BAC Information

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BAC

Clone NameB6Ng01-123O06
Chromosome14 (Build37)
Map Location 57,450,911 - 57,598,860
singlet/doubletdoublet
Overlap geneLOC219106, LOC668118, Zmym2
Upstream geneNfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797
Downstream geneLOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123O06.bB6Ng01-123O06.g
ACCDH926938DH926939
length424924
definitionDH926938|Mus musculus domesticus DNA, BAC clone: B6Ng01-123O06, 5' end.DH926939|Mus musculus domesticus DNA, BAC clone: B6Ng01-123O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,450,911 - 57,451,340)(57,597,932 - 57,598,860)
sequence
tttttatttatttatttattttttaaaaatttttggtttttcaagacagg
gttcctctgtatagccctggctgtcctggaactcactttgtagaccaggc
tggcctcgaactcagaaatctgcttgcctctgcctcccgagtgctgggat
taaaggagtgcactaccatgcccagcttagtttggagaattctgctctgg
gcctatgtgaccacaagtcacatttccttatgtgaggaatgtggcatgtg
ttccaggccaggaatctggcagacagcagggagtggcctaagtcttaagt
gtgtgcttactgagtctccagatctcaacctgctctaccttaccaagctt
cctggcatggttttactgtccaacatgaccctgggtctgaaatttaagaa
gtgtgtggatgggtgggtggggtg
gaattccaagtgtccctgcacctcaagtaaaacactgcatcaggacttgc
tgtggtagaagtacaaacacgtagacttgaaggagccatgaaggagatgt
ttatcttagtcctcctggggcatcactgctttcagtttgcgttatcttct
acccatactttcacatagaatctgactcattcctatttctacatatatat
atacatatacatatacatatacatatacatatacatatacatatatacat
atacatatacatatatatatatattatgaacagtctctatgttagtacat
ttcctttttcaaatgtgtaatctctaaaggcagctaaggtcacatcactt
aggtcacgtatacacttatacccgacatcctggtgcttgacaggctgaga
cagcatcaccaagatctggccagcctgggctacagagtacttcgaagata
gctcaggctactactgtgtgaggccctgtctcaaaacccagccacaagaa
aataaataaatagattccaccatttcactgtatgacaatttgtttaatca
aaagccaattctgcacgcacatctttttttctttttctcttcatttttca
tgctgtgagtatgtgcacgcacatggggtttttttgtttggttggttttt
tgggtttttttgtatgtgtgagcagagtgcattcctgtgaccagggccaa
agcttaaagactgatgtgaaaaatcagcctcaacctctcttcctcttatt
cagtgagtcctggcctcttgatcaaatcaggagctcacagccatggtcaa
accttgctggctgcttactcctggggatctctacttcagagtaatcaatc
cactattgcctgccccagacattacatggttttctgggatccaacccatc
ctgatatttggagaagcatcaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57450911_57451340
seq2: B6Ng01-123O06.b_49_478

seq1  GAATTCTTTTTATTTATTTATTTATTTTTTAAAAATTTTTGGTTTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTATTTATTTATTTATTTTTTAAAAATTTTTGGTTTTTCAA  50

seq1  GACAGGGTTCCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTCCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGA  100

seq1  CCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGCCTCCCGAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGCCTCCCGAGTGC  150

seq1  TGGGATTAAAGGAGTGCACTACCATGCCCAGCTTAGTTTGGAGAATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGAGTGCACTACCATGCCCAGCTTAGTTTGGAGAATTCTG  200

seq1  CTCTGGGCCTATGTGACCACAAGTCACATTTCCTTATGTGAGGAATGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGCCTATGTGACCACAAGTCACATTTCCTTATGTGAGGAATGTGG  250

seq1  CATGTGTTCCAGGCCAGGAATCTGGCAGACAGCAGGGAGTGGCCTAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCCAGGCCAGGAATCTGGCAGACAGCAGGGAGTGGCCTAAGTC  300

seq1  TTAAGTGTGTGCTTACTGAGTCTCCAGATCTCAACCTGCTCTACCTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTGTGCTTACTGAGTCTCCAGATCTCAACCTGCTCTACCTTACC  350

seq1  AAGCTTCCTGGCATGGTTTTACTGTCCAACATGACCCTGGGTCTGAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCTGGCATGGTTTTACTGTCCAACATGACCCTGGGTCTGAAATT  400

seq1  TAAGAAGTGTGTGGATGGGTGGGTGGGGTG  430
      ||||||||||||||||||||||||||||||
seq2  TAAGAAGTGTGTGGATGGGTGGGTGGGGTG  430

seq1: chr14_57597932_57598860
seq2: B6Ng01-123O06.g_69_992 (reverse)

seq1  GGGTGATGCTTCTCCAAGTATCAGGATTGGAGTTTGGATCCCCAGAAAAC  50
      ||||||||||||||||| ||||||||| ||   |||||| ||||||||||
seq2  GGGTGATGCTTCTCCAAATATCAGGATGGG---TTGGAT-CCCAGAAAAC  46

seq1  CATGTAAATGTCTGGGGCAGGC-ATAGTGGATTGATTACCTCTGAAGGTA  99
      ||||| |||||||||||||||| ||||||||||||||| ||||||| |||
seq2  CATGT-AATGTCTGGGGCAGGCAATAGTGGATTGATTA-CTCTGAA-GTA  93

seq1  GAGATCCCCA-GAGTAAGCTGCCAGC-AGGGTTGGCCATGGCTGTGAGCT  147
      |||||||||| |||||||| |||||| ||| ||| |||||||||||||||
seq2  GAGATCCCCAGGAGTAAGCAGCCAGCAAGGTTTGACCATGGCTGTGAGCT  143

seq1  CCTGATTTGATCAAGAGGCCAGGACTCACTGAATAAAGAGGAAGAGAGGT  197
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTGATTTGATCAAGAGGCCAGGACTCACTGAAT-AAGAGGAAGAGAGGT  192

seq1  TGAGGCTGATTTTTCACATCAGTCTTTAAGCCTTGGCCCTGGTCACAGGA  247
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAGGCTGATTTTTCACATCAGTCTTTAAGCTTTGGCCCTGGTCACAGGA  242

seq1  ATGCACTCTGCTCACACATACAAAAAAACCCAAAAAACCAACCAAACAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCTGCTCACACATACAAAAAAACCCAAAAAACCAACCAAACAAA  292

seq1  AAAACCCCATGTGCGTGCACATACTCACAGCATGAAAAATGAAGAGAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCATGTGCGTGCACATACTCACAGCATGAAAAATGAAGAGAAAA  342

seq1  AGAAAAAAAGATGTGCGTGCAGAATTGGCTTTTGATTAAACAAATTGTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAGATGTGCGTGCAGAATTGGCTTTTGATTAAACAAATTGTCA  392

seq1  TACAGTGAAATGGTGGAATCTATTTATTTATTTTCTTGTGGCTGGGTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGAAATGGTGGAATCTATTTATTTATTTTCTTGTGGCTGGGTTTT  442

seq1  GAGACAGGGCCTCACACAGTAGTAGCCTGAGCTATCTTCGAAGTACTCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGCCTCACACAGTAGTAGCCTGAGCTATCTTCGAAGTACTCTG  492

seq1  TAGCCCAGGCTGGCCAGATCTTGGTGATGCTGTCTCAGCCTGTCAAGCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAGGCTGGCCAGATCTTGGTGATGCTGTCTCAGCCTGTCAAGCAC  542

seq1  CAGGATGTCGGGTATAAGTGTATACGTGACCTAAGTGATGTGACCTTAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTCGGGTATAAGTGTATACGTGACCTAAGTGATGTGACCTTAGC  592

seq1  TGCCTTTAGAGATTACACATTTGAAAAAGGAAATGTACTAACATAGAGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAGAGATTACACATTTGAAAAAGGAAATGTACTAACATAGAGAC  642

seq1  TGTTCATAATATATATATATATGTATATGTATATGTATATATGTATATGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAATATATATATATATGTATATGTATATGTATATATGTATATGT  692

seq1  ATATGTATATGTATATGTATATGTATATGTATATATATATGTAGAAATAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATGTATATGTATATGTATATGTATATATATATGTAGAAATAG  742

seq1  GAATGAGTCAGATTCTATGTGAAAGTATGGGTAGAAGATAACGCAAACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTCAGATTCTATGTGAAAGTATGGGTAGAAGATAACGCAAACTG  792

seq1  AAAGCAGTGATGCCCCAGGAGGACTAAGATAAACATCTCCTTCATGGCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTGATGCCCCAGGAGGACTAAGATAAACATCTCCTTCATGGCTC  842

seq1  CTTCAAGTCTACGTGTTTGTACTTCTACCACAGCAAGTCCTGATGCAGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTCTACGTGTTTGTACTTCTACCACAGCAAGTCCTGATGCAGTG  892

seq1  TTTTACTTGAGGTGCAGGGACACTTGGAATTC  929
      ||||||||||||||||||||||||||||||||
seq2  TTTTACTTGAGGTGCAGGGACACTTGGAATTC  924