BAC Information

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BAC

Clone NameB6Ng01-122A23
Chromosome14 (Build37)
Map Location 98,371,621 - 98,481,018
singlet/doubletdoublet
Overlap geneDach1
Upstream geneEG668659
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122A23.bB6Ng01-122A23.g
ACCDH925586DH925587
length1,2131,064
definitionDH925586|Mus musculus domesticus DNA, BAC clone: B6Ng01-122A23, 5' end.DH925587|Mus musculus domesticus DNA, BAC clone: B6Ng01-122A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,371,621 - 98,372,849)(98,479,936 - 98,481,018)
sequence
gaattcaacatttttatccacatctactgctgctgcaattgcaaactcta
tgtcttattccataagtccagatatgcgttcttttaaatagtcttcagaa
aagagcacactaattcattatgcaatggcatacttttgaacagaactgta
cagatagagcaggttgtattagggaatatatatacatataatatcagttc
atgaaaataaagaagataagaattttaaaaaaagaacaaggagggtatat
cagatgatttgagaaagaaaaagaaagagaaaataatgtaattataaaat
aattttaaaagtatacaatgagttttagccctattcattcctctcaccca
aattttcagactcgtcccctattccactaccatcccagctttgtgtactg
ttctgtgttttattaaccatggagtccaatttgtattacacatgatagct
gaaggtgcaatgagcacatatatttaaaggtgagcataatatgtacatat
agcattatataccatgcattcttaacaactgtcactctcccaacctgtac
tctttcactcacatagaactcaagatggccatagaaagggaaggcatgat
caaagcatttcatgtctgctgttagaaccaaatattacactttacagtgt
cattgggcttcttagtgcacacttccctgacagtatatgtggaaacattc
ccagtgatggattaacttatgagtcccaaaaacataaccaaatttcagtt
actcaagtggattacatcacattctctcacttaagtttttgaacatgttg
gtctgactttgtggtgaagactcatcccatttggacaagaatttaccttc
caagtatgtgtcagaaacaatcatggagtttccaaactaagcacatagct
acatcacctctctctacaagtctgactcacgaggtctgatgttgaaagtc
tgaggatctgtacttgcatatatagttatatactactacagaaaccatct
gtcatcagcagtcttcatatagaattgaggaagagcacataatcctttga
tgtcttttaaaatatattataaatgagagagcagatgtagcttaaagagg
cgggattatggctacatctaagtcataaagtcagagacaatgatgatctc
agtacttaggcaaatgtagccatgcctgtaaccttattatcttgggagct
caagtcattctat
gaattctgtacctaggtacatagagaagtcactgaggtcttgctatatag
ctgagtggtaaaatacatgcttttgaagctcaagtttcctgggtcccatc
tccagcatcatttctcataacattgcttcatcctcgagcacctctttcct
ttactgcagccttgacaggaagaaaactgcaccatgttaggacagactat
ataggccagtgtatatatagacacacacacacgcacacacgagaacactt
tttaaaagaaatggtagagccttcagctggcaaatggtggacatttcatt
agtttactgttagaatggacttcaaagagcactgtggtttgttaagctgt
tcaccaacctgaagatgggaagttcattgtgacaagggagtaagaaagga
aaggctcagagcaagacgttcttctactgaaaacataaagtggccaggat
ttcaggcccagcaatgcaaatgcatttcgctaggttcaggttacagtctt
ttaaactttttattgcttaatatgacacagtgacatttaaaatatggaga
aatggaagataaataatacggactgaatgacattgatttaaaattttaaa
gctgtgttaaaagtattctaacacactgaaggacatttgtaagttgtaca
ttgtttatagatttctgattagaactccaaagcataatgtattatagctt
gccatttcctgtagaggaaaaagaatattgtctgcagaaaagaatggata
gtaaaaatttaggctcctaattttctttcttttaagtcattcgctttttt
gttaaaggcctttatgcataggcctcttacaagttccaatcagtatctta
tatatttgttctggaatactttccaaagagtcatttcttcgtaaaatgta
aaattgtaatagcctgtagactgtcatttatgctaaaatacaaagaataa
gtttcacaagagcattcaaacagttatttgataatccaacgtatctttta
ttgcatttatacaaacaaacctgtatgcatatcttctgttttttcagaaa
aaaaatatgactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_98371621_98372849
seq2: B6Ng01-122A23.b_51_1263

seq1  GAATTCAACATTTTTATCCACATCTACTGCTGCTGCAATTGCAAACTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATTTTTATCCACATCTACTGCTGCTGCAATTGCAAACTCTA  50

seq1  TGTCTTATTCCATAAGTCCAGATATGCGTTCTTTTAAATAGTCTTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATTCCATAAGTCCAGATATGCGTTCTTTTAAATAGTCTTCAGAA  100

seq1  AAGAGCACACTAATTCATTATGCAATGGCATACTTTTGAACAGAACTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACACTAATTCATTATGCAATGGCATACTTTTGAACAGAACTGTA  150

seq1  CAGATAGAGCAGGTTGTATTAGGGAATATATATACATATAATATCAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGAGCAGGTTGTATTAGGGAATATATATACATATAATATCAGTTC  200

seq1  ATGAAAATAAAGAAGATAAGAATTTTAAAAAAAGAACAAGGAGGGTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATAAAGAAGATAAGAATTTTAAAAAAAGAACAAGGAGGGTATAT  250

seq1  CAGATGATTTGAGAAAGAAAAAGAAAGAGAAAATAATGTAATTATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATTTGAGAAAGAAAAAGAAAGAGAAAATAATGTAATTATAAAAT  300

seq1  AATTTTAAAAGTATACAATGAGTTTTAGCCCTATTCATTCCTCTCACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAAGTATACAATGAGTTTTAGCCCTATTCATTCCTCTCACCCA  350

seq1  AATTTTCAGACTCGTCCCCTATTCCACTACCATCCCAGCTTTGTGTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAGACTCGTCCCCTATTCCACTACCATCCCAGCTTTGTGTACTG  400

seq1  TTCTGTGTTTTATTAACCATGGAGTCCAATTTGTATTACACATGATAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTTTTATTAACCATGGAGTCCAATTTGTATTACACATGATAGCT  450

seq1  GAAGGTGCAATGAGCACATATATTTAAAGGTGAGCATAATATGTACATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGCAATGAGCACATATATTTAAAGGTGAGCATAATATGTACATAT  500

seq1  AGCATTATATACCATGCATTCTTAACAACTGTCACTCTCCCAACCTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATATACCATGCATTCTTAACAACTGTCACTCTCCCAACCTGTAC  550

seq1  TCTTTCACTCACATAGAACTCAAGATGGCCATAGAAAGGGAAGGCATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACTCACATAGAACTCAAGATGGCCATAGAAAGGGAAGGCATGAT  600

seq1  CAAAGCATTTCATGTCTGCTGTTAGAACCAAATATTACACTTTACAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATTTCATGTCTGCTGTTAGAACCAAATATTACACTTTACAGTGT  650

seq1  CATTGGGCTTCTTAGTGCACACTTCCCTGACAGTATATGTGGAAACATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGCTTCTTAGTGCACACTTCCCTGACAGTATATGTGGAAACATTC  700

seq1  CCAGTGATGGATTAACTTATGAGTCCCAAAAACATAACCAAATTTCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATGGATTAACTTATGAGTCCCAAAAACATAACCAAATTTCAGTT  750

seq1  ACTCAAGTGGATTACATCACATTCTCTCACTTAAGTTTTTGAACATGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTGGATTACATCACATTCTCTCACTTAAGTTTTTGAACATGTTG  800

seq1  GTCTGACTTTGTGGTGAAGACTCATCCCATTTGGACAAGAATTTACCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACTTTGTGGTGAAGACTCATCCCATTTGGACAAGAATTTACCTTC  850

seq1  CAAGTATGTGTCAGAAACAATCATGGAGTTTCCAAACTAAGCACATAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGTGTCAGAAACAATCATGGAGTTTCCAAACTAAGCACATAGCT  900

seq1  ACATCACCTCTCTCTACAAGTCTGACTCAGGAGGTCTGATGTTGAAAGTC  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACATCACCTCTCTCTACAAGTCTGACTCACGAGGTCTGATGTTGAAAGTC  950

seq1  TGAGGATCTGTACTTGCATATTATAGTTATAATACTACTACAGAAACCAT  1000
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  TGAGGATCTGTACTTGCATA-TATAGTTAT-ATACTACTACAGAAACCAT  998

seq1  CTTGTCATCCAGCAGTCTTCATATAGAATTGAGGAAGAGCAACATAATCC  1050
      | |||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  C-TGTCAT-CAGCAGTCTTCATATAGAATTGAGGAAGAGC-ACATAATCC  1045

seq1  TTTGATGTCTTTTTAAAATATA-TATAAATGAGAGAAGCAGATGTAGCTT  1099
      ||||||||| |||||||||||| |||||||||||| ||||||||||||||
seq2  TTTGATGTC-TTTTAAAATATATTATAAATGAGAG-AGCAGATGTAGCTT  1093

seq1  AAAGGAGGCGGGGATTATGGCTACATCCTTAGGTCATAAAGTCAAGAGAC  1149
      ||| ||||| |||||||||||||||||  || ||||||||||| ||||||
seq2  AAA-GAGGC-GGGATTATGGCTACATC--TAAGTCATAAAGTC-AGAGAC  1138

seq1  TATGGATAGATTCTCAGTATACTTAGCACAAATGTTAGCACAGTGCTGTA  1199
       || ||| || ||||||  |||||||  |||||| |||| ||   |||||
seq2  AAT-GAT-GA-TCTCAG--TACTTAG-GCAAATG-TAGC-CATGCCTGTA  1180

seq1  ACC-TATTA--CTGAAAGCTCAAGTCATTCTAT  1229
      ||| |||||   ||  |||||||||||||||||
seq2  ACCTTATTATCTTGGGAGCTCAAGTCATTCTAT  1213

seq1: chr14_98479936_98481018
seq2: B6Ng01-122A23.g_62_1125 (reverse)

seq1  AGAGTCATTATTTTTTTTCTG-AAAAACAGGAGATATTGGCATACAGTTT  49
      ||||||| ||||||||||||| |||||||| ||||||  |||||||| ||
seq2  AGAGTCA-TATTTTTTTTCTGAAAAAACAGAAGATAT--GCATACAGGTT  47

seq1  TTGGTTTTGTTAATAAATGCAATAAAAGATACGTTTGAATTATCAAAATA  99
      |    |||||  ||||||||||||||||||||| ||| |||||| |||||
seq2  T---GTTTGT--ATAAATGCAATAAAAGATACG-TTGGATTATC-AAATA  90

seq1  ACTTGGTTTGAATGCTCTTGTGAAAACTTATTCTTTGTATTTTAGGCATA  149
      |||  ||||||||||||||||| ||||||||||||||||||||| |||||
seq2  ACT--GTTTGAATGCTCTTGTG-AAACTTATTCTTTGTATTTTA-GCATA  136

seq1  AAATGGACAGTTCTTACAGGCTATTACAATTTTAACATTTTTACGGAAGA  199
      ||   ||||||   ||||||||||||||||||| ||| |||||| |||||
seq2  AA--TGACAGT--CTACAGGCTATTACAATTTT-ACA-TTTTAC-GAAGA  179

seq1  AATGACTCTTTGG-AAGTATTCCAGAACAAATATATAAGATACTGATTGG  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATGACTCTTTGGAAAGTATTCCAGAACAAATATATAAGATACTGATTGG  229

seq1  AACTTGTAAGAGGCCTATGCATAAAGGCCTTTAACAAAAAAGCGAATGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTAAGAGGCCTATGCATAAAGGCCTTTAACAAAAAAGCGAATGAC  279

seq1  TTAAAAGAAAGAAAATTAGGAGCCTAAATTTTTACTATCCATTCTTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAAAGAAAATTAGGAGCCTAAATTTTTACTATCCATTCTTTTCT  329

seq1  GCAGACAATATTCTTTTTCCTCTACAGGAAATGGCAAGCTATAATACATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAATATTCTTTTTCCTCTACAGGAAATGGCAAGCTATAATACATT  379

seq1  ATGCTTTGGAGTTCTAATCAGAAATCTATAAACAATGTACAACTTACAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGGAGTTCTAATCAGAAATCTATAAACAATGTACAACTTACAAA  429

seq1  TGTCCTTCAGTGTGTTAGAATACTTTTAACACAGCTTTAAAATTTTAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCAGTGTGTTAGAATACTTTTAACACAGCTTTAAAATTTTAAAT  479

seq1  CAATGTCATTCAGTCCGTATTATTTATCTTCCATTTCTCCATATTTTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCATTCAGTCCGTATTATTTATCTTCCATTTCTCCATATTTTAAA  529

seq1  TGTCACTGTGTCATATTAAGCAATAAAAAGTTTAAAAGACTGTAACCTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTGTCATATTAAGCAATAAAAAGTTTAAAAGACTGTAACCTGA  579

seq1  ACCTAGCGAAATGCATTTGCATTGCTGGGCCTGAAATCCTGGCCACTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCGAAATGCATTTGCATTGCTGGGCCTGAAATCCTGGCCACTTTA  629

seq1  TGTTTTCAGTAGAAGAACGTCTTGCTCTGAGCCTTTCCTTTCTTACTCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGTAGAAGAACGTCTTGCTCTGAGCCTTTCCTTTCTTACTCCC  679

seq1  TTGTCACAATGAACTTCCCATCTTCAGGTTGGTGAACAGCTTAACAAACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAATGAACTTCCCATCTTCAGGTTGGTGAACAGCTTAACAAACC  729

seq1  ACAGTGCTCTTTGAAGTCCATTCTAACAGTAAACTAATGAAATGTCCACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTCTTTGAAGTCCATTCTAACAGTAAACTAATGAAATGTCCACC  779

seq1  ATTTGCCAGCTGAAGGCTCTACCATTTCTTTTAAAAAGTGTTCTCGTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCAGCTGAAGGCTCTACCATTTCTTTTAAAAAGTGTTCTCGTGTG  829

seq1  TGCGTGTGTGTGTGTCTATATATACACTGGCCTATATAGTCTGTCCTAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTGTGTGTGTCTATATATACACTGGCCTATATAGTCTGTCCTAAC  879

seq1  ATGGTGCAGTTTTCTTCCTGTCAAGGCTGCAGTAAAGGAAAGAGGTGCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCAGTTTTCTTCCTGTCAAGGCTGCAGTAAAGGAAAGAGGTGCTC  929

seq1  GAGGATGAAGCAATGTTATGAGAAATGATGCTGGAGATGGGACCCAGGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGAAGCAATGTTATGAGAAATGATGCTGGAGATGGGACCCAGGAA  979

seq1  ACTTGAGCTTCAAAAGCATGTATTTTACCACTCAGCTATATAGCAAGACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGCTTCAAAAGCATGTATTTTACCACTCAGCTATATAGCAAGACC  1029

seq1  TCAGTGACTTCTCTATGTACCTAGGTACAGAATTC  1083
      |||||||||||||||||||||||||||||||||||
seq2  TCAGTGACTTCTCTATGTACCTAGGTACAGAATTC  1064