus musculus domesticus DNA, BAC clone: B6Ng01-120E14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcgagtctggcactttgaaattaaatttagatattttaattta
attttacgtgtgtgagtgtttgctgccatgtacgtatgggcaccatgtgt
gagcctggtgcccacagaagtcagaagagggcttctggaactggagttat
gggtaacggtgagccatcgtgtaggcgccgggaaccgaacccaggttctc
tgtaagaacaagtgctcctaaccttcaagctgtctctctagccctaaagt
ctgacactttggtctaaacctgccccagcggcactaaatattgaaaagga
aaaccgaaattacattcctgactttaggggctcctggtgcggtagtgcgt
gatttcctagtttttgcaatattgccctgaattacagcaacttcttgctg
atcctgaccaagtcagattgcagagcagtgatgacagtgaacctttaaga
agttattgtctgatagatatgacactaggtcaggaagccaggaccaaggt
ctacaaccagattctgtccaggcttgaagaacttaagcaattcaaaccct
ccgtttctcagtagaagccaggcccatagtcaagcaacattttcagacac
tgttttacactttataatgaaaaggtctgtgtgctgatctgggggagagt
gtgaagcccagtaatactccctttaatgagacataaacctaaatagtata
agatttatcactactcaaactctacctttacccatcatatctgcagtgtg
ttagacaaggacctgagagatattcccaacagagaaagggtggcttcccc
ttatcctgaactgaaagaatgggcatttatttcctccatcatcggaacat
cctcattgtgtcatgaaccaccaccaccccccacaacctccccatgttta
ggggaagttcaccatatgacctttgcagtgtactggcttgaatgttggca
gaagatgctgtacagaggtgggaaatgaccctgggtgcaatgtcaaggga
tctcccattgcacagatgagatcgggaggttttgacatcagtacctctgc
cttcatccacagcactatgagcagtcaagatgtcattgaatggcatggaa
ttctgaacatgggtcttccaaggtcttcactgttga
gaattccaggaaaacacaaccaaacaggtagaagacattaaagaggaagc
acaaaaatcgcttaaagaaatgcaggaaaacacaaccaaacaagtgatgt
aattgaataaaagcatccaagacctaaaaagggaagtagacacaataaag
aaaacccaaagtgaggcaacgctggagatagaaaccctaggaaagaaatc
tggaaccatagattcgagcatcagcaatagaatagaagagatggaagaga
gaatctcaggtgcagaagattccatagagaacatcagcacaacaatcaaa
gaaaatggaaaatgcaaaaagatcctaactcaaaacatccaggaaatcca
ggacacaatgagaagaccaaacctacgaataataagagtggatgaaaatg
aagattttcaactcaaaggaccagcaaatatcttcaacaaaattatagaa
gaaaacttcccaaatctaaagaaagagatgcccatgaacatacaagaagc
ctacagaactccaaatagactggaccagaaaagaaattcctcccgacaca
taataatcagaacaacaaatgcactaaataaagatagaatactaaaagca
gtaaggggaaaaggtcaagtaacatataaaggcaagcctatcagaattac
accagatttttcaccagagactatgaaagccagaagagcctggatagatg
ttatacagacactaagagaacacaaattccagcccaggctactataccca
gccaaactctcaattaccatagatggagaaaccaaagtattccacgacaa
aaccaaattcacacattatctttccacgaatccagcccttcaaaggataa
tacagaaaaaaaccaatacaaggacggaaaccacgccctagaaaagcaag
agatatccctcaacaaacctaaaagagacagccacagaacagatgcactt
tacacaaaatacaggaagcacaattactttcctatatctcttatatcatg
gactcactccccataaaagataaagactaacaaactggctacacaaacag
accaacattgtgctgcttacagaaactcatctcaaagagaaagatagaac
ctactcggaatgaagctagaaacattcagcatgtctgaagaacagctgga
atgcatcattctacatccactccacccaagttatcaagacacggggggca
ttctatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30908538_30909680
seq2: B6Ng01-120E14.b_46_1181 (reverse)

seq1  TCAACAGTGAAGACCCCTGTGAAGA-CCATGTTCAGAATGTCCATGGCA-  48
      |||||||||||||  |||  ||||| ||||||||||||| |||||| || 
seq2  TCAACAGTGAAGA--CCTTGGAAGACCCATGTTCAGAAT-TCCATGCCAT  47

seq1  TCATTGAACATCTTGGACTGCTCATAGTGCTGTGGATGAAGGCAGAGGTA  98
      ||| || ||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAATG-ACATCTT-GACTGCTCATAGTGCTGTGGATGAAGGCAGAGGTA  95

seq1  CTGATGTCAAAACCTCACGATCTCATCTGTGCAATGGGAGATCCCCTGAC  148
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  CTGATGTCAAAACCTCCCGATCTCATCTGTGCAATGGGAGATCCCTTGAC  145

seq1  ATTTGCACCCCAGGGTCATTTCCCACCCTCTTGTACAGCATCTTCTGCCA  198
      | ||||| ||||||||||||||||| |||| |||||||||||||||||||
seq2  A-TTGCA-CCCAGGGTCATTTCCCA-CCTC-TGTACAGCATCTTCTGCCA  191

seq1  ACATTCAAGCCAGTACACTGCAAAGGTCATATGGTGAACTTCCCCTAAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAAGCCAGTACACTGCAAAGGTCATATGGTGAACTTCCCCTAAAC  241

seq1  ATGGGGAGGTTGTGGGGGGTGGTGGTGGTTCATGACACAATGAGGATGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAGGTTGTGGGGGGTGGTGGTGGTTCATGACACAATGAGGATGTT  291

seq1  CCGATGATGGAGGAAATAAATGCCCATTCTTTCAGTTCAGGATAAGGGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGATGGAGGAAATAAATGCCCATTCTTTCAGTTCAGGATAAGGGGA  341

seq1  AGCCACCCTTTCTCTGTTGGGAATATCTCTCAGGTCCTTGTCTAACACAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCCTTTCTCTGTTGGGAATATCTCTCAGGTCCTTGTCTAACACAC  391

seq1  TGCAGATATGATGGGTAAAGGTAGAGTTTGAGTAGTGATAAATCTTATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATATGATGGGTAAAGGTAGAGTTTGAGTAGTGATAAATCTTATAC  441

seq1  TATTTAGGTTTATGTCTCATTAAAGGGAGTATTACTGGGCTTCACACTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGTTTATGTCTCATTAAAGGGAGTATTACTGGGCTTCACACTCT  491

seq1  CCCCCAGATCAGCACACAGACCTTTTCATTATAAAGTGTAAAACAGTGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGATCAGCACACAGACCTTTTCATTATAAAGTGTAAAACAGTGTC  541

seq1  TGAAAATGTTGCTTGACTATGGGCCTGGCTTCTACTGAGAAACGGAGGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTTGCTTGACTATGGGCCTGGCTTCTACTGAGAAACGGAGGGT  591

seq1  TTGAATTGCTTAAGTTCTTCAAGCCTGGACAGAATCTGGTTGTAGACCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGCTTAAGTTCTTCAAGCCTGGACAGAATCTGGTTGTAGACCTT  641

seq1  GGTCCTGGCTTCCTGACCTAGTGTCATATCTATCAGACAATAACTTCTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGCTTCCTGACCTAGTGTCATATCTATCAGACAATAACTTCTTA  691

seq1  AAGGTTCACTGTCATCACTGCTCTGCAATCTGACTTGGTCAGGATCAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCACTGTCATCACTGCTCTGCAATCTGACTTGGTCAGGATCAGCA  741

seq1  AGAAGTTGCTGTAATTCAGGGCAATATTGCAAAAACTAGGAAATCACGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGCTGTAATTCAGGGCAATATTGCAAAAACTAGGAAATCACGCA  791

seq1  CTACCGCACCAGGAGCCCCTAAAGTCAGGAATGTAATTTCGGTTTTCCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGCACCAGGAGCCCCTAAAGTCAGGAATGTAATTTCGGTTTTCCTT  841

seq1  TTCAATATTTAGTGCCGCTGGGGCAGGTTTAGACCAAAGTGTCAGACTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTTAGTGCCGCTGGGGCAGGTTTAGACCAAAGTGTCAGACTTT  891

seq1  AGGGCTAGAGAGACAGCTTGAAGGTTAGGAGCACTTGTTCTTACAGAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAGAGAGACAGCTTGAAGGTTAGGAGCACTTGTTCTTACAGAGAA  941

seq1  CCTGGGTTCGGTTCCCGGCGCCTACACGATGGCTCACCGTTACCCATAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTCGGTTCCCGGCGCCTACACGATGGCTCACCGTTACCCATAAC  991

seq1  TCCAGTTCCAGAAGCCCTCTTCTGACTTCTGTGGGCACCAGGCTCACACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCCAGAAGCCCTCTTCTGACTTCTGTGGGCACCAGGCTCACACA  1041

seq1  TGGTGCCCATACGTACATGGCAGCAAACACTCACACACGTAAAATTAAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCATACGTACATGGCAGCAAACACTCACACACGTAAAATTAAAT  1091

seq1  TAAAATATCTAAAATTAATTTCAAAGTGCCAGACTCGAAGAATTC  1143
      ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAAATATCTAAATTTAATTTCAAAGTGCCAGACTCGAAGAATTC  1136