BAC Information

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BAC

Clone NameB6Ng01-126H19
Chromosome14 (Build37)
Map Location 59,019,160 - 59,092,972
singlet/doubletdoublet
Overlap genenone
Upstream geneAU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
Downstream geneEG668177, EG668182, 1700129C05Rik, EG380907, Rcbtb1, EG628693, Phf11, EG236451, D14Ertd668e, EG628705, Setdb2, Cab39l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126H19.bB6Ng01-126H19.g
ACCDH928846DH928847
length1,1891,049
definitionDH928846|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H19, 5' end.DH928847|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,019,160 - 59,020,355)(59,091,915 - 59,092,972)
sequence
gaattccatttatgactcactttcttcactagcctggtggtaatttggtc
cagtatttttggtattgtattttggctatgacctatgatgtcagagatgg
aagttttcacccatgatggggcccataatgtcacctaagtttctgccttt
ggatcatgtcagatttcaaattttgggggttgggggtaataaggccttgc
tgggtcaccaagatcctgggaccaagtatcataagagtgcatcttcttgg
tggatgttgttactaccctaataaatgtggaaatgctgggaaatgaacat
aacatttacctgggctgctgtagtcaagtgtgttctgggtctgtgataag
ctctccatgaaccagttatcttcatccttgctgttagtcctgtggtccct
cattctggagccaagaaaagcaggtcagagagggagaatgcttaggggat
gagtctgcagaaggcgatgatgggctccagagcagccagtagagacatct
gcctcttgtagagatggccaagcaagacagcaggaagctgtttgccgaga
gtgtgagtgagaggttccaaagtcactgtagccatgaaaaagtcatttgc
tgagcttcaaataactgacaaggcctcagagaacacccagaagagctccc
tgaagactcggctttgaggtggaagcagctgtgtgctatcaacaagaaac
cacatttcacaggaggatggatggcgggggtatctgcatcagcacccagt
cctgtgtgtgagcctcctctgcctgtgctaccaattccacttttgatata
atgttcagtgaaagaatatacaacttgaaaatgttcatcaaaatgactct
aggctagatttaatgtgcctggaagagcttgctctccccaggctacacat
ctgtatctacagcaatgataagtcctgactggctttagtcagtgttttgt
caccatagggaatagtgaaacatcagctcatgttggtttcacctcatatc
agctctgggacttgtgtgcagacagcacatcatggcaggagtattgtcat
ggagcaaactgttcttactaaatagccaggtagaatagcccttaagtcta
caaattcaaatcacccccatggcctagatcaagcctttaaacatgtaagc
ctttggaacctcatccgacctataaccccaaagttaaca
gaattctgtaattaccattacttcacatttgaagctttttcagacttttg
atcactaagataattaaatatttttcatgctttctcacagaaccattttt
attttctcttttgtttctcatgcctgcttactgattagagtccattcacc
acctcacacttcagaagtgtagggcctcagcattggatctgatgtgaata
tttctctatatttaaatttgtttttatttttatcaatgcaatttttgttt
gtttgtttttgttttgttttgttttgaaaacagggtttctctgtgtagcc
ctgcctatcctggagctgcctctgtagaccaggctgcccttgaactcaga
gatctacctgcctctgcctccccaagtgctggtaccagaggcatatgcca
ccactgcctggctcaatgaagtttttaaaacataattatatatataatta
ttgttaatctcatgaaatcaagtccacctatctttcctttgtgagccctc
ccaaggcttctcatcctggaaaaatctttcccttcgaggaaataaatatg
tgcctattttcctactatttacttctattagctctgcctgaattcataac
tttcaattgaataattttgtagcaaattttgtctacaaaattgttacaac
acatttgcagatgtccacgctagttttcagaaactactaaggcaaatcca
tacctgaggtgaggaatcttgaagcaccacaaagccactcgggctgaggg
gccggagctcctgatgcctttcagctcccaaagaaccagtataacgggaa
gccacaagtcttggggttaccaggacctgtaacttctcatggagcaataa
tctgagaaaacgaccttttctgtcccgggagggcgattgtccaattccat
gctgtatttgtatacagaaaaaatttgaagagcaccttgtgttcctttaa
gagaaaatctgatgagaagtctcagctggtgtttgttatggggtcacaaa
ctagaacagctttgacatgtttgagaagcaccttaagtttactgatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_59019160_59020355
seq2: B6Ng01-126H19.b_47_1235

seq1  GAATTCCATTTATGACTCACTTTCTTCACTAGCCTGGTGGTAATTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTATGACTCACTTTCTTCACTAGCCTGGTGGTAATTTGGTC  50

seq1  CAGTATTTTTGGTATTGTATTTTGGCTATGACCTATGATGTCAGAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTTTGGTATTGTATTTTGGCTATGACCTATGATGTCAGAGATGG  100

seq1  AAGTTTTCACCCATGATGGGGCCCATAATGTCACCTAAGTTTCTGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCACCCATGATGGGGCCCATAATGTCACCTAAGTTTCTGCCTTT  150

seq1  GGATCATGTCAGATTTCAAATTTTGGGGGTTGGGGGTAATAAGGCCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGTCAGATTTCAAATTTTGGGGGTTGGGGGTAATAAGGCCTTGC  200

seq1  TGGGTCACCAAGATCCTGGGACCAAGTATCATAAGAGTGCATCTTCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACCAAGATCCTGGGACCAAGTATCATAAGAGTGCATCTTCTTGG  250

seq1  TGGATGTTGTTACTACCCTAATAAATGTGGAAATGCTGGGAAATGAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTGTTACTACCCTAATAAATGTGGAAATGCTGGGAAATGAACAT  300

seq1  AACATTTACCTGGGCTGCTGTAGTCAAGTGTGTTCTGGGTCTGTGATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTACCTGGGCTGCTGTAGTCAAGTGTGTTCTGGGTCTGTGATAAG  350

seq1  CTCTCCATGAACCAGTTATCTTCATCCTTGCTGTTAGTCCTGTGGTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATGAACCAGTTATCTTCATCCTTGCTGTTAGTCCTGTGGTCCCT  400

seq1  CATTCTGGAGCCAAGAAAAGCAGGTCAGAGAGGGAGAATGCTTAGGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGAGCCAAGAAAAGCAGGTCAGAGAGGGAGAATGCTTAGGGGAT  450

seq1  GAGTCTGCAGAAGGCGATGATGGGCTCCAGAGCAGCCAGTAGAGACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGCAGAAGGCGATGATGGGCTCCAGAGCAGCCAGTAGAGACATCT  500

seq1  GCCTCTTGTAGAGATGGCCAAGCAAGACAGCAGGAAGCTGTTTGCCGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTGTAGAGATGGCCAAGCAAGACAGCAGGAAGCTGTTTGCCGAGA  550

seq1  GTGTGAGTGAGAGGTTCCAAAGTCACTGTAGCCATGAAAAAGTCATTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTGAGAGGTTCCAAAGTCACTGTAGCCATGAAAAAGTCATTTGC  600

seq1  TGAGCTTCAAATAACTGACAAGGCCTCAGAGAACACCCAGAAGAGCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCAAATAACTGACAAGGCCTCAGAGAACACCCAGAAGAGCTCCC  650

seq1  TGAAGACTCGGCTTTGAGGTGGAAGCAGCTGTGTGCTATCAACAAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTCGGCTTTGAGGTGGAAGCAGCTGTGTGCTATCAACAAGAAAC  700

seq1  CACATTTCACAGGAGGATGGATGGC-GGGGTATCTGCATCAGCACCCAGT  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACATTTCACAGGAGGATGGATGGCGGGGGTATCTGCATCAGCACCCAGT  750

seq1  CCTGTGTGTGAGCCTCCTCTGCCTGTGCTACCAATTCCAC-TTTGATATA  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTGTGTGTGAGCCTCCTCTGCCTGTGCTACCAATTCCACTTTTGATATA  800

seq1  ATGTTCAGTGAAAGAATATACAACTTGAAAATGTTCATCAAAATGACTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGTGAAAGAATATACAACTTGAAAATGTTCATCAAAATGACTCT  850

seq1  AGGCTAGATTTAATGTGCCTGGAAGAGCTTGCTCTCCCCAGGCTACACAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGATTTAATGTGCCTGGAAGAGCTTGCTCTCCCCAGGCTACACAT  900

seq1  CTGTATCTTACAGCAATGATAAGTCCTGACTGGCTTTAGTCAGTGTTTTG  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATC-TACAGCAATGATAAGTCCTGACTGGCTTTAGTCAGTGTTTTG  949

seq1  TCACCATAGGGAATAGTGAAACAATCAGCTCATGTTGGGTTTCACCTCAT  998
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  TCACCATAGGGAATAGTGAAAC-ATCAGCTCATGTT-GGTTTCACCTCAT  997

seq1  ATTCAGCTCTGGGACCTGTGTGCAGACAGCACATCATGGCAGGAGTA-TG  1047
      | ||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  A-TCAGCTCTGGGACTTGTGTGCAGACAGCACATCATGGCAGGAGTATTG  1046

seq1  TCATGGAGCAAACTGT--CTACCACATAGCCAAGGTAGAATAGCCACTTA  1095
      ||||||||||||||||   ||| | |||||| ||||||||||||| ||||
seq2  TCATGGAGCAAACTGTTCTTACTAAATAGCC-AGGTAGAATAGCC-CTTA  1094

seq1  AGTTCTACAAACTTCAAATCACCCCATTGGCTAGGATCAAGCCTTTAAAC  1145
      || |||||||| |||||||||||||  ||||   ||||||||||||||||
seq2  AG-TCTACAAA-TTCAAATCACCCCCATGGCCTAGATCAAGCCTTTAAAC  1142

seq1  ATGTAGGCCTTTGGGGGACACTCATCCGACCTATAACACCCAAAGTGAAC  1195
      ||||| ||||||   |||  ||||||||||||||||| |||||||| |||
seq2  ATGTAAGCCTTT---GGAACCTCATCCGACCTATAAC-CCCAAAGTTAAC  1188

seq1  A  1196
      |
seq2  A  1189

seq1: chr14_59091915_59092972
seq2: B6Ng01-126H19.g_67_1115 (reverse)

seq1  TTGATCAGTTAAACTTTTAAGGGTGCTTTCTTCAAACCATGTCAAAAGCT  50
      |||||||| |||||||   | |||||||   ||||| |||||| ||||||
seq2  TTGATCAG-TAAACTT---AAGGTGCTT--CTCAAA-CATGTC-AAAGCT  42

seq1  GTTTCTAGTTTTGTGACCCCATAACAAACACCCAGCTGAGACTTCTCATC  100
      | |||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  G-TTCTAG-TTTGTGACCCCATAACAAACA-CCAGCTGAGACTTCTCATC  89

seq1  AGATTTTCTCTTAAAGGGACACAGGTGGCTCTTCAAATTTTTTTCTGTAT  150
      ||||||||||||||||| ||||| |  |||||||||| ||||||||||||
seq2  AGATTTTCTCTTAAAGGAACACAAGGTGCTCTTCAAA-TTTTTTCTGTAT  138

seq1  ACAAATTACAGCATGGAATTGGACAATCGCCCTCCCGGGACAG-AAAGGT  199
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAAA-TACAGCATGGAATTGGACAATCGCCCTCCCGGGACAGAAAAGGT  187

seq1  CGTTTTCTCAGATTATTGCTCCATGAGAAGTTACAGGTCCTGGTA--CCC  247
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  CGTTTTCTCAGATTATTGCTCCATGAGAAGTTACAGGTCCTGGTAACCCC  237

seq1  CAGAC-TGTGGCTTCCCGTTATACTGGTTCTTTGGGAGCTGAAAGGCATC  296
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGTGGCTTCCCGTTATACTGGTTCTTTGGGAGCTGAAAGGCATC  287

seq1  AGGAGCTCCGGCCCCTCAGCCCGAGTGGCTTTGTGGTGCTTCAAGATTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCCGGCCCCTCAGCCCGAGTGGCTTTGTGGTGCTTCAAGATTCC  337

seq1  TCACCTCAGGTATGGATTTGCCTTAGTAGTTTCTGAAAACTAGCGTGGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCAGGTATGGATTTGCCTTAGTAGTTTCTGAAAACTAGCGTGGAC  387

seq1  ATCTGCAAATGTGTTGTAACAATTTTGTAGACAAAATTTGCTACAAAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAATGTGTTGTAACAATTTTGTAGACAAAATTTGCTACAAAATT  437

seq1  ATTCAATTGAAAGTTATGAATTCAGGCAGAGCTAATAGAAGTAAATAGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTGAAAGTTATGAATTCAGGCAGAGCTAATAGAAGTAAATAGTA  487

seq1  GGAAAATAGGCACATATTTATTTCCTCGAAGGGAAAGATTTTTCCAGGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAGGCACATATTTATTTCCTCGAAGGGAAAGATTTTTCCAGGAT  537

seq1  GAGAAGCCTTGGGAGGGCTCACAAAGGAAAGATAGGTGGACTTGATTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCTTGGGAGGGCTCACAAAGGAAAGATAGGTGGACTTGATTTCA  587

seq1  TGAGATTAACAATAATTATATATATAATTATGTTTTAAAAACTTCATTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAACAATAATTATATATATAATTATGTTTTAAAAACTTCATTGA  637

seq1  GCCAGGCAGTGGTGGCATATGCCTCTGGTACCAGCACTTGGGGAGGCAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAGTGGTGGCATATGCCTCTGGTACCAGCACTTGGGGAGGCAGA  687

seq1  GGCAGGTAGATCTCTGAGTTCAAGGGCAGCCTGGTCTACAGAGGCAGCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTAGATCTCTGAGTTCAAGGGCAGCCTGGTCTACAGAGGCAGCTC  737

seq1  CAGGATAGGCAGGGCTACACAGAGAAACCCTGTTTTCAAAACAAAACAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGGCAGGGCTACACAGAGAAACCCTGTTTTCAAAACAAAACAAA  787

seq1  ACAAAAACAAACAAACAAAAATTGCATTGATAAAAATAAAAACAAATTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAAACAAACAAAAATTGCATTGATAAAAATAAAAACAAATTTA  837

seq1  AATATAGAGAAATATTCACATCAGATCCAATGCTGAGGCCCTACACTTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAGAAATATTCACATCAGATCCAATGCTGAGGCCCTACACTTCT  887

seq1  GAAGTGTGAGGTGGTGAATGGACTCTAATCAGTAAGCAGGCATGAGAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGAGGTGGTGAATGGACTCTAATCAGTAAGCAGGCATGAGAAAC  937

seq1  AAAAGAGAAAATAAAAATGGTTCTGTGAGAAAGCATGAAAAATATTTAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAAATAAAAATGGTTCTGTGAGAAAGCATGAAAAATATTTAAT  987

seq1  TATCTTAGTGATCAAAAGTCTGAAAAAGCTTCAAATGTGAAGTAATGGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGTGATCAAAAGTCTGAAAAAGCTTCAAATGTGAAGTAATGGTA  1037

seq1  ATTACAGAATTC  1058
      ||||||||||||
seq2  ATTACAGAATTC  1049