BAC Information

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BAC

Clone NameB6Ng01-120G20
Chromosome14 (Build37)Y (Build37)
Map Location 114,178,262 - 114,179,245248,371 - 248,465
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120G20.bB6Ng01-120G20.g
ACCDH924375DH924376
length985110
definitionDH924375|Mus musculus domesticus DNA, BAC clone: B6Ng01-120G20, 5' end.DH924376|Mus musculus domesticus DNA, BAC clone: B6Ng01-120G20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,178,262 - 114,179,245)(248,371 - 248,465)
sequence
gaattctgtcatagttttaaatattttaactgataaatggagggtagact
gtacagtgaaatgcatatttttattagggtttggtctagtgctgctatgt
attcaaaggctaaatactggccactaagatctggtaggcaccatgagcag
atcctcatgtccaccaagtaacgctatgtaaactttactccccaatctaa
agtttttggttaaatacatttggctacagacaattgctggggtgaatagc
tatagacaaaatttcagttacagggcaagggtagcaggcaaggatgatga
tgagagagaaggagaagaatggagacagagagaagaggaggtctctatta
gatggggagggccaggagcacttggcccagtgaactgtctcttgaggaca
gactgatggacggaaataacccaggctaaactctaaaagcaagtactagg
ggagcacagatgagaagaattctgccatatagaaatgtagggtaatcctc
cagtaatagtgcttgactgaataaataaatctacaggacactgcctcgat
tactgggggggggggggctagttatctcataacatattttgttatatgta
tggattatagaaagatggaatcatgttacttagcatatttgccacattat
taacattaggttgtaggtctggtgatactgctaatgaactctttcttttg
tcaattatgccacatatgattattaactgcaacagatcacggaaaggcaa
ctctgaaagtcaaactgaaaggtgggatcatttaaacttcttttcccact
tgatttctgtttctactctctttcaaaaaaaacgactttttagattccag
aaagatatgaaatcttagtatatttgtctatggtgcctgacatatatttc
acttatcttttcagactatatagtagccttcctttctctgtctctgactg
tatccctccctttcctcctccctctcttctctctg
actctgtagaacaggctggcctcgaactcagaaatcctcttccctctgca
tcccaagtgctgggattaaaggcgtgtgccaccactgcccagtaggatat
gctcttttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114178262_114179245
seq2: B6Ng01-120G20.b_49_1033 (reverse)

seq1  CAGAGAGAAGAGAGGGAGGGAGGAAGGGAGGGAGACAGACAGAGACAGAA  50
      |||||||||||||||||||  | |||||||||| |||| ||||||||| |
seq2  CAGAGAGAAGAGAGGGAGGAGGAAAGGGAGGGATACAGTCAGAGACAG-A  49

seq1  GAAAGGAAGGCTACTATATAGTCTGAAAAGATAAGTGAAATATATGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGGCTACTATATAGTCTGAAAAGATAAGTGAAATATATGTCAG  99

seq1  GCACAATAGACAAATATACTAAGATTTCATATCTTTCTGGAATCTAAAAA  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATAGACAAATATACTAAGATTTCATATCTTTCTGGAATCTAAAAA  149

seq1  GTCGTTTTTTTTGAAAGAGAGTAGAAACAGAAATCAAGTGGG-AAAGAAG  199
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCGTTTTTTTTGAAAGAGAGTAGAAACAGAAATCAAGTGGGAAAAGAAG  199

seq1  TTTAAATGATCCCACCTTTCAGTTTGACTTTCAGAGTTGCCTTTCCGTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGATCCCACCTTTCAGTTTGACTTTCAGAGTTGCCTTTCCGTGA  249

seq1  TCTGTTGCAGTTAATAATCATATGTGGCATAATTGACAAAAG-AAGAGTT  298
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTGTTGCAGTTAATAATCATATGTGGCATAATTGACAAAAGAAAGAGTT  299

seq1  CATTAGCAGTATCACCAGACCTACAACCTAATGTTAATAATGTGGCAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCAGTATCACCAGACCTACAACCTAATGTTAATAATGTGGCAAAT  349

seq1  ATGCTAAGTAACATGATTCCATCTTTCTATAATCCATACATATAACAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGTAACATGATTCCATCTTTCTATAATCCATACATATAACAAAA  399

seq1  TATGTTATGAGATAACTAGCCCCCCCCCCCCCAGTAATCGAGGCAGTGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATGAGATAACTAGCCCCCCCCCCCCCAGTAATCGAGGCAGTGTC  449

seq1  CTGTAGATTTATTTATTCAGTCAAGCACTATTACTGGAGGATTACCCTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATTTATTTATTCAGTCAAGCACTATTACTGGAGGATTACCCTAC  499

seq1  ATTTCTATATGGCAGAATTCTTCTCATCTGTGCTCCCCTAGTACTTGCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATATGGCAGAATTCTTCTCATCTGTGCTCCCCTAGTACTTGCTT  549

seq1  TTAGAGTTTAGCCTGGGTTATTTCCGTCCATCAGTCTGTCCTCAAGAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTTAGCCTGGGTTATTTCCGTCCATCAGTCTGTCCTCAAGAGAC  599

seq1  AGTTCACTGGGCCAAGTGCTCCTGGCCCTCCCCATCTAATAGAGACCTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTGGGCCAAGTGCTCCTGGCCCTCCCCATCTAATAGAGACCTCC  649

seq1  TCTTCTCTCTGTCTCCATTCTTCTCCTTCTCTCTCATCATCATCCTTGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCTGTCTCCATTCTTCTCCTTCTCTCTCATCATCATCCTTGCC  699

seq1  TGCTACCCTTGCCCTGTAACTGAAATTTTGTCTATAGCTATTCACCCCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCCTTGCCCTGTAACTGAAATTTTGTCTATAGCTATTCACCCCAG  749

seq1  CAATTGTCTGTAGCCAAATGTATTTAACCAAAAACTTTAGATTGGGGAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTCTGTAGCCAAATGTATTTAACCAAAAACTTTAGATTGGGGAGT  799

seq1  AAAGTTTACATAGCGTTACTTGGTGGACATGAGGATCTGCTCATGGTGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTACATAGCGTTACTTGGTGGACATGAGGATCTGCTCATGGTGCC  849

seq1  TACCAGATCTTAGTGGCCAGTATTTAGCCTTTGAATACATAGCAGCACTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGATCTTAGTGGCCAGTATTTAGCCTTTGAATACATAGCAGCACTA  899

seq1  GACCAAACCCTAATAAAAATATGCATTTCACTGTACAGTCTACCCTCCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAACCCTAATAAAAATATGCATTTCACTGTACAGTCTACCCTCCAT  949

seq1  TTATCAGTTAAAATATTTAAAACTATGACAGAATTC  984
      ||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTTAAAATATTTAAAACTATGACAGAATTC  985

seq1: chrY_248371_248465
seq2: B6Ng01-120G20.g_76_181

seq1  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCTTCCC  50
      |||||| |||||||||||||||||||||||||| | | ||||||| ||||
seq2  TGTAGAACAGGCTGGCCTCGAACTCAGAAATCCTCTTCCCTCTGCATCCC  50

seq1  AAGTGCTGGGATTAAAGGAGTGCGCCACCACTGCCCAG-----------C  89
      |||||||||||||||||| ||| |||||||||||||||           |
seq2  AAGTGCTGGGATTAAAGGCGTGTGCCACCACTGCCCAGTAGGATATGCTC  100

seq1  TTTTAG  95
      ||||||
seq2  TTTTAG  106