BAC Information

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BAC

Clone NameB6Ng01-125M06
Chromosome14 (Build37)
Map Location 101,960,295 - 102,189,050
singlet/doubletdoublet
Overlap geneTbc1d4, Commd6, Uchl3, Lmo7
Upstream gene1700110M21Rik, LOC100043421, LOC382936
Downstream geneLOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125M06.bB6Ng01-125M06.g
ACCDH928309DH928310
length1,0961,046
definitionDH928309|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M06, 5' end.DH928310|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,960,295 - 101,961,386)(102,187,997 - 102,189,050)
sequence
gaattcaacaaaaggtctttctccgaatactaaattaaataagccattca
aacagcccacgcccatccttcactcttccaagtgtatactccaaaagatg
tcttcttttttgatgtccctttttctcaaatatgaccagagggtcactgg
agctgtttatagggcagaacaggatgctggcatcacagggaaggggcgcc
gatgggcttctctgttgtctttggtgcctttgctttcggccagcttagcg
ctccaggctcactgagggacagatgggaagtcgcactaaccaaatggtta
ttatctgtgcagatggctgtctctgttttgaatcgtccagtcttgtactt
cctacttcatttgtataggtctggacagtcgctccctgaaggcttttttg
tatgtaattagggctcctcattgtctccctgcctgaccctccctgtgagt
gaggcatattccattcccagtgcacttgttcatgctctcaccctcccaga
ctgatccacccagaaccgagaatacccttgctgataacgagcgtgactca
gactccactcctgagggattcccagcaaatggaccgcaccgcaagcttaa
accaggctatttctggagctgtcccagagacagtaaatgggatgccagac
tgacaagtgagttttgtgacaacttactaaactccttcttcaagaatcag
atgtggagactacctaaaaacgagagctcgtgcaatctgctaattgatct
gtgggaacaagtatgagcaatattttctgggctttccctctctgggatct
tcatatttgagaatttgagaaaatgcacactatgaattttttcaaaggta
tggatgtagggatttaagaatcactgtacaagtgtcttttacagtttgta
ttttctaaaacaatcttttattaaatttaaaggatgatgctttttgctaa
gaggccattgggcacgccataagttcaggagagacaagccattgctttgt
cattcccatttatggagcagccactggctgtccaggtagctgagctgtgc
tgatatttatggagtttatccatttattatcaagaagttgaatgta
gaattctttttgaatacttgatccttctctaagtattctatgactattag
aaaaggcagtggacgtgcacacctttaatcccagtactcgggaggcagaa
gcaggtggatctccaagttcaaggtcagcttggtgtacacagtttcagga
cagccaggactacatagagaaaccctgcctcaaaagcccccaaaaaatgg
aaaaagaaggaaggaaagaaagcttgcattatatatatatatatatatat
attactggttaccctatctcagaaacccaaagaaaactgattgagtttta
aaacagcaatttgtacaaccatataaaagtaaagtcagctataaccctgc
ctaaagaactaaagcaaaatgatacaaaactctgcgagttttaaaacaaa
ggaaagcagatattttcagtaagaatttctttcaatacaagagaccacct
gagctgcattccttaaagtcactttccaacatctccaggtgcccaagtaa
ggccaggtcagaattctggcacccatgagcctgtgttccaactcccgccc
tgccagtacctaccatcgactgtagatactgcttccctgtttgagctcat
ctgtgaaatggaaacgaaaggtatccatgtgtcctgtggagtcaggctgg
gaattaaataagatgatacacacgatatccacagccctcctctggttcag
cagtcccacatagctattactgcagttgctagccagccagagagccttcc
acagtagagaaaaagctttcccagagaaaatgagtgtctaatttgcaagg
tattaacataatattccttacttaagaagaatctgactccaaagctacta
aatcaattccgtatctggaaacattgtaaaaattattaatgatctataaa
acatctcatagcatggtgaaggcagtttgtttctaaaattaaattatact
ttcaaatgagatccatcgttacattaggaaaaaatatatttggaagaatt
agagttctgaaaaaaaaacctggtggggcagttagtccttgggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_101960295_101961386
seq2: B6Ng01-125M06.b_48_1143

seq1  GAATTCAACAAAAGGTCTTTCTCCGAATACTAAATTAAATAAGCCATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAAAGGTCTTTCTCCGAATACTAAATTAAATAAGCCATTCA  50

seq1  AACAGCCCACGCCCATCCTTCACTCTTCCAAGTGTATACTCCAAAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCACGCCCATCCTTCACTCTTCCAAGTGTATACTCCAAAAGATG  100

seq1  TCTTCTTTTTTGATGTCCCTTTTTCTCAAATATGACCAGAGGGTCACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTTTGATGTCCCTTTTTCTCAAATATGACCAGAGGGTCACTGG  150

seq1  AGCTGTTTATAGGGCAGAACAGGATGCTGGCATCACAGGGAAGGGGCGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTATAGGGCAGAACAGGATGCTGGCATCACAGGGAAGGGGCGCC  200

seq1  GATGGGCTTCTCTGTTGTCTTTGGTGCCTTTGCTTTCGGCCAGCTTAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCTTCTCTGTTGTCTTTGGTGCCTTTGCTTTCGGCCAGCTTAGCG  250

seq1  CTCCAGGCTCACTGAGGGACAGATGGGAAGTCGCACTAACCAAATGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCTCACTGAGGGACAGATGGGAAGTCGCACTAACCAAATGGTTA  300

seq1  TTATCTGTGCAGATGGCTGTCTCTGTTTTGAATCGTCCAGTCTTGTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTGCAGATGGCTGTCTCTGTTTTGAATCGTCCAGTCTTGTACTT  350

seq1  CCTACTTCATTTGTATAGGTCTGGACAGTCGCTCCCTGAAGGCTTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCATTTGTATAGGTCTGGACAGTCGCTCCCTGAAGGCTTTTTTG  400

seq1  TATGTAATTAGGGCTCCTCATTGTCTCCCTGCCTGACCCTCCCTGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATTAGGGCTCCTCATTGTCTCCCTGCCTGACCCTCCCTGTGAGT  450

seq1  GAGGCATATTCCATTCCCAGTGCACTTGTTCATGCTCTCACCCTCCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATATTCCATTCCCAGTGCACTTGTTCATGCTCTCACCCTCCCAGA  500

seq1  CTGATCCACCCAGAACCGAGAATACCCTTGCTGATAACGAGCGTGACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCACCCAGAACCGAGAATACCCTTGCTGATAACGAGCGTGACTCA  550

seq1  GACTCCACTCCTGAGGGATTCCCAGCAAATGGACCGCACCGCAAGCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACTCCTGAGGGATTCCCAGCAAATGGACCGCACCGCAAGCTTAA  600

seq1  ACCAGGCTATTTCTGGAGCTGTCCCAGAGACAGTAAATGGGATGCCAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTATTTCTGGAGCTGTCCCAGAGACAGTAAATGGGATGCCAGAC  650

seq1  TGACAAGTGAGTTTTGTGACAACTTACTAAACTCCTTCTTCAAGAATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTGAGTTTTGTGACAACTTACTAAACTCCTTCTTCAAGAATCAG  700

seq1  ATGTGGAGACTACCTAAAAACGAGAGCTCGTGCAATCTGCTAATTGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGACTACCTAAAAACGAGAGCTCGTGCAATCTGCTAATTGATCT  750

seq1  GTGGGAACAAGTATGAGCAATATTTTCTGGGCTTTCCCTCTCTGGGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAACAAGTATGAGCAATATTTTCTGGGCTTTCCCTCTCTGGGATCT  800

seq1  TCATATTTGAGAAATTTGAGAAAATGCACACTATGAATTTTTTCAAAGGT  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTGAG-AATTTGAGAAAATGCACACTATGAATTTTTTCAAAGGT  849

seq1  ATGGATGTAGGGATTTAAGAATCACTGTACAAGTGTCTTTTACAGTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTAGGGATTTAAGAATCACTGTACAAGTGTCTTTTACAGTTTGT  899

seq1  ATTTTCT-AAACAA-CCTTTATT-AATTTAAA-GATGATGCTTTTTGCTA  946
      ||||||| |||||| | |||||| |||||||| |||||||||||||||||
seq2  ATTTTCTAAAACAATCTTTTATTAAATTTAAAGGATGATGCTTTTTGCTA  949

seq1  AGAAGCCATT-GGCACGCCATAAAGTTCAGGAGGAGACAAGCCATTGCTT  995
      ||| |||||| |||||||||| |||||||||| |||||||||||||||||
seq2  AGAGGCCATTGGGCACGCCAT-AAGTTCAGGA-GAGACAAGCCATTGCTT  997

seq1  TGTCATTCCCATGTAGTGAGCAAGCACTGGCTGTCCA-GTAGCTGAGCTG  1044
      |||||||||||| ||  |||||  ||||||||||||| ||||||||||||
seq2  TGTCATTCCCATTTATGGAGCAGCCACTGGCTGTCCAGGTAGCTGAGCTG  1047

seq1  TGCTGATA-TTATGGAGTTATACCATTTATAATCAAGAAGTTGAATGTA  1092
      |||||||| ||||||||||   |||||||| ||||||||||||||||||
seq2  TGCTGATATTTATGGAGTTTATCCATTTATTATCAAGAAGTTGAATGTA  1096

seq1: chr14_102187997_102189050
seq2: B6Ng01-125M06.g_68_1113 (reverse)

seq1  AGACCCAAAGGACTAAAACTGCCACA-CAGGTTTTTTTTTTTCAGAACTC  49
      |||||| |||||||  ||||||| || ||||  |||||||||||||||||
seq2  AGACCC-AAGGACT--AACTGCCCCACCAGG--TTTTTTTTTCAGAACTC  45

seq1  TAATTTCTTCCAAATATTTTTTTTCCTAATGTAACGATGGAATCTCATTT  99
      ||| ||||||||||||| |||||||||||||||||||||| |||||||||
seq2  TAA-TTCTTCCAAATATATTTTTTCCTAATGTAACGATGG-ATCTCATTT  93

seq1  GAAAGTATAATTTAATTTTTAGAAACAAACTGCCTTCACCATGCTATGAG  149
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAAGTATAATTTAA-TTTTAGAAACAAACTGCCTTCACCATGCTATGAG  142

seq1  ATGTTTTATAGATCATT-ATAATTTTTACAATGTTTCCAGATACGGAATT  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGTTTTATAGATCATTAATAATTTTTACAATGTTTCCAGATACGGAATT  192

seq1  GATTTAGTAGCTTTGGAGTCAGATTCTTTCTTTAAGTAAGGAATATTATG  248
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  GATTTAGTAGCTTTGGAGTCAGATTCTT--CTTAAGTAAGGAATATTATG  240

seq1  TTAATACCTTGCAAATTAGACACTCATTTTCTCTGGGAAAGCTTTTTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACCTTGCAAATTAGACACTCATTTTCTCTGGGAAAGCTTTTTCTC  290

seq1  TACTGTGGAAGGCTCTCTGGCTGGCTAGCAACTGCAGTAATAGCTATGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGAAGGCTCTCTGGCTGGCTAGCAACTGCAGTAATAGCTATGTG  340

seq1  GGACTGCTGAACCAGAGGAGGGCTGTGGATATCGTGTGTATCATCTTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTGAACCAGAGGAGGGCTGTGGATATCGTGTGTATCATCTTATT  390

seq1  TAATTCCCAGCCTGACTCCACAGGACACATGGATACCTTTCGTTTCCATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCAGCCTGACTCCACAGGACACATGGATACCTTTCGTTTCCATT  440

seq1  TCACAGATGAGCTCAAACAGGGAAGCAGTATCTACAGTCGATGGTAGGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATGAGCTCAAACAGGGAAGCAGTATCTACAGTCGATGGTAGGTA  490

seq1  CTGGCAGGGCGGGAGTTGGAACACAGGCTCATGGGTGCCAGAATTCTGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGGCGGGAGTTGGAACACAGGCTCATGGGTGCCAGAATTCTGAC  540

seq1  CTGGCCTTACTTGGGCACCTGGAGATGTTGGAAAGTGACTTTAAGGAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTACTTGGGCACCTGGAGATGTTGGAAAGTGACTTTAAGGAATG  590

seq1  CAGCTCAGGTGGTCTCTTGTATTGAAAGAAATTCTTACTGAAAATATCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGTGGTCTCTTGTATTGAAAGAAATTCTTACTGAAAATATCTG  640

seq1  CTTTCCTTTGTTTTAAAACTCGCAGAGTTTTGTATCATTTTGCTTTAGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTGTTTTAAAACTCGCAGAGTTTTGTATCATTTTGCTTTAGTT  690

seq1  CTTTAGGCAGGGTTATAGCTGACTTTACTTTTATATGGTTGTACAAATTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGCAGGGTTATAGCTGACTTTACTTTTATATGGTTGTACAAATTG  740

seq1  CTGTTTTAAAACTCAATCAGTTTTCTTTGGGTTTCTGAGATAGGGTAACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAAAACTCAATCAGTTTTCTTTGGGTTTCTGAGATAGGGTAACC  790

seq1  AGTAATATATATATATATATATATATAATGCAAGCTTTCTTTCCTTCCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATATATATATATATATATATAATGCAAGCTTTCTTTCCTTCCTT  840

seq1  CTTTTTCCATTTTTTGGGGGCTTTTGAGGCAGGGTTTCTCTATGTAGTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCATTTTTTGGGGGCTTTTGAGGCAGGGTTTCTCTATGTAGTCC  890

seq1  TGGCTGTCCTGAAACTGTGTACACCAAGCTGACCTTGAACTTGGAGATCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGAAACTGTGTACACCAAGCTGACCTTGAACTTGGAGATCC  940

seq1  ACCTGCTTCTGCCTCCCGAGTACTGGGATTAAAGGTGTGCACGTCCACTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTCTGCCTCCCGAGTACTGGGATTAAAGGTGTGCACGTCCACTG  990

seq1  CCTTTTCTAATAGTCATAGAATACTTAGAGAAGGATCAAGTATTCAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTAATAGTCATAGAATACTTAGAGAAGGATCAAGTATTCAAAAA  1040

seq1  GAATTC  1054
      ||||||
seq2  GAATTC  1046