BAC Information

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BAC

Clone NameB6Ng01-121H19
Chromosome18 (Build37)14 (Build37)
Map Location 30,302,100 - 30,303,0747,932,442 - 7,933,355
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040930, 4930578E11Rik, LOC666073
Downstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121H19.bB6Ng01-121H19.g
ACCDH925158DH925159
length9751,060
definitionDH925158|Mus musculus domesticus DNA, BAC clone: B6Ng01-121H19, 5' end.DH925159|Mus musculus domesticus DNA, BAC clone: B6Ng01-121H19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,302,100 - 30,303,074)(7,932,442 - 7,933,355)
sequence
gaattcaactctgctaggctaaggccttatttctgtgtcgtggagaaaga
aagactagttttaagtgaacttcggtgcagttatttaagcaactcagact
caagaaaatgagatgcagcttagcatacatagcaacagagtcacccacac
tcaagagacaacaaacacagaaaggtcaattgaccttgcaataatatttg
tggactttctcaacgcaaagattagtggttccttaaagcaaagatataaa
tactagcccatgaccattatcaagaaaaaacacacatctccactttcttg
gccttatcagatcaattttaagtaggtttatctcggacttctctaacatt
taatgaggagcaaattgtttttttttctccctctctttctgtttcctcta
cccatgttgactttttgatattacctaggagaaaacaattaaaataaatg
ggtctctgacagagtgttaatttggttgtcactgaagaaattggaaaggt
tcactttatggctgattcctcttgtttcacagtttatcataagtacttag
actgaacagaggcccttttagatgagaaagagtttaactctttttcagct
tcttcctcaaccttcacataagaacccacctgaacaggcttagcttgaca
tgaatccactctctttccaatagctcccagtctacgtcaatcagaatcac
aaaatacatgaataagttcagtactcattgcttaaaatatgcccaagcag
cttagtgctgaacaaagccaggatgtagcccatttttaaactctatggaa
aatggggagaaaatgaagtcaatttaccatagcttcctgatgatatatgt
acatatatatatgtacatatacggctacatatacacagtcaaatacatat
gtgtatatagtcaagaagctatggttcataagctctctctctctcacgct
ttcgctttctctctctctcgctctg
gaattctttttcagctgtaaagagtaaaatctcaccatcaagaaaaggat
ggaagtgggtggagatcattatcctacagatctggataaacgctgagcat
ctcgtcacatgatgattctaggtgtgtgtgagtgtgtgtgtgtgtgtgtg
accagaatatagagagagtcacacacacacacacacatgcatgcacacag
aatcagggtgtgtttgcagggagaatgagaaagtacaattgaaatagaat
ccagaggaaatgcagaggacattctgtttataagacccaaaatctgagaa
gagtattaatgagcccaagaccttccatcatgtatcaggatggaccaaat
gggaccaagctttcctggtgatatagcaagcttcagcaagcaacacctgc
cagacaattacaaagctttgcaaacaaacaaacaacgaactcaagcaagc
aaacaatcaatcaaaacctcacagcaactaatatctcactcaaacggtca
catgtcagtgcctctatcaatacatgctgagacatcacatcctcttcaat
ccctcagttgtaggctttcattttcatataaaaaaaatagaataccctat
gtcctcagctcactcctgctctgacttcaagttcagcctgtgagaatgtt
tagggagaaaaggttgggcacagtgacaccctgaagttacagtctcccag
taccataaaatttaataagaataaatttgtaggccataccatagacccca
gaaattgaccatgatgtttgacagaaatgaaaaataactcttgtgcaaag
ctttctcactgatgaagatcaggtggatcttggtagctcttttttcccac
tgggtcatcggctgactgattagactttccactttcctcacccatcttct
gacaggagtgttggggatgatggtggtacaccagcagcccccatgggttg
agaaccaatggaatttgatactgtcaggcacagagctttgaataaacact
gagtctatacgacattctgacaaaacaggatggcaggtgaccagtcattc
cctcttcgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30302100_30303074
seq2: B6Ng01-121H19.b_46_1020

seq1  GAATTCAACTCTGCTAGGCTAAGGCCTTATCACTGTGTCGTGGAGAAAGA  50
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  GAATTCAACTCTGCTAGGCTAAGGCCTTATTTCTGTGTCGTGGAGAAAGA  50

seq1  AAGACTAATTTTAAGTGAACTTCGGTGCAATTATTTAAGCAACTCAGACT  100
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGACTAGTTTTAAGTGAACTTCGGTGCAGTTATTTAAGCAACTCAGACT  100

seq1  CAAGAAAATGAGATGCAGCTTAGCATACATAGCAACAGAGTCACCCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATGAGATGCAGCTTAGCATACATAGCAACAGAGTCACCCACAC  150

seq1  TCAAGAGACAACAAACACAGAAAGGTCAATTGACCTTGCAATAATATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGACAACAAACACAGAAAGGTCAATTGACCTTGCAATAATATTTG  200

seq1  TGGACTTTCTCAACGCAAAGATTAGTGGTTCCTTAAAGCAAAGATATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTCTCAACGCAAAGATTAGTGGTTCCTTAAAGCAAAGATATAAA  250

seq1  TACTAGCCCATGACCATTATCAAGAAAAAACACACATCTCCACTTTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCCCATGACCATTATCAAGAAAAAACACACATCTCCACTTTCTTG  300

seq1  GCCTTATCAGATCAATTTTAAGTAGGTTTATCTCGGACTTCTCTAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATCAGATCAATTTTAAGTAGGTTTATCTCGGACTTCTCTAACATT  350

seq1  TAATGAGGAGCAAATTGTTTTTTTTTCTCCCTCTCTTTCTGTTTCCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGAGCAAATTGTTTTTTTTTCTCCCTCTCTTTCTGTTTCCTCTA  400

seq1  CCCATGTTGACTTTTTGATATTACCTAGGAGAAAACAATTAAAATAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTGACTTTTTGATATTACCTAGGAGAAAACAATTAAAATAAATG  450

seq1  GGTCTCTGACAGAGTGTTAATTTGGTTGTCACTGAAGAAATTGGAAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGACAGAGTGTTAATTTGGTTGTCACTGAAGAAATTGGAAAGGT  500

seq1  TCACTTTATGGCTGATTCCTCTTGTTTCACAGTTTATCATAAGTACTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTATGGCTGATTCCTCTTGTTTCACAGTTTATCATAAGTACTTAG  550

seq1  ACTGAACAGAGGCCCTTTTAGATGAGAAAGAGTTTAACTCTTTTTCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACAGAGGCCCTTTTAGATGAGAAAGAGTTTAACTCTTTTTCAGCT  600

seq1  TCTTCCTCAACCTTCACATAAGAACCCACCTGAACAGGCTTAGCTTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCAACCTTCACATAAGAACCCACCTGAACAGGCTTAGCTTGACA  650

seq1  TGAATCCACTCTCTTTCCAATAGCTCCCAGTCTACGTCAATCAGAATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCACTCTCTTTCCAATAGCTCCCAGTCTACGTCAATCAGAATCAC  700

seq1  AAAATACATGAATAAGTTCAGTACTCATTGCTTAAAATATGCCCAAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATGAATAAGTTCAGTACTCATTGCTTAAAATATGCCCAAGCAG  750

seq1  CTTAGTGCTGAACAAAGCCAGGATGTAGCCCATTTTTAAACTCTATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGCTGAACAAAGCCAGGATGTAGCCCATTTTTAAACTCTATGGAA  800

seq1  AATGGGGAGAAAATGAAGTCAATTTACCATAGCTTCTTGATGATATATGT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATGGGGAGAAAATGAAGTCAATTTACCATAGCTTCCTGATGATATATGT  850

seq1  ACATATATATATATACATATACATATACATATACACAGTCAAATACATAT  900
      |||||||||||| |||||||||   |||||||||||||||||||||||||
seq2  ACATATATATATGTACATATACGGCTACATATACACAGTCAAATACATAT  900

seq1  GTGTATATGGTCAAGAAGCTATGGTTCAGAAGCTCTCTCTCTCTCTCTCT  950
      |||||||| ||||||||||||||||||| |||||||||||||||| | ||
seq2  GTGTATATAGTCAAGAAGCTATGGTTCATAAGCTCTCTCTCTCTCACGCT  950

seq1  TTCTCTTTCTCTCTCTCTCTCTCTG  975
      ||| ||||||||||||||| |||||
seq2  TTCGCTTTCTCTCTCTCTCGCTCTG  975

seq1: chr14_7932442_7933355
seq2: B6Ng01-121H19.g_214_1125

seq1  TGACCAGAATATAGAGAGAGTCACACACACACACACACATGCATGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGAATATAGAGAGAGTCACACACACACACACACATGCATGCACAC  50

seq1  AGAATCAGGGTGTGTTTGCAGGGAGAATGAGAAAGTACAATTGAAATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGGGTGTGTTTGCAGGGAGAATGAGAAAGTACAATTGAAATAGA  100

seq1  ATCCAGAGGAAATGCAGAGGACATTCTGTTTATAAGACCCAAAATCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGGAAATGCAGAGGACATTCTGTTTATAAGACCCAAAATCTGAG  150

seq1  AAGAGTATTAATGAGCCCAAGACCTTCCATCATGTATCAGGATGGACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATTAATGAGCCCAAGACCTTCCATCATGTATCAGGATGGACCAA  200

seq1  ATGGGACCAAGCTTTCCTGGTGATATAGCAAGCTTCAGCAAGCAACACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACCAAGCTTTCCTGGTGATATAGCAAGCTTCAGCAAGCAACACCT  250

seq1  GCCAGACAATTACAAAGCTTTGCAAACAAACAAACAACGAACTCAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACAATTACAAAGCTTTGCAAACAAACAAACAACGAACTCAAGCAA  300

seq1  GCAAACAATCAATCAAAACCTCACAGCAACTAATATCTCACTCAAACGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAATCAATCAAAACCTCACAGCAACTAATATCTCACTCAAACGGT  350

seq1  CACATGTCAGTGCCTCTATCAATACATGCTGAGACATCACATCCTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTCAGTGCCTCTATCAATACATGCTGAGACATCACATCCTCTTCA  400

seq1  ATCCCTCAGTTGTAGGCTTTCATTTTCATATAAAAAAAATAGAATACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCAGTTGTAGGCTTTCATTTTCATATAAAAAAAATAGAATACCCT  450

seq1  ATGTCCTCAGCTCACTCCTGCTCTGACTTCAAGTTCAGCCTGTGAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCAGCTCACTCCTGCTCTGACTTCAAGTTCAGCCTGTGAGAATG  500

seq1  TTTAGGGAGAAAAGGTTGGGCACAGTGACACCCTGAAGTTACAGTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAGAAAAGGTTGGGCACAGTGACACCCTGAAGTTACAGTCTCCC  550

seq1  AGTACCATAAAATTTAATAAGAATAAA-TTGTAGGCCATACCATAGACCC  599
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTACCATAAAATTTAATAAGAATAAATTTGTAGGCCATACCATAGACCC  600

seq1  AAGAAATTGACCATGATGTTTGACAG-AATGAAAAATACCTCTTGTGCAA  648
       ||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  CAGAAATTGACCATGATGTTTGACAGAAATGAAAAATAACTCTTGTGCAA  650

seq1  AGCTTTCTCACTGATGAAGATCAGGT-GATCTT-GTAGCTCTTTTTTCCC  696
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  AGCTTTCTCACTGATGAAGATCAGGTGGATCTTGGTAGCTCTTTTTTCCC  700

seq1  ACT-GGTCATCGGCTGACTGATTAGACTTTCCACTTTCCTCACCCATCTT  745
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCATCGGCTGACTGATTAGACTTTCCACTTTCCTCACCCATCTT  750

seq1  CTGAACAGGAGTGTTGGGGATGATGGTGGTACACCAGCAGCCCCTATGGG  795
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTG-ACAGGAGTGTTGGGGATGATGGTGGTACACCAGCAGCCCCCATGGG  799

seq1  TAGATGAACACAAGTGAATATGCATACTGTCAAGGCACAGAGCATTGACA  845
      | || |||| |||  |||| || |||||||| ||||||||||| ||||  
seq2  TTGA-GAAC-CAATGGAATTTG-ATACTGTC-AGGCACAGAGCTTTGAAT  845

seq1  GAACACTGAGTCCTATACAGACA-TCTGACAAAACAGGAATGCATGTGAC  894
       |||||||||| |||||| |||| |||||||||||||||  ||| |||| 
seq2  AAACACTGAGT-CTATAC-GACATTCTGACAAAACAGGATGGCAGGTGA-  892

seq1  CCAGTCATTCCTCTTTCGCT  914
      |||||||||||   ||||||
seq2  CCAGTCATTCCCTCTTCGCT  912