BAC Information

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BAC

Clone NameB6Ng01-120M01
Chromosome14 (Build37)17 (Build37)
Map Location 80,499,638 - 80,500,02193,046,868 - 93,047,937
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120M01.bB6Ng01-120M01.g
ACCDH924613DH924614
length9271,056
definitionDH924613|Mus musculus domesticus DNA, BAC clone: B6Ng01-120M01, 5' end.DH924614|Mus musculus domesticus DNA, BAC clone: B6Ng01-120M01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,499,638 - 80,500,021)(93,046,868 - 93,047,937)
sequence
gaattcctatactttccatgacttttatcatgaagcggtgttggaaaaat
gttcaacatctttaaacatcagagaaatgcaaatcaaaacaaccctgaga
ttccacctcatgccagtcagaatggctaggatcaaaaattcaggtgacag
aagatgatgtcgaggatgtggagaaagaggaacactcctccattgctggt
gagattgaaagcttgtacaaccactctggaaatcagtctggtggttcctc
agaaaactggacatagtactataggtagatccagcaatacctcttctggg
gatatccagaagatgttccaactggtaatgaggacacatgttccactatg
ttcatagcatccctatttataatagccaaaagctggaaagaacacagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaacaataaatttatgaaatttttggtaaat
ggttgtatctggaggatatcatcctgagtgaggtaacccaataacagaag
aagtcacttggtatgcactcactgataaatggatattagcccagtgtggg
gagccgcactcacatttgccattataagatggcgctgacagctgtgttct
aagtagtaaataatctgcacatgtgcaggggcagttttcccgccatgtgc
tctgcctttctcgtgatgacaactgggccgatgggctgcagccaaccagg
gaatgacacatcctagcaaaggataattctccttaaaagggacggggttc
tggcactccccctcttcgcctctttgtctcttcgtctcttcacctcttcg
tctcttcatctttcgtctcttttctcttcgtcttttccactgctctcttc
tctgctctctgcctctctcactctctg
gaattccagagatatatatcctagaaaggagaacaggaagatcagaatac
aggacaccattttcaacaaatgctactggcacaactggcggttatcttgt
agaagaatgtgaattgatccattcttatctccttgtactaaggtcaaatc
taagtggattgaggaaatccacataaaaccagagacactgaaacttatag
aggagaaagtagggaaaagtctcgaagatatgggtacaggggaaaaaaaa
ttcctgaatagaacagcaatggcttgtgctataagatcgagaatccacaa
atgggacctcataaaattgcaaagcttctgcaaggcaaaagacactgtca
ataagacaaaaggccaccaaatcagataggggactaatacccaatatata
taaagaacacagatctcctagttctctatctctaaagcaaaacatttgag
cctagttactcaaggaaagctttattggctcatgatttaaaatcaaaaca
tcatgacatcatcatcaatccaaagatcccccaactgtgttaaaatgtgg
taaaaatgaatgtaaatggccacaagcagaagagtccaagtacatggaat
cagaacagcagagttagaagttgaaatctattcctgctagaagatttagt
ctatttataaggacggaatccaatggtataacatataccactgggatcca
ctgcttaatgtctttattacttcagcagtgccataaaaagtaataaagct
ctaaagcatatatctgaatacagaaaccaaaactacatcacaggaatgca
aatgtccttataccaggctcaaaaacattacatgttctataaatacttca
ttttttgtgtgtcagcaagagctgaaaatagtgggaaaatagtattcttc
ataagtataatcatgggttaatgagatggctgagaaataaaggctctgtt
accaagctgatgacctgagttccacccttagcacgacatgataaagaaag
actgactcctgaactatcttcactgccattattctatggtagcacattgt
ctgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80499638_80500021
seq2: B6Ng01-120M01.b_205_585 (reverse)

seq1  ATTGGGTTACCTCACTCAGGATGATACCCTCCAGATCCATCTATTTGCCT  50
      |||||||||||||||||||||||||| ||||||||| || | |||| || 
seq2  ATTGGGTTACCTCACTCAGGATGATATCCTCCAGATACAACCATTTACC-  49

seq1  AGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTATTACTCCATTGT  100
      |  ||||||||||||| ||| ||||||||||||||||| |||||||||||
seq2  AAAAATTTCATAAATTTATTGTTTTTAATAGCTGAGTAGTACTCCATTGT  99

seq1  GTAAATGTACCACATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGG  150
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGT  149

seq1  GTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTG  200
      |||||||||||||| ||||||||||||||| || ||||||||||||||||
seq2  GTTCTTTCCAGCTTTTGGCTATTATAAATAGGGATGCTATGAACATAGTG  199

seq1  GAGCATGTTTCCTTCTTATCGGTTGGAACATCTTCTGGATATATGCCCAG  250
      || ||||| ||||  ||| | |||||||||||||||||  |||| |||||
seq2  GAACATGTGTCCTCATTACCAGTTGGAACATCTTCTGG--ATATCCCCAG  247

seq1  GAGAGGTATTGTGGGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGA  300
       ||||||||||  |||||  |   |||||||||||||| |||||||||||
seq2  AAGAGGTATTGCTGGATCTACCTATAGTACTATGTCCAGTTTTCTGAGGA  297

seq1  ACTGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAA  350
      ||  ||||||||||||||||||||||||||||||||| ||||| ||||| 
seq2  ACCACCAGACTGATTTCCAGAGTGGTTGTACAAGCTTTCAATCTCACCAG  347

seq1  TAATGGAGGAGTGTTCCTCTTTCTCCACATCCTC  384
       |||||||||||||||||||||||||||||||||
seq2  CAATGGAGGAGTGTTCCTCTTTCTCCACATCCTC  381

seq1: chr17_93046868_93047937
seq2: B6Ng01-120M01.g_68_1123

seq1  GAATTCCAGAGATATATATCCTAGAAAGGAGAACAGGAAGATCAGAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGATATATATCCTAGAAAGGAGAACAGGAAGATCAGAATAC  50

seq1  AGGACACCATTTTCAACAAATGCTACTGGCACAACTGGCGGTTATCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACCATTTTCAACAAATGCTACTGGCACAACTGGCGGTTATCTTGT  100

seq1  AGAAGAATGTGAATTGATCCATTCTTATCTCCTTGTACTAAGGTCAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGTGAATTGATCCATTCTTATCTCCTTGTACTAAGGTCAAATC  150

seq1  TAAGTGGATTGAGGAAATCCACATAAAACCAGAGACACTGAAACTTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATTGAGGAAATCCACATAAAACCAGAGACACTGAAACTTATAG  200

seq1  AGGAGAAAGTAGGGAAAAGTCTCGAAGATATGGGTACAGGGGAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAGTAGGGAAAAGTCTCGAAGATATGGGTACAGGGGAAAAAAAA  250

seq1  TTCCTGAATAGAACAGCAATGGCTTGTGCTATAAGATCGAGAATCCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAATAGAACAGCAATGGCTTGTGCTATAAGATCGAGAATCCACAA  300

seq1  ATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGACACTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGACACTGTCA  350

seq1  ATAAGACAAAAGGCCACCAAATCAGATAGGGGACTAATACCCAATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAAAAGGCCACCAAATCAGATAGGGGACTAATACCCAATATATA  400

seq1  TAAAGAACACAGATCTCCTAGTTCTCTATCTCTAAAGCAAAACATTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACACAGATCTCCTAGTTCTCTATCTCTAAAGCAAAACATTTGAG  450

seq1  CCTAGTTACTCAAGGAAAGCTTTATTGGCTCATGATTTAAAATCAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTACTCAAGGAAAGCTTTATTGGCTCATGATTTAAAATCAAAACA  500

seq1  TCATGACATCATCATCAATCCAAAGATCCCCCAACTGTGTTAAAATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACATCATCATCAATCCAAAGATCCCCCAACTGTGTTAAAATGTGG  550

seq1  TAAAAATGAATGTAAATGGCCACAAGCAGAAGAGTCCAAGTACATGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGAATGTAAATGGCCACAAGCAGAAGAGTCCAAGTACATGGAAT  600

seq1  CAGAACAGCAGAGTTAGAAGTTGAAATCTATTCCTGCTAGAAGATTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGCAGAGTTAGAAGTTGAAATCTATTCCTGCTAGAAGATTTAGT  650

seq1  CTATTTATAAGGACGGAATCCAATGGTATAACATATACCACTGGGATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATAAGGACGGAATCCAATGGTATAACATATACCACTGGGATCCA  700

seq1  CTGCTTAATGTCTTTATTACTTCAGCAGTGCCATAAAAAGTAATAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAATGTCTTTATTACTTCAGCAGTGCCATAAAAAGTAATAAAGCT  750

seq1  CTAAAGCATATATCTGAATACAGAAACCAAAACTACATCACAGGAATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCATATATCTGAATACAGAAACCAAAACTACATCACAGGAATGCA  800

seq1  AATGTCCTTATACCAGGCTCAAAAACAATTACATGTTCTATAAATACTTC  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATGTCCTTATACCAGGCTCAAAAAC-ATTACATGTTCTATAAATACTTC  849

seq1  ATTTTTTGTGTGTCAGCAAGAGCTGAAAAATAGTGGGAAAATAGTATTCT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTTTTTGTGTGTCAGCAAGAGCTG-AAAATAGTGGGAAAATAGTATTCT  898

seq1  TCATAAGTAATAATCATGGGTTAATGAGATGGCTGAGAAAATAAAGGCTC  950
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  TCATAAGT-ATAATCATGGGTTAATGAGATGGCTGAG-AAATAAAGGCTC  946

seq1  TGGTTACCAAGCCTGATGACCTGAGTTCCACCCTTAGCACCGACATGATA  1000
      | ||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  T-GTTACCAAG-CTGATGACCTGAGTTCCACCCTTAGCA-CGACATGATA  993

seq1  AAAGGAAAGAACTGACTCCTGAACTATCCTTTCACTGCCCCATTATTCTA  1050
      ||  ||||| ||||||||||||||||||  |||||||  |||||||||||
seq2  AA--GAAAG-ACTGACTCCTGAACTATC--TTCACTG--CCATTATTCTA  1036

seq1  TGGTAGGCACA-TGTCTGTAA  1070
      ||||| ||||| |||||||||
seq2  TGGTA-GCACATTGTCTGTAA  1056