BAC Information

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BAC

Clone NameB6Ng01-123B10
Chromosome14 (Build37)9 (Build37)
Map Location 80,018,445 - 80,019,47741,434,784 - 41,434,846
singlet/doubletsingletsinglet
Overlap geneSugt1
Upstream geneDgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560
Downstream geneLect1, Pcdh8, EG629734, Olfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123B10.bB6Ng01-123B10.g
ACCDH926351DH926352
length1,03356
definitionDH926351|Mus musculus domesticus DNA, BAC clone: B6Ng01-123B10, 5' end.DH926352|Mus musculus domesticus DNA, BAC clone: B6Ng01-123B10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,018,445 - 80,019,477)(41,434,784 - 41,434,846)
sequence
gaattctcttacacacagagtcctcagaggtgggctggtggtattataat
actgagaactggtgagccagcacaaaactggttcttacagatggcttata
gctacttctctgatatatgatcatctcttaaaagcattttctgtgtactt
gagagtaatatttaaattaccaaagttttaagataattgtgtgttggggg
atgcatgcatacgcatgtgagtgaacgtgtgtgaaggcaggtcaacatct
ggtgtcttccccatttccctttttgagacctggtctctccctgaacctgg
agctcagtgattggccggcaaacctgagggatccccttgctcgcacccca
acccaccccatctctatcttcttcgctttggggttgcaagcttccgtgcc
cagctttgtacatgggtactgagggtctgaacccggtccttaggcctgcg
gggcaagctctttaccaactgagccatcttctcaaacacttaaggaagtt
tcacttaaacacaaataagtttgcttattgatggttacaatgaaaacatt
tctgaaactgggcagataattctagaagtatctaccagagtcctcaagac
ttaaatttaaatttaaattttaagagcatgtatgaattgaaaattaagaa
taaaaaggaattcatacttctccccatcttttgaacttctacgaggttgc
cttttcatggtttatggtgtgcatgctactgtcttagtgagtggattaag
tagaacttcaagttggatcagcttgtgctaagagataaaggcctctttgt
tcaaagtgcacaaatgcccaggttacagtggctttcaataaatgtaagtg
ctagtatatggtgctcttcaggtgaaacaaggatctttttaataagagta
aaatttttataattcttcagatctaactttgtataatgtaggcaaactat
caaagacacttaattctaaaaactttgattagttatggaaaattgcattt
ttgctgtttatgtatcttaggtggagtaatggg
ttaagacattggtggaggaggcaggaaggaggtagaggagaaagaaggga
ggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80018445_80019477
seq2: B6Ng01-123B10.b_47_1079

seq1  GAATTCTCTTACACACAGAGTCCTCAGAGGTGGGCTGGTGGTATTATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACACACAGAGTCCTCAGAGGTGGGCTGGTGGTATTATAAT  50

seq1  ACTGAGAACTGGTGAGCCAGCACAAAACTGGTTCTTACAGATGGCTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAACTGGTGAGCCAGCACAAAACTGGTTCTTACAGATGGCTTATA  100

seq1  GCTACTTCTCTGATATATGATCATCTCTTAAAAGCATTTTCTGTGTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTCTCTGATATATGATCATCTCTTAAAAGCATTTTCTGTGTACTT  150

seq1  GAGAGTAATATTTAAATTACCAAAGTTTTAAGATAATTGTGTGTTGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAATATTTAAATTACCAAAGTTTTAAGATAATTGTGTGTTGGGGG  200

seq1  ATGCATGCATACGCATGTGAGTGAACGTGTGTGAAGGCAGGTCAACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCATACGCATGTGAGTGAACGTGTGTGAAGGCAGGTCAACATCT  250

seq1  GGTGTCTTCCCCATTTCCCTTTTTGAGACCTGGTCTCTCCCTGAACCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTCCCCATTTCCCTTTTTGAGACCTGGTCTCTCCCTGAACCTGG  300

seq1  AGCTCAGTGATTGGCCGGCAAACCTGAGGGATCCCCTTGCTCGCACCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTGATTGGCCGGCAAACCTGAGGGATCCCCTTGCTCGCACCCCA  350

seq1  ACCCACCCCATCTCTATCTTCTTCGCTTTGGGGTTGCAAGCTTCCGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCCATCTCTATCTTCTTCGCTTTGGGGTTGCAAGCTTCCGTGCC  400

seq1  CAGCTTTGTACATGGGTACTGAGGGTCTGAACCCGGTCCTTAGGCCTGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGTACATGGGTACTGAGGGTCTGAACCCGGTCCTTAGGCCTGCG  450

seq1  GGGCAAGCTCTTTACCAACTGAGCCATCTTCTCAAACACTTAAGGAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGCTCTTTACCAACTGAGCCATCTTCTCAAACACTTAAGGAAGTT  500

seq1  TCACTTAAACACAAATAAGTTTGCTTATTGATGGTTACAATGAAAACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAACACAAATAAGTTTGCTTATTGATGGTTACAATGAAAACATT  550

seq1  TCTGAAACTGGGCAGATAATTCTAGAAGTATCTACCAGAGTCCTCAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACTGGGCAGATAATTCTAGAAGTATCTACCAGAGTCCTCAAGAC  600

seq1  TTAAATTTAAATTTAAATTTTAAGAGCATGTATGAATTGAAAATTAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTAAATTTAAATTTTAAGAGCATGTATGAATTGAAAATTAAGAA  650

seq1  TAAAAAGGAATTCATACTTCTCCCCATCTTTTGAACTTCTACGAGGTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGAATTCATACTTCTCCCCATCTTTTGAACTTCTACGAGGTTGC  700

seq1  C-TTTCATGGTTTATGGTGTGCATGCTACTGTCTTAGTGAGTGGATTAAG  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGGTTTATGGTGTGCATGCTACTGTCTTAGTGAGTGGATTAAG  750

seq1  TAGAACTTCAAGTTGGATCAGCTTGTGCTAAGAGATAAAGGCCTCTTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTCAAGTTGGATCAGCTTGTGCTAAGAGATAAAGGCCTCTTTGT  800

seq1  TCAAAGTGCACAAATGCCCAGGTTACAGTGGCTTTCAATAAATGTAAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGCACAAATGCCCAGGTTACAGTGGCTTTCAATAAATGTAAGTG  850

seq1  CTAGTATATGGTGCTCTTCAGGTGAAACAAGGATCTTTTTAATAAGAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATATGGTGCTCTTCAGGTGAAACAAGGATCTTTTTAATAAGAGTA  900

seq1  AAATTTTTATAATTCTTCAGATCTAACTTTGTATAATGTAGGCAAACTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTATAATTCTTCAGATCTAACTTTGTATAATGTAGGCAAACTAT  950

seq1  CAAAGACACTTAATTCTTAAAAACTTTGATTAGTTAT-GAAAATTGCATT  998
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  CAAAGACACTTAATTC-TAAAAACTTTGATTAGTTATGGAAAATTGCATT  999

seq1  TTTGCTGTTTTATGTATCTTAGGTTGAGTAATGGG  1033
      ||||||| |||||||||||||||| ||||||||||
seq2  TTTGCTG-TTTATGTATCTTAGGTGGAGTAATGGG  1033

seq1: chr9_41434784_41434846
seq2: B6Ng01-123B10.g_78_128 (reverse)

seq1  TCCTCCTCCTTATCTCTGTCTTTCTCCTCTACCTCCTTCAGTCCTAACTT  50
      ||||||||| |       |||||||||||||||||||||   ||     |
seq2  TCCTCCTCCCT-------TCTTTCTCCTCTACCTCCTTCCTGCC-----T  38

seq1  CCTCCACCTATGT  63
      |||||||| ||||
seq2  CCTCCACCAATGT  51