BAC Information

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BAC

Clone NameB6Ng01-128J09
Chromosome14 (Build37)13 (Build37)
Map Location 66,218,169 - 66,218,84537,792,430 - 37,792,617
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3
Downstream geneGm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128J09.bB6Ng01-128J09.g
ACCDH930397DH930398
length681621
definitionDH930397|Mus musculus domesticus DNA, BAC clone: B6Ng01-128J09, 5' end.DH930398|Mus musculus domesticus DNA, BAC clone: B6Ng01-128J09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,218,169 - 66,218,845)(37,792,430 - 37,792,617)
sequence
gaattctgtatgggagactcgtctctcctctatgggctgactttagagag
tgagttacaggtttcttgtttcccaccttgttgaggcagggtgtgttgtt
tcttttgctgttttccaggtagcctgggagcttccagctgattctcctgt
ctccgcctcctgcctcagcaagcaagccagaatgagggacatcctcctgc
tcacccttgacatgtgtcccgagggtggggctgttgtcaggcttgtgcag
aaaagcactgttacctactgagcccttagcccaagaggagttagtactta
agaaaaaatgaatttccccttcctgcttgtcttaggcagggtttctattc
ctgcacaaacatcatgaccaagaagcaagttggggaggaaagggtttatt
cagtttacacttccacgctgctatgcatcaccaagggaagtcaggactgg
aactcaagcaggtcaggaagcaggagctgatgcagaggccatggagggat
gttctttactggctttgctcagcctgctctcatatagaaccaagactacc
agcccagagatggtcccacccacaaggggccctttcccccttgatcacta
attgagaaaatgcctttacagttggatatcatggaggcatttcctcaaat
gacattccttttctctgtgataactccggct
gaattcactctgtagaccaggctggccttgaactcagaaatccacctgtc
tctgcctcccaagtgctgggattaaaggcgtgcgccaccacgcccggcca
gatgtagaactctcaactcctctccagcaccatgtctgtctacaggctgc
catgtttccagctataatgataatggactaaccctctgaaactgtaggct
aaccccaattaaatgtttcccttataagagttgttgggatttttggggga
gctgtttgccacttctctgaagcacctttaatcccagcacttggaaggca
gagggaagtgcacctctaaattctaggccagcctggctgccttagtcagg
gtttctattcctgcacaaaacatcatgaccatgatgcaaattggggagga
aagggtttattcagcttacacttccacaaagctatgcaccgccaagggaa
gtcaggactggaactcaagcaggtcaggaagcaggagctgatgcagaggc
catggagggatgttactggcttgctcagactgctttttttgtttttgttt
tttttgtttcgagacagggtttctctgtgtagccctggatgtcctggaac
tcattttgtagaccaggctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66218169_66218845
seq2: B6Ng01-128J09.b_48_728

seq1  GAATTCTGTATGGGAGACTCGTCTCTCCTCTATGGGCTGACTTTAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATGGGAGACTCGTCTCTCCTCTATGGGCTGACTTTAGAGAG  50

seq1  TGAGTTACAGGTTTCTTGTTTCCCACCTTGTTGAGGCAGGGTGTGTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACAGGTTTCTTGTTTCCCACCTTGTTGAGGCAGGGTGTGTTGTT  100

seq1  TCTTTTGCTGTTTTCCAGGTAGCCTGGGAGCTTCCAGCTGATTCTCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCTGTTTTCCAGGTAGCCTGGGAGCTTCCAGCTGATTCTCCTGT  150

seq1  CTCCGCCTCCTGCCTCAGCAAGCAAGCCAGAATGAGGGACATCCTCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCCTCCTGCCTCAGCAAGCAAGCCAGAATGAGGGACATCCTCCTGC  200

seq1  TCACCCTTGACATGTGTCCCGAGGGTGGGGCTGTTGTCAGGCTTGTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTGACATGTGTCCCGAGGGTGGGGCTGTTGTCAGGCTTGTGCAG  250

seq1  AAAAGCACTGTTACCTACTGAGCCCTTAGCCCAAGAGGAGTTAGTACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACTGTTACCTACTGAGCCCTTAGCCCAAGAGGAGTTAGTACTTA  300

seq1  AGAAAAAATGAATTTCCCCTTCCTGCTTGTCTTAGGCAGGGTTTCTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATGAATTTCCCCTTCCTGCTTGTCTTAGGCAGGGTTTCTATTC  350

seq1  CTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATT  400

seq1  CAGTTTACACTTCCACGCTGCTATGCATCACCAAGGGAAGTCAGGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTACACTTCCACGCTGCTATGCATCACCAAGGGAAGTCAGGACTGG  450

seq1  AACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGAT  500

seq1  GTTCTTTACTGGC-TTGCTCAGCCTGCTCTCATATAGAACCAAGACTACC  549
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTACTGGCTTTGCTCAGCCTGCTCTCATATAGAACCAAGACTACC  550

seq1  AGCCCAGAGATGGTCCCACCCACAAGGGGCCC-TTCCCCCTTGATCACTA  598
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCCCAGAGATGGTCCCACCCACAAGGGGCCCTTTCCCCCTTGATCACTA  600

seq1  ATTGAGAAAATGCC-TTACAGTTGGATATCATGGAGGCATTTCCTCAAAT  647
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAAATGCCTTTACAGTTGGATATCATGGAGGCATTTCCTCAAAT  650

seq1  GACATTCC-TTTCTCTGTGATAACTCCGGCT  677
      |||||||| ||||||||||||||||||||||
seq2  GACATTCCTTTTCTCTGTGATAACTCCGGCT  681

seq1: chr13_37792430_37792617
seq2: B6Ng01-128J09.g_408_592 (reverse)

seq1  AGCAAGCCAGTAATGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCT  50
      |||||||||||    |||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCAGT----AACATCCCTCCATGGCCTCTGCATCAGCTCCTGCT  46

seq1  TCCTGACCTGCTTGAGTTCCTGTCCTGACTTCCTTTGGTGATGAACAGCA  100
      |||||||||||||||||||| |||||||||||| |||| | || | ||| 
seq2  TCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCCTTGGCGGTGCATAGCT  96

seq1  ATGTGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACCTGCCTTTTG  150
       ||||||||||||||||||||||||||||||||||||||  ||| |  ||
seq2  TTGTGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAATTTGCATCATG  146

seq1  GTCATGATG-TTTGTGCAGGAATAGAAACCCTGACTAAG  188
      ||||||||| |||||||||||||||||||||||||||||
seq2  GTCATGATGTTTTGTGCAGGAATAGAAACCCTGACTAAG  185