BAC Information

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BAC

Clone NameB6Ng01-125I04
Chromosome14 (Build37)
Map Location 4,067,337 - 4,175,908
singlet/doubletdoublet
Overlap geneLOC100041012, LOC100041019, ENSMUSG00000068790
Upstream geneLOC100040671, LOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755, LOC100040767, LOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897
Downstream geneLOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125I04.bB6Ng01-125I04.g
ACCDH928126DH928127
length9611,183
definitionDH928126|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I04, 5' end.DH928127|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,174,945 - 4,175,908)(4,067,337 - 4,068,553)
sequence
gaattctgtgttgatcagagcgggctgcatggctaggtttttataagtaa
cggatacctgaactttgaggaattaattgcctggctcctggatgtgaagc
tgtgcaatgtgtctctaagcaatcagcatcctttcaaagagtaagaaatg
gaacccgtcttctttcccaaataggcatgggccttagaccacctttcact
tcaatcacccttgactggattctgggaaatgttactatataaaacccgaa
agtttaatgtgtaggttgaaatacaggatagctgccaaagtgacctttca
ctatatagagtgtggggaagagaacattagaatcataatcacattttggt
cccagcttgtgccctctgtcttctttacattaaaaggaaaagtctgaact
gtgtcaggccttttactaggggtctttgtcttgacttgtctgtgaccaaa
tagtcagactaagacaaaggtcaataaaagggcattgttttgtttttggc
cgtgtataggctttctgtactctaggcactgatctggatctccgaccaag
gtcatttaatgctattgtttcttagaaagttctcggcatgtgtacttgta
ggtacagaagttcatactatagggccagaaggacgtttgaagtccatttt
accccgtgttttccctcgctaaagggaataactgaagcacaagagaggct
gtctctgtgtttgagaaacatggcagcactctcttgctgaatgagctaaa
gggatttcacgttttcagtgtagttaaaatctcttagagctggcagcgga
tcattgctgggcttaaggttgcacctgaaacctgaaagaatcaaaacccc
aatcttagtttccaggattttcaagttcaggctaagtgacaactaaggag
gaacctgaagggctaaagaattgatctactgaagagaccaccctctcctc
tccccctcccc
gaattcactgtctttatcttttctctccctccatcttcttcttgggactc
agaatggtctcccctgcccctgggccatcaagtatgcaaattcttttgtg
tttacctatctgcagggtctgctagaaatacttcaacccaaaattccaaa
atgactaagaagagatcaaaaagaaatgaactagaagaactgaaattgga
tatgaggaagatcagcaatgacatggaggaaatgtgtggaatcctgaacc
tttacatgtatgaggatttgaactacaggttggaattatggcccagtacc
ctgttgcctgtattctgccatctattaccctaatttccttttatgaatgg
agtgggtcatctctcatcattcaattaagtagccctgacaggtgtttaat
tgttggataaacaaggtgctgtgtgtttattatcatcttcttttgtactt
gaccttggggtttttgcattctgattgttgctgtgaacagctagaatgtc
ctgctcacacttactgtcactcagtgtgtgaatgcaatgcctgcaggctt
caaggctttactctgatattgttcattatattctgagagatggcacctgt
ctggatttatttggcattctaattgtgtctgtgtgtgtgaacatagttgc
gtgtgttttgttcaggactggggctctgggacctttgatggggtctgagg
atttgtgtgatgcacagtttgcaggtcctgttagtgttgagtccatagag
atccaaagtgatcaccagggaagtttgctcctggtgtttccttgttgtca
cacaggaatctcctggaggagatgtgataaagcctttctcctgtaaatac
tagtttgtgtcctctgggaattcacataacacagaaaccaagaaatgaga
atccctgccttaaaaatagaggaaagtcattacagatatctactggacct
tgcctgtgcacagtgtagtgtaaattgtcatagagtactctatctacatg
cttgcccggagccttgaagtcagctagctcatttggtctccttgcttctg
ctgctcttgcaagaaataagttatagcacttaggacccagtttgattgac
cagatgtggcatgccttgcctggggatacttgatagcggtttgcactgaa
ttatgatgcttatcagacattatttgctcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4174945_4175908
seq2: B6Ng01-125I04.b_49_1009 (reverse)

seq1  GGGGGGGGGG---GGAGGGGGTGTTCTCTTCAGTAGATCAATTCTTTTAG  47
      |||| |||||   |||| ||||| |||||||||||||||||||| |||||
seq2  GGGGAGGGGGAGAGGAGAGGGTGGTCTCTTCAGTAGATCAATTC-TTTAG  49

seq1  CCCTTCAGGTTCCTCCCTTAGTTTGTCACTTAGCCTTGAACTTGAAAATT  97
      |||||||||||||| |||||| ||||||||||||| |||||||||||| |
seq2  CCCTTCAGGTTCCT-CCTTAG-TTGTCACTTAGCC-TGAACTTGAAAA-T  95

seq1  CCTGGAAACTAAGATTTGGGGTTTTGATTCTTTCAGGTTTCAGGTGCAAC  147
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTGGAAACTAAGA-TTGGGGTTTTGATTCTTTCAGGTTTCAGGTGCAAC  144

seq1  CTTAAGCCCAGCAATGATCCGCTGCCAGCTCTAAGAGATTTTAACTACAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCCCAGCAATGATCCGCTGCCAGCTCTAAGAGATTTTAACTACAC  194

seq1  TGAAAACGTGAAATCCCTTTAGCTCATTCAGCAAGAGAGTGCTGCCATGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACGTGAAATCCCTTTAGCTCATTCAGCAAGAGAGTGCTGCCATGT  244

seq1  TTCTCAAACACAGAGACAGCCTCTCTTGTGCTTCAGTTATTCCCTTTAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAACACAGAGACAGCCTCTCTTGTGCTTCAGTTATTCCCTTTAGC  294

seq1  GAGGGAAAACACGGGGTAAAATGGACTTCAAACGTCCTTCTGGCCCTATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAACACGGGGTAAAATGGACTTCAAACGTCCTTCTGGCCCTATA  344

seq1  GTATGAACTTCTGTACCTACAAGTACACATGCCGAGAACTTTCTAAGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACTTCTGTACCTACAAGTACACATGCCGAGAACTTTCTAAGAAA  394

seq1  CAATAGCATTAAATGACCTTGGTCGGAGATCCAGATCAGTGCCTAGAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCATTAAATGACCTTGGTCGGAGATCCAGATCAGTGCCTAGAGTA  444

seq1  CAGAAAGCCTATACACGGCCAAAAACAAAACAATGCCCTTTTATTGACCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCCTATACACGGCCAAAAACAAAACAATGCCCTTTTATTGACCT  494

seq1  TTGTCTTAGTCTGACTATTTGGTCACAGACAAGTCAAGACAAAGACCCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTAGTCTGACTATTTGGTCACAGACAAGTCAAGACAAAGACCCCT  544

seq1  AGTAAAAGGCCTGACACAGTTCAGACTTTTCCTTTTAATGTAAAGAAGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGGCCTGACACAGTTCAGACTTTTCCTTTTAATGTAAAGAAGAC  594

seq1  AGAGGGCACAAGCTGGGACCAAAATGTGATTATGATTCTAATGTTCTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCACAAGCTGGGACCAAAATGTGATTATGATTCTAATGTTCTCTT  644

seq1  CCCCACACTCTATATAGTGAAAGGTCACTTTGGCAGCTATCCTGTATTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACTCTATATAGTGAAAGGTCACTTTGGCAGCTATCCTGTATTTC  694

seq1  AACCTACACATTAAACTTTCGGGTTTTATATAGTAACATTTCCCAGAATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACACATTAAACTTTCGGGTTTTATATAGTAACATTTCCCAGAATC  744

seq1  CAGTCAAGGGTGATTGAAGTGAAAGGTGGTCTAAGGCCCATGCCTATTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGGGTGATTGAAGTGAAAGGTGGTCTAAGGCCCATGCCTATTTG  794

seq1  GGAAAGAAGACGGGTTCCATTTCTTACTCTTTGAAAGGATGCTGATTGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGACGGGTTCCATTTCTTACTCTTTGAAAGGATGCTGATTGCT  844

seq1  TAGAGACACATTGCACAGCTTCACATCCAGGAGCCAGGCAATTAATTCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACACATTGCACAGCTTCACATCCAGGAGCCAGGCAATTAATTCCT  894

seq1  CAAAGTTCAGGTATCCGTTACTTATAAAAACCTAGCCATGCAGCCCGCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCAGGTATCCGTTACTTATAAAAACCTAGCCATGCAGCCCGCTC  944

seq1  TGATCAACACAGAATTC  964
      |||||||||||||||||
seq2  TGATCAACACAGAATTC  961

seq1: chr14_4067337_4068553
seq2: B6Ng01-125I04.g_66_1248

seq1  GAATTCACTGTCTTTATCTTTTCTCTCCCTCCATCTTCTTCTTGGGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTTTATCTTTTCTCTCCCTCCATCTTCTTCTTGGGACTC  50

seq1  AGAATGGTCTCCCCTGCCCCTGGGCCATCAAGTATGCAAATTCTTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTCTCCCCTGCCCCTGGGCCATCAAGTATGCAAATTCTTTTGTG  100

seq1  TTTACCTATCTGCAGGGTCTGCTAGAAATACTTCAACCCAAAATTCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTATCTGCAGGGTCTGCTAGAAATACTTCAACCCAAAATTCCAAA  150

seq1  ATGACTAAGAAGAGATCAAAAAGAAATGAACTAGAAGAACTGAAATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAGAAGAGATCAAAAAGAAATGAACTAGAAGAACTGAAATTGGA  200

seq1  TATGAGGAAGATCAGCAATGACATGGAGGAAATGTGTGGAATCCTGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGAAGATCAGCAATGACATGGAGGAAATGTGTGGAATCCTGAACC  250

seq1  TTTACATGTATGAGGATTTGAACTACAGGTTGGAATTATGGCCCAGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTATGAGGATTTGAACTACAGGTTGGAATTATGGCCCAGTACC  300

seq1  CTGTTGCCTGTATTCTGCCATCTATTACCCTAATTTCCTTTTATGAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCTGTATTCTGCCATCTATTACCCTAATTTCCTTTTATGAATGG  350

seq1  AGTGGGTCATCTCTCATCATTCAATTAAGTAGCCCTGACAGGTGTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTCATCTCTCATCATTCAATTAAGTAGCCCTGACAGGTGTTTAAT  400

seq1  TGTTGGATAAACAAGGTGCTGTGTGTTTATTATCATCTTCTTTTGTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGATAAACAAGGTGCTGTGTGTTTATTATCATCTTCTTTTGTACTT  450

seq1  GACCTTGGGGTTTTTGCATTCTGATTGTTGCTGTGAACAGCTAGAATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGGGTTTTTGCATTCTGATTGTTGCTGTGAACAGCTAGAATGTC  500

seq1  CTGCTCACACTTACTGTCACTCAGTGTGTGAATGCAATGCCTGCAGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACACTTACTGTCACTCAGTGTGTGAATGCAATGCCTGCAGGCTT  550

seq1  CAAGGCTTTACTCTGATATTGTTCATTATATTCTGAGAGATGGCACCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTTACTCTGATATTGTTCATTATATTCTGAGAGATGGCACCTGT  600

seq1  CTGGATTTATTTGGCATTCTAATTGTGTCTGTGTGTGTGAACATAGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTATTTGGCATTCTAATTGTGTCTGTGTGTGTGAACATAGTTGC  650

seq1  GTGTGTTTTGTTCAGGACTGGGGCTCTGGGACCTTTGATGGGGTCTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTGTTCAGGACTGGGGCTCTGGGACCTTTGATGGGGTCTGAGG  700

seq1  ATTTGTGTGATGCACAGTTTGCAGGTCCTGTTAGTGTTGAGTCCATAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGATGCACAGTTTGCAGGTCCTGTTAGTGTTGAGTCCATAGAG  750

seq1  ATCCAAAGTGATCACCAGGGAAGTTTGCTCCTGGTGTTTCCTTGTTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGTGATCACCAGGGAAGTTTGCTCCTGGTGTTTCCTTGTTGTCA  800

seq1  CACAGGAATCTCCTGGAGGAGATGTGATAAAGCCTTTCTCCTGTAAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAATCTCCTGGAGGAGATGTGATAAAGCCTTTCTCCTGTAAATAC  850

seq1  TAG-TTGTGTCCTCTGGGAATTCACATAACAACAGAAACCAAGAAATGAG  899
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAGTTTGTGTCCTCTGGGAATTCACATAAC-ACAGAAACCAAGAAATGAG  899

seq1  AATCCCTGCCTTAAAAATAAGAGGAAAGTCATTACAGATATCTACTGGAC  949
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  AATCCCTGCCTTAAAAAT-AGAGGAAAGTCATTACAGATATCTACTGGA-  947

seq1  CCTTGCCTGTGGCACAGTGTAGTGTAAAATTGTCATAGAAGTACTCTATT  999
      |||||||||| |||||||||||||| |||||||||||| |||||||||| 
seq2  CCTTGCCTGT-GCACAGTGTAGTGT-AAATTGTCATAG-AGTACTCTAT-  993

seq1  CCTACATGCTTGCCCGGGAAGCCCTTGAAGGTCAGCTAGCTCCATTTGGT  1049
       ||||||||||||||||  || ||||||| ||||||||||| ||||||||
seq2  -CTACATGCTTGCCCGG--AG-CCTTGAA-GTCAGCTAGCT-CATTTGGT  1037

seq1  CTCCTGGC-TCTGCTGTCCTCTGCCCAGGATAGTAAGTTTAATTAGCACC  1098
      ||||| || |||||||  ||||  | ||   | ||||||    |||||| 
seq2  CTCCTTGCTTCTGCTG--CTCTTGCAAG--AAATAAGTT---ATAGCACT  1080

seq1  TAGGGGACCCAGTTTGAATGAGCCAGGATGTGGCATGCACTTGGCTTGGG  1148
      ||  ||||||||||||| ||| ||| |||||||||||| |||| || |||
seq2  TA--GGACCCAGTTTGATTGA-CCA-GATGTGGCATGC-CTTGCCTGGGG  1125

seq1  TAGTACATGATATAGCCTGTTTGCACATGATTATTGATTCCTTAATTCAG  1198
         ||| |||||    | |||||||| ||| |  ||| | ||||  ||||
seq2  --ATACTTGATA---GCGGTTTGCAC-TGAATTATGA-TGCTTA--TCAG  1166

seq1  CATATTATTTGCTTCTTGG  1217
       | ||||||||| ||||||
seq2  -ACATTATTTGC-TCTTGG  1183