BAC Information

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BAC

Clone NameB6Ng01-125A21
Chromosome14 (Build37)2 (Build37)
Map Location 80,499,501 - 80,500,03097,812,181 - 97,813,151
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125A21.bB6Ng01-125A21.g
ACCDH927801DH927802
length9871,082
definitionDH927801|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A21, 5' end.DH927802|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,499,501 - 80,500,030)(97,812,181 - 97,813,151)
sequence
gaattcttacctgaggtatactgaatggctgagaagcacctgaaaaaatg
ttcagcatcattaatcatcaggaaaatgcaaatcaaaacaaccctgagtt
tcaacctcataccagtcagaatggctaagatcaaaaattctggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttttacaaccactctggaaatcagtgtggtggttccaca
gaaaattggacatagtactactggaggatcccacaatacctctcctgggc
atatatacagaaaatgttccaaccattaagaaggacacattctccactgt
gttcatagcagccttatttaaaatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacagtg
gagtactactcagctattaaaaagaatgaatttataaaattccttggcaa
atggataaacctggggggcatcatcctgtgtgaggtaacccaatcacaaa
agaactcacatgatacgtactcactgataattggatattagcccaggaat
ttagaatatccaagatataagatacaatttacaaaatacatgaagctcaa
gaagaactaataccaaagtgtggacactttgccccttcttagaattggga
acaaaacattcatggagttatagagacaaagtttggagctgagacgaaag
gatggaccatcttggtactgccatatccggggatatgtttgagaccatac
tgtgagaaagcgagcctttcacagtctcccaacctgacgagccaaatggc
tttgtgctaaggagttggttgtcattcctttctcattgttcccttcctgg
cacctgaggctgtaaagctgaattataatcccctcttccttatctcttcc
tgactcccagacttccaaggacatgagttatatgctg
gaattctttatatatattggatattagtcctctattggatgtaggattgg
taaagatctttccccaatctgttggttgctgttttgtcctatttacagtg
ttctttgccttacagaagttttgcaatcttatggggtcccatttgtttat
ttttgatctaagagcataaaccattggtgttctgttcaggaaattttctc
atgtgcccatgtgtttgatgctcttctccactctttcttctattagattc
agtatatctggtttcatgtagaggtccttgatccacttgaatttgagctt
tgtacaaggagataagaatggattgatttggatttttctacatgctgtca
gttgaaccagcaccattgttgaaaatactttttttttccactggatggtt
ttagctctttgtcaaagatcaagtcaccatacatatgtgggttcatttct
ggattttcaattttattccattgatcatcctgcttgtctctgtaccaata
ccatatagcttttatcactattgctatgtaatacagcttgaggtggggaa
ttttgactccctgagatgttattttattgttgagaatagtttttgctatg
ctgggtttttttgttattacaaatgaactggcaaaatgaagcactctaaa
aaccatgtcatattcccattcatgtaaaatgtttgatagtgcaatcatga
tgtgcaagtattctcagatatataatcttccactggagattagctgaccc
aacagtgtcacacagtgaatatttatcaacatcttcatggcttgggctac
acaaattgattttcaaggtttaaaaaaatatagggcacaaaattaaatag
gtagagacggcaagtagacctggaagattggtggaatgatataatcaatt
catcttgaatgaaattctcagaactataaaatataaatatatgtaatgtt
acagcatttgctacacaattctccagctttgtttttttttttttgtagta
atttatcccccaaataaaatagagcattttcctctgagaattccaaacac
atccaatttcctgatttatttccgtacctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80499501_80500030
seq2: B6Ng01-125A21.b_198_727 (reverse)

seq1  CAAAGTGTCCACACTTTGGTCTTCGTTCTTCTTGAGTTTCATATGTTTTG  50
      |||||||||||||||||||| || |||||||||||| ||||| | |||||
seq2  CAAAGTGTCCACACTTTGGTATTAGTTCTTCTTGAGCTTCATGTATTTTG  50

seq1  CAAGTTGTAACTTATGTCTTGGTTATTCTAAGTTTCTGGGCTAATATCCA  100
       || ||||| ||||| |||||| |||||||| || |||||||||||||||
seq2  TAAATTGTATCTTATATCTTGGATATTCTAAATTCCTGGGCTAATATCCA  100

seq1  CTTATCAATGAGTACATATCATGTGAGTTCTTTTGTGATTGGGTTACCTC  150
       |||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTATCAGTGAGTACGTATCATGTGAGTTCTTTTGTGATTGGGTTACCTC  150

seq1  ACTCAGGATGATACCCTCCAGATCCATCTATTTGCCTAGGAATTTCATAA  200
      || ||||||||| ||| |||| |  ||| ||||||| |||||||| ||||
seq2  ACACAGGATGATGCCCCCCAGGTTTATCCATTTGCCAAGGAATTTTATAA  200

seq1  ATTCATTCTTTTTAATAGCTGAGTATTACTCCATTGTGTAAATGTACCAC  250
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  ATTCATTCTTTTTAATAGCTGAGTAGTACTCCACTGTGTAAATGTACCAC  250

seq1  ATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCT  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCT  300

seq1  TCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTTTCCT  350
      |||||||||| ||||||||||||||||||||| ||||||| |||| ||||
seq2  TCTGGCTATTTTAAATAAGGCTGCTATGAACACAGTGGAGAATGTGTCCT  350

seq1  TCTTATCGGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGTG  400
      |||||  ||||||||||| ||||| |||||||||||||||||||||||||
seq2  TCTTAATGGTTGGAACATTTTCTGTATATATGCCCAGGAGAGGTATTGTG  400

seq1  GGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACTGA  450
      ||||||||  ||||||||||||||||||||||| |||||  ||| |||||
seq2  GGATCCTCCAGTAGTACTATGTCCAATTTTCTGTGGAACCACCACACTGA  450

seq1  TTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAATAATGGAGGAGTG  500
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TTTCCAGAGTGGTTGTAAAAGCTTGCAATCCCACCAACAATGGAGGAGTG  500

seq1  TTCCTCTTTCTCCACATCCTCACCAGCATC  530
      ||||||||||||||||||||| ||||||||
seq2  TTCCTCTTTCTCCACATCCTCGCCAGCATC  530

seq1: chr2_97812181_97813151
seq2: B6Ng01-125A21.g_196_1146

seq1  TGGGGTCCCATTTGTTTATTTTTGATCTAAGAGCATAAACCATTGGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCCATTTGTTTATTTTTGATCTAAGAGCATAAACCATTGGTGTT  50

seq1  CTGTTCAGGAAATTTTCTCATGTGCCCATGTGTTTGATGCTCTTCTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGAAATTTTCTCATGTGCCCATGTGTTTGATGCTCTTCTCCAC  100

seq1  TCTTTCTTCTATTAGATTCAGTATATCTGGTTTCATGTAGAGGTCCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCTATTAGATTCAGTATATCTGGTTTCATGTAGAGGTCCTTGA  150

seq1  TCCACTTGAATTTGAGCTTTGTACAAGGAGATAAGAATGGATTGATTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGAATTTGAGCTTTGTACAAGGAGATAAGAATGGATTGATTTGG  200

seq1  ATTTTTCTACATGCTGTCAGTTGAACCAGCACCATTGTTGAAAATACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTACATGCTGTCAGTTGAACCAGCACCATTGTTGAAAATACTTT  250

seq1  TTTTTTCCACTGGATGGTTTTAGCTCTTTGTCAAAGATCAAGTCACCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCACTGGATGGTTTTAGCTCTTTGTCAAAGATCAAGTCACCATA  300

seq1  CATATGTGGGTTCATTTCTGGATTTTCAATTTTATTCCATTGATCATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGGGTTCATTTCTGGATTTTCAATTTTATTCCATTGATCATCCT  350

seq1  GCTTGTCTCTGTACCAATACCATATAGCTTTTATCACTATTGCTATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTCTGTACCAATACCATATAGCTTTTATCACTATTGCTATGTAA  400

seq1  TACAGCTTGAGGTGGGGAATTTTGACTCCCTGAGATGTTATTTTATTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTGAGGTGGGGAATTTTGACTCCCTGAGATGTTATTTTATTGTT  450

seq1  GAGAATAGTTTTTGCTATGCTGGGTTTTTTTGTTATTACAAATGAACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGTTTTTGCTATGCTGGGTTTTTTTGTTATTACAAATGAACTGG  500

seq1  CAAAATGAAGCACTCTAAAAACCATGTCATATTCCCATTCATGTAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAGCACTCTAAAAACCATGTCATATTCCCATTCATGTAAAATG  550

seq1  TTTGATAGTGCAATCATGATGTGCAAGTATTCTCAGATATATAATCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGTGCAATCATGATGTGCAAGTATTCTCAGATATATAATCTTCC  600

seq1  ACTGGAGATTAGCTGACCCAACAGGTGTCACACAGTGAATATTTATCAAC  650
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTGGAGATTAGCTGACCCAACA-GTGTCACACAGTGAATATTTATCAAC  649

seq1  ATCTTCATGGCTTGGGCTACACAAATTGATTTTCAAGGTTTAAAAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCTTCATGGCTTGGGCTACACAAATTGATTTTCAAGGTTT-AAAAAAAT  698

seq1  ATAGGGCACAAAATTAAATAGGTAGAGACGGCAAGTAGACCTGGGAAGAA  750
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  ATAGGGCACAAAATTAAATAGGTAGAGACGGCAAGTAGACCT-GGAAGA-  746

seq1  TTGGGTGGAATGAATATAATCAATTCATCTTGAATGAAATTCTCAAGAAC  800
       | ||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  -TTGGTGGAATG-ATATAATCAATTCATCTTGAATGAAATTCTC-AGAAC  793

seq1  TAATAAAATAATAAATATAATGTAATGTTAACAGCAATTTTGCTACACAA  850
      | ||||||| |||||||| |||||||||| ||||||  |||||||||| |
seq2  T-ATAAAAT-ATAAATAT-ATGTAATGTT-ACAGCA--TTTGCTACAC-A  836

seq1  ATTCTCCAGCTTTGTTTTTTTTTTTTTTGTTAGT-ATTTAT-CCCCACAT  898
      |||||||||||||||||||||||||||   |||| |||||| ||||| ||
seq2  ATTCTCCAGCTTTGTTTTTTTTTTTTT--GTAGTAATTTATCCCCCAAAT  884

seq1  AAAATAGAGCATTTTTCTCTTAGAATTTCCAAAACACATTCCATTTTCTT  948
      ||||||||||||||| |||| ||||||  | ||||||| |||| |||| |
seq2  AAAATAGAGCATTTTCCTCTGAGAATT--CCAAACACA-TCCAATTTCCT  931

seq1  GTATTTAATTTTTCGTACCTGAA  971
      | |||||  ||| ||||||||||
seq2  G-ATTTA--TTTCCGTACCTGAA  951