BAC Information

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BAC

Clone NameB6Ng01-122C24
Chromosome14 (Build37)
Map Location 17,082,432 - 17,230,615
singlet/doubletdoublet
Overlap geneNgly1, Top2b
Upstream geneLrrc3b, LOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm
Downstream geneRarb, Tpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122C24.bB6Ng01-122C24.g
ACCDH925680DH925681
length1,2091,064
definitionDH925680|Mus musculus domesticus DNA, BAC clone: B6Ng01-122C24, 5' end.DH925681|Mus musculus domesticus DNA, BAC clone: B6Ng01-122C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,229,378 - 17,230,615)(17,082,432 - 17,083,525)
sequence
gaattcaaacttaggtcttcaatgcttatactgccagcactcctacccat
agaagcatcctcctaaccctacatgattcaatttcaattatactcttaac
aggaaatcatagcataaatgaaattttccataactaaataaagggtaaac
ttaaaattttaaacttgatttgattcttaccagcatcattggcatcatcc
agtttgggaatgcctttgattttactgtactttactgatgaacacttctt
attcagttgagtctgagccttaaatttcacccagttcaatatgctttcta
caatgccacaattagaggccttaaaaaaagaaatcaaaggtcagcagtat
ataaaatagctcataagttaacctaaaatgtatacaattgtctatgacaa
tgagaattcaggcactttgaaagacaaaattataatgattataagacatt
ctagtaaattttactgaatgacaataaaactacagttatagctagttagt
caaactaactcagacaactatacatacaatgacctaaagtactaagacaa
atatgagaaaaatcttgtaaacttcatgaatatgaaggctcttgtaggac
tcttattgcaagttaacaatagtaaaagcttaaagacgcattaatttatt
aattggaaaatccagacattgacatcttcaatatccttcaatttaaaatg
tgaagcctaaaatcttatgagaaaaaatactgattatgaagatcacatta
ggataactgagaaattcatacaaaaccctcattttgctaacagagacttt
acttaacacattgtttatgattcagaatgaattggtgtgtgaaagatctt
caattccaattcttaaaccttttttaaatcatccttagtgatgtgggttt
ttttttttttttttaggcacaatagttttctaggcaattaatgagaaaaa
aaggtaatctgtgccaatctagacttgattcacctaaataaaaacaatac
agtatctataaccaaatcactcttgtaagagcattgtacatgacagctat
aatataatgtggagcctcagaattcattataaatatttctacagtgaaag
cagtacctaaaaagccattgctatgctcttaaactccctacgtgaaactt
aattgggattaaaatcattcatgaccacataatctctttccccaccacac
tatggaact
gaattcttagtttaaaggctgtacagttcatgcggaccagctttagagag
ttagttgttagagacattgaggtgttgtcctgtaccccaaactggcatgg
aacttgatctgtaccccagaactcatgccagtcacgacctaccaaaagct
gagattacaggtgtgtgccaccacaaccataattcttcatttaggtgaca
ttagtgatatttaaaatatatttgaaaagggaatataatgtgattctatg
ccagatgttatgcagcatttgggcttgcacataattgtgacttgtgtgaa
gatggccttcctcctttatgacacctcagcttaaccctgagatctcacag
cacctcagagtacaaggtgtctgaaagaactcataagcttgattctccag
agcccacagctggcgtttcatactgaattgtttaagtcttcaacctccca
cccccatacataagagaaggatggatttgtaaagacatttcgattctgtt
agtacaatgaaaccaaagatgctaagatcagagtactttgaaagatagct
ttgcatgcagacagttatttcggatcatgaccatcattatgaatatttac
taaatttcttaaagaaactggttcattttacagcctttactgtggcttac
atttctgatcttggagtttttgttttataaaggaaattagagcagtttgt
aagagaaatgattcaggttgatgtgagaaaatgctcctttagtttgtttt
caacaagtgtccttgtgttcttagaattcaaggtctggcttggttgggag
atgatatcctgcttctcatgtccaaatccagtgacttcttaactcttaag
aaaagctcatgtcttcctggtccctgaccgcacatatatatactctgtat
ttggtagagaaatcagtcctcttgcatgctattttctttaaacccactag
tgccatagtgagcactatgaggcatattgtccagcatctcatttgctcag
tatcagaacatatagattgatatgcattaaatgcatagctgtttgaagta
gaaacttgtcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17229378_17230615
seq2: B6Ng01-122C24.b_30_1238 (reverse)

seq1  AGTT-CATAGTGTGGTGGGAATAGAGTATA-GTTGTCATGGAGAATGTAT  48
      |||| |||||||||||||| | ||||  || || |||||   ||||| ||
seq2  AGTTCCATAGTGTGGTGGGGAAAGAGATTATGTGGTCAT---GAATG-AT  46

seq1  TTTTTTAAATCCCAATATTAGGTTTTCAAAGGTAGGGAGTATAAGAAGCA  98
      |||    |||||||  |||| ||||    | ||||||||| |||| ||||
seq2  TTT----AATCCCA--ATTAAGTTT---CACGTAGGGAGTTTAAG-AGCA  86

seq1  TAAGCAAATGTGCTTTTTTAGGTACTTGCTTTTCAAACTGTAG-AATATT  147
      | |||||   ||  ||||||||||| ||||||    ||||||| ||||||
seq2  T-AGCAA---TGGCTTTTTAGGTAC-TGCTTT---CACTGTAGAAATATT  128

seq1  TATAATGAATTCTGA-GCT-CACATTATATTATAGCTGTCATTGTAACAA  195
      ||||||||||||||| ||| ||||||||||||||||||||| ||| ||||
seq2  TATAATGAATTCTGAGGCTCCACATTATATTATAGCTGTCA-TGT-ACAA  176

seq1  TTGCTCTTAC-AGAGTGATTTGGTTATAGATACTGTATTG-TTTTATTTA  243
       ||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  -TGCTCTTACAAGAGTGATTTGGTTATAGATACTGTATTGTTTTTATTTA  225

seq1  GGTGAATCAAGTCTAGATTTGGCACAGATTACCTTTTTTTCTCATTAAAT  293
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  GGTGAATCAAGTCTAGA-TTGGCACAGATTACCTTTTTTTCTCATT-AAT  273

seq1  TGCCTAGAAAACTATTGTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACC  343
      ||||||||||||||||||||||         |||||||||||||||||||
seq2  TGCCTAGAAAACTATTGTGCCT---------AAAAAAAAAAAAAAAAACC  314

seq1  CACATCACTAAGGATGATTTAAAAAAGGTTTAAGAATTGGAATTGAAGAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACTAAGGATGATTTAAAAAAGGTTTAAGAATTGGAATTGAAGAT  364

seq1  CTTTCACACACCAATTCATTCTGAATCATAAACAATGTGTTAAGTAAAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACACACCAATTCATTCTGAATCATAAACAATGTGTTAAGTAAAGT  414

seq1  CTCTGTTAGCAAAATGAGGGTTTTGTATGAATTTCTCAGTTATCCTAATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTAGCAAAATGAGGGTTTTGTATGAATTTCTCAGTTATCCTAATG  464

seq1  TGATCTTCATAATCAGTATTTTTTCTCATAAGATTTTAGGCTTCACATTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCATAATCAGTATTTTTTCTCATAAGATTTTAGGCTTCACATTT  514

seq1  TAAATTGAAGGATATTGAAGATGTCAATGTCTGGATTTTCCAATTAATAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAAGGATATTGAAGATGTCAATGTCTGGATTTTCCAATTAATAA  564

seq1  ATTAATGCGTCTTTAAGCTTTTACTATTGTTAACTTGCAATAAGAGTCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGCGTCTTTAAGCTTTTACTATTGTTAACTTGCAATAAGAGTCCT  614

seq1  ACAAGAGCCTTCATATTCATGAAGTTTACAAGATTTTTCTCATATTTGTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCCTTCATATTCATGAAGTTTACAAGATTTTTCTCATATTTGTC  664

seq1  TTAGTACTTTAGGTCATTGTATGTATAGTTGTCTGAGTTAGTTTGACTAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACTTTAGGTCATTGTATGTATAGTTGTCTGAGTTAGTTTGACTAA  714

seq1  CTAGCTATAACTGTAGTTTTATTGTCATTCAGTAAAATTTACTAGAATGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATAACTGTAGTTTTATTGTCATTCAGTAAAATTTACTAGAATGT  764

seq1  CTTATAATCATTATAATTTTGTCTTTCAAAGTGCCTGAATTCTCATTGTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATCATTATAATTTTGTCTTTCAAAGTGCCTGAATTCTCATTGTC  814

seq1  ATAGACAATTGTATACATTTTAGGTTAACTTATGAGCTATTTTATATACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAATTGTATACATTTTAGGTTAACTTATGAGCTATTTTATATACT  864

seq1  GCTGACCTTTGATTTCTTTTTTTAAGGCCTCTAATTGTGGCATTGTAGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTTTGATTTCTTTTTTTAAGGCCTCTAATTGTGGCATTGTAGAA  914

seq1  AGCATATTGAACTGGGTGAAATTTAAGGCTCAGACTCAACTGAATAAGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTGAACTGGGTGAAATTTAAGGCTCAGACTCAACTGAATAAGAA  964

seq1  GTGTTCATCAGTAAAGTACAGTAAAATCAAAGGCATTCCCAAACTGGATG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATCAGTAAAGTACAGTAAAATCAAAGGCATTCCCAAACTGGATG  1014

seq1  ATGCCAATGATGCTGGTAAGAATCAAATCAAGTTTAAAATTTTAAGTTTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATGATGCTGGTAAGAATCAAATCAAGTTTAAAATTTTAAGTTTA  1064

seq1  CCCTTTATTTAGTTATGGAAAATTTCATTTATGCTATGATTTCCTGTTAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATTTAGTTATGGAAAATTTCATTTATGCTATGATTTCCTGTTAA  1114

seq1  GAGTATAATTGAAATTGAATCATGTAGGGTTAGGAGGATGCTTCTATGGG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAATTGAAATTGAATCATGTAGGGTTAGGAGGATGCTTCTATGGG  1164

seq1  TAGGAGTGCTGGCAGTATAAGCATTGAAGACCTAAGTTTGAATTC  1238
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGCTGGCAGTATAAGCATTGAAGACCTAAGTTTGAATTC  1209

seq1: chr14_17082432_17083525
seq2: B6Ng01-122C24.g_61_1124

seq1  GAATTCTTAGTTTAAAGGCTGTACAGTTCATGCGGACCAGCTTTAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTTAAAGGCTGTACAGTTCATGCGGACCAGCTTTAGAGAG  50

seq1  TTAGTTGTTAGAGACATTGAGGTGTTGTCCTGTACCCCAAACTGGCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTTAGAGACATTGAGGTGTTGTCCTGTACCCCAAACTGGCATGG  100

seq1  AACTTGATCTGTACCCCAGAACTCATGCCAGTCACGACCTACCAAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATCTGTACCCCAGAACTCATGCCAGTCACGACCTACCAAAAGCT  150

seq1  GAGATTACAGGTGTGTGCCACCACAACCATAATTCTTCATTTAGGTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACAGGTGTGTGCCACCACAACCATAATTCTTCATTTAGGTGACA  200

seq1  TTAGTGATATTTAAAATATATTTGAAAAGGGAATATAATGTGATTCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATATTTAAAATATATTTGAAAAGGGAATATAATGTGATTCTATG  250

seq1  CCAGATGTTATGCAGCATTTGGGCTTGCACATAATTGTGACTTGTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTTATGCAGCATTTGGGCTTGCACATAATTGTGACTTGTGTGAA  300

seq1  GATGGCCTTCCTCCTTTATGACACCTCAGCTTAACCCTGAGATCTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTTCCTCCTTTATGACACCTCAGCTTAACCCTGAGATCTCACAG  350

seq1  CACCTCAGAGTACAAGGTGTCTGAAAGAACTCATAAGCTTGATTCTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGAGTACAAGGTGTCTGAAAGAACTCATAAGCTTGATTCTCCAG  400

seq1  AGCCCACAGCTGGCGTTTCATACTGAATTGTTTAAGTCTTCAACCTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACAGCTGGCGTTTCATACTGAATTGTTTAAGTCTTCAACCTCCCA  450

seq1  CCCCCATACATAAGAGAAGGATGGATTTGTAAAGACATTTCGATTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATACATAAGAGAAGGATGGATTTGTAAAGACATTTCGATTCTGTT  500

seq1  AGTACAATGAAACCAAAGATGCTAAGATCAGAGTACTTTGAAAGATAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATGAAACCAAAGATGCTAAGATCAGAGTACTTTGAAAGATAGCT  550

seq1  TTGCATGCAGACAGTTATTTCGGATCATGACCATCATTATGAATATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCAGACAGTTATTTCGGATCATGACCATCATTATGAATATTTAC  600

seq1  TAAATTTCTTAAAGAAACTGGTTCATTTTACAGCCTTTACTGTGGCTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCTTAAAGAAACTGGTTCATTTTACAGCCTTTACTGTGGCTTAC  650

seq1  ATTTCTGATCTTGGAGTTTTTGTTTTATAAAGGAAATTAGAGCAGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGATCTTGGAGTTTTTGTTTTATAAAGGAAATTAGAGCAGTTTGT  700

seq1  AAGAGAAATGATTCAGGTTGATGTGAGAAAATGCTCCTTTAGTTTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATGATTCAGGTTGATGTGAGAAAATGCTCCTTTAGTTTGTTTT  750

seq1  CAACAAGTGTCCTTGTGTTCTTAGAATTCAAGGTCTGGCTTGGTTGGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTGTCCTTGTGTTCTTAGAATTCAAGGTCTGGCTTGGTTGGGAG  800

seq1  ATGATATCCTGCTTCTTCATGTCCAAATCCAGTGACTTCTTAACTCTTAA  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGATATCCTGCTTC-TCATGTCCAAATCCAGTGACTTCTTAACTCTTAA  849

seq1  GGAAAAGCTCCATGTCTTCCTGGTCCCTGACCGCACATTATAATTATACT  900
       |||||||| ||||||||||||||||||||||||||| ||||  ||||| 
seq2  -GAAAAGCT-CATGTCTTCCTGGTCCCTGACCGCACA-TATA--TATAC-  893

seq1  TCTGTAATTTGGTAGAGAAAATCAGGTTCCTCTTTGCATTGCTATTTTCT  950
      ||||| ||||||||||| |||||||  ||||| ||||| |||||||||| 
seq2  TCTGT-ATTTGGTAGAG-AAATCAG--TCCTC-TTGCA-TGCTATTTTC-  936

seq1  TTTAAACCCACTAGTGCCATAGTGGAGGCACTATTGAAGGCATATTGTCC  1000
      ||||||||||||||||||||||||   |||||||   ||||||||||| |
seq2  TTTAAACCCACTAGTGCCATAGTG--AGCACTAT--GAGGCATATTGT-C  981

seq1  CAGCATCTCATTTGCCTCAGTATCAGAACAATTTATAGAATGGATATGCA  1050
      |||||||||||||| |||||||||||||||   ||||| || ||||||||
seq2  CAGCATCTCATTTG-CTCAGTATCAGAACA---TATAG-ATTGATATGCA  1026

seq1  AATAAAAATGCATTAGCTTGTTTTGAAGTAGATACTTGTCACTG  1094
           ||||||| |||||   ||||||||||| |||||||||||
seq2  ---TTAAATGCA-TAGCT--GTTTGAAGTAGAAACTTGTCACTG  1064