BAC Information

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BAC

Clone NameB6Ng01-129A19
Chromosome14 (Build37)
Map Location 55,137,364 - 55,282,135
singlet/doubletdoublet
Overlap geneD14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1
Upstream geneEG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5
Downstream geneLOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129A19.bB6Ng01-129A19.g
ACCDH930738DH930739
length1,071836
definitionDH930738|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A19, 5' end.DH930739|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,281,048 - 55,282,135)(55,137,364 - 55,138,191)
sequence
gaattccaagctggatgtggtggcatatacctttaatcccagcactgaga
agcaggcagatttctgagattcaaggacagtctggtctacaatagtgagt
tccaggacagccagggctgtataatagagagactctgtttcttgtggctt
tatttagtttggtttggttgttttgagaaagggtttctctttgtagctct
ggctatcctggaactgaagaccaggctgaccgcaaactcagagatctgtc
tgctctgcctccctagtgctgggatttaaggcatgtaccaccttactccc
caaattcaagagccaggcacaatagcacaggcttatatcttagtattaag
gaggattactttgtgttcagggccagtctggcctacatagcaagaccctg
tctcaaaaaaggttatgggagctggtagtgatggctcacaccttcagtct
tatcacttgggaggcagaggcaggcaggtctctgagttcaaggccagctt
gatctacagagtgattttctggatggccaagagccactgagagaatcctt
atcttgagaaaaacaaaaacaaaaccagggtcttgttcatcccttgcccg
tcctcacggcgtagcctccagagtgctgagattataggcctcagcctagc
gagtctcaagtagctacctttagccaggcattatggcttacagcttcaat
cccagcatgtaggaggcagaagtatttgggtgagtatcagtaagttgcaa
ggctatcctgatctgcatagtgagttccaagccagccagaagtacaaaat
gagaacctgaaaggaaaaaaaaaaacagaactaatttatataggaacaat
cttagccacattccattccacattctaaaatacaaagacagccttatgtg
aaactgctactatgtatgtcgtgtactgtctttactagcttcaagttaaa
gaaattaatcaacagggttaaatcctttgttttgtttggtttgctctcta
ttacagggagcccaagagtgtgagctgagagcagagtcaccagctgcaca
cagcctcaacctcagagactc
gaattcagggactagctggcaaggagccaggagggaaaaaaaaaaaatag
taataggggtgacatccatcattttgtccttgcagtgggaaccagcaggg
agagtcggatctggggactggatatgctgaactggtcgtctagagagtgc
tgtgtaatagagggttgtatgatccaaatgacgtgaaccagacaatattt
ggacgtttctagaagagaagtcttaactagtaagatcaggggttctggag
gacagtgtctcagcaatacaggaaggatgtgggtaggatgcgctcttagg
agccctgtgtcatgtgaaagtcaggaaaccagagaaataagaaaacatac
tatgagggtgttgaggatgcttttgtaccaccaccaccaccaccaccacc
tcctcctcttcctcctcctccaccaccaccaccacctcctcctcttcctc
ctccaccacctccttccttctgctgccccaggaccttatgcagtatacat
attacatttagtcgcaggtatccttaggctcctttggattaatactattt
ctcagatgtttttcgttttttatgatttgataattttgatgagtgtttgt
cgggcatatttgtaagatgcccttctatttagaacttgtctcgtgattag
actaggaaggacaataagagatgtcctgcccatttttctctctctctccc
tccttccctccctctgtccttttcctcttttattccttctcttcctcttc
tccccctccctctgttttcctctctcactccctctctcccttcctcctcc
tcccttttctctctctctctctctgtctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55281048_55282135
seq2: B6Ng01-129A19.b_49_1119 (reverse)

seq1  GAGTCTCTGAGGTTTGAGGCTGTGTGGCAGCTGGTGGCTCTGCCTCTTCA  50
      |||||||||||| |||||||||||| |||||||||| ||||| ||| |||
seq2  GAGTCTCTGAGG-TTGAGGCTGTGT-GCAGCTGGTGACTCTG-CTC-TCA  46

seq1  GCTTCACACTTCTTTGGGCTCCCCTGTTAATAGAGAGCAAAAACCAAACA  100
      || |||||||   ||||||| ||||| |||||||||||  ||||||||||
seq2  GC-TCACACT--CTTGGGCT-CCCTG-TAATAGAGAGC--AAACCAAACA  89

seq1  AAACAAAGGATTTAACCCTGTTTGATTAATTTTCTTTAACTTGAAGCTAG  150
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  AAACAAAGGATTTAACCCTG-TTGATTAA-TTTCTTTAACTTGAAGCTAG  137

seq1  TAAAAGACAGTACACGACATACATAGTAGCAGTTTCACATAAGGCTGTCT  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAGACAGTACACGACATACATAGTAGCAGTTTCACATAAGGCTGTCT  186

seq1  TTGTTATTTTAGAATGTGGAATGGAATGTGGCTTAAGATTGTTCCTATAT  250
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTG-TATTTTAGAATGTGGAATGGAATGTGGC-TAAGATTGTTCCTATAT  234

seq1  AAATTAGTTCTGTTTTTTTTTTTTCCTTTCAGGTTCTCATTTTGTACTTC  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTTCTG-TTTTTTTTTTTCCTTTCAGGTTCTCATTTTGTACTTC  283

seq1  TGGCTGGCTTGGAACTCACTATGCAGATCAGGATAGCCTTGCAACTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCTTGGAACTCACTATGCAGATCAGGATAGCCTTGCAACTTACT  333

seq1  GATACTCACCCAAATACTTCTGCCTCCTACATGCTGGGATTGAAGCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCACCCAAATACTTCTGCCTCCTACATGCTGGGATTGAAGCTGTA  383

seq1  AGCCATAATGCCTGGCTAAAGGTAGCTACTTGAGACTCGCTAGGCTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAATGCCTGGCTAAAGGTAGCTACTTGAGACTCGCTAGGCTGAGG  433

seq1  CCTATAATCTCAGCACTCTGGAGGCTACGCCGTGAGGACGGGCAAGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAATCTCAGCACTCTGGAGGCTACGCCGTGAGGACGGGCAAGGGAT  483

seq1  GAACAAGACCCTGGTTTTGTTTTTGTTTTTCTCAAGATAAGGATTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGACCCTGGTTTTGTTTTTGTTTTTCTCAAGATAAGGATTCTCTC  533

seq1  AGTGGCTCTTGGCCATCCAGAAAATCACTCTGTAGATCAAGCTGGCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTCTTGGCCATCCAGAAAATCACTCTGTAGATCAAGCTGGCCTTG  583

seq1  AACTCAGAGACCTGCCTGCCTCTGCCTCCCAAGTGATAAGACTGAAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGACCTGCCTGCCTCTGCCTCCCAAGTGATAAGACTGAAGGTG  633

seq1  TGAGCCATCACTACCAGCTCCCATAACCTTTTTTGAGACAGGGTCTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCACTACCAGCTCCCATAACCTTTTTTGAGACAGGGTCTTGCT  683

seq1  ATGTAGGCCAGACTGGCCCTGAACACAAAGTAATCCTCCTTAATACTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGCCAGACTGGCCCTGAACACAAAGTAATCCTCCTTAATACTAAG  733

seq1  ATATAAGCCTGTGCTATTGTGCCTGGCTCTTGAATTTGGGGAGTAAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGCCTGTGCTATTGTGCCTGGCTCTTGAATTTGGGGAGTAAGGTG  783

seq1  GTACATGCCTTAAATCCCAGCACTAGGGAGGCAGAGCAGACAGATCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGCCTTAAATCCCAGCACTAGGGAGGCAGAGCAGACAGATCTCTG  833

seq1  AGTTTGCGGTCAGCCTGGTCTTCAGTTCCAGGATAGCCAGAGCTACAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCGGTCAGCCTGGTCTTCAGTTCCAGGATAGCCAGAGCTACAAAG  883

seq1  AGAAACCCTTTCTCAAAACAACCAAACCAAACTAAATAAAGCCACAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTTTCTCAAAACAACCAAACCAAACTAAATAAAGCCACAAGAA  933

seq1  ACAGAGTCTCTCTATTATACAGCCCTGGCTGTCCTGGAACTCACTATTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCTCTCTATTATACAGCCCTGGCTGTCCTGGAACTCACTATTGT  983

seq1  AGACCAGACTGTCCTTGAATCTCAGAAATCTGCCTGCTTCTCAGTGCTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGACTGTCCTTGAATCTCAGAAATCTGCCTGCTTCTCAGTGCTGG  1033

seq1  GATTAAAGGTATATGCCACCACATCCAGCTTGGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTATATGCCACCACATCCAGCTTGGAATTC  1071

seq1: chr14_55137364_55138191
seq2: B6Ng01-129A19.g_68_903

seq1  GAATTCAGGGACTAGCTGGCAAGGAGCCAGGAGGGAAAAAAAAAAAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGACTAGCTGGCAAGGAGCCAGGAGGGAAAAAAAAAAAATAG  50

seq1  TAATAGGGGTGACATCCATCATTTTGTCCTTGCAGTGGGAACCAGCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGGGTGACATCCATCATTTTGTCCTTGCAGTGGGAACCAGCAGGG  100

seq1  AGAGTCGGATCTGGGGACTGGATATGCTGAACTGGTCGTCTAGAGAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCGGATCTGGGGACTGGATATGCTGAACTGGTCGTCTAGAGAGTGC  150

seq1  TGTGTAATAGAGGGTTGTATGATCCAAATGACGTGAACCAGACAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATAGAGGGTTGTATGATCCAAATGACGTGAACCAGACAATATTT  200

seq1  GGACGTTTCTAGAAGAGAAGTCTTAACTAGTAAGATCAGGGGTTCTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTTTCTAGAAGAGAAGTCTTAACTAGTAAGATCAGGGGTTCTGGAG  250

seq1  GACAGTGTCTCAGCAATACAGGAAGGATGTGGGTAGGATGCGCTCTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTCTCAGCAATACAGGAAGGATGTGGGTAGGATGCGCTCTTAGG  300

seq1  AGCCCTGTGTCATGTGAAAGTCAGGAAACCAGAGAAATAAGAAAACATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTGTCATGTGAAAGTCAGGAAACCAGAGAAATAAGAAAACATAC  350

seq1  TATGAGGGTGTTGAGGATGCTTTTGTACCACCACCACCACCACCACCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGTGTTGAGGATGCTTTTGTACCACCACCACCACCACCACCACC  400

seq1  TCCTCCTCTTCCTCCTCCTCCACCACCACCACCACCTCCTCCTCTTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTTCCTCCTCCTCCACCACCACCACCACCTCCTCCTCTTCCTC  450

seq1  CTCCACCACCTCCTTCCTTCTGCTGCCCCAGGACCTTATGCAGTATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCACCTCCTTCCTTCTGCTGCCCCAGGACCTTATGCAGTATACAT  500

seq1  ATTACATTTAGTCGCAGGTATCCTTAGGCTCCTTTGGATTAATACTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTAGTCGCAGGTATCCTTAGGCTCCTTTGGATTAATACTATTT  550

seq1  CTCAGATGTTTTTCGTTTTTTATGA-TTGATAATTTTGATGAGTGTTTGT  599
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCAGATGTTTTTCGTTTTTTATGATTTGATAATTTTGATGAGTGTTTGT  600

seq1  CGGGCATA-TTGTAAGATGCCCTTCTA-TTAGAACTTGTCTCGTGATTAG  647
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  CGGGCATATTTGTAAGATGCCCTTCTATTTAGAACTTGTCTCGTGATTAG  650

seq1  ACTAGGAAGGACAATAAGAGATGTCCTGCC--ATTTTCTCTCTCTCTCCC  695
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  ACTAGGAAGGACAATAAGAGATGTCCTGCCCATTTTTCTCTCTCTCTCCC  700

seq1  TCCTTCCCTCCCTCTGTCC-TTTCCTCTTTTA-TCCTTCTCTTCCTC-TC  742
      ||||||||||||||||||| |||||||||||| |||||||||||||| ||
seq2  TCCTTCCCTCCCTCTGTCCTTTTCCTCTTTTATTCCTTCTCTTCCTCTTC  750

seq1  TCCCCCTCCCTCTGTTTTCCTCTCTCACTCCCTCTCTCCCTTCCTCCTCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCCTCTGTTTTCCTCTCTCACTCCCTCTCTCCCTTCCTCCTCC  800

seq1  TCCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  828
      |||||||||||||||||||||||| |||||||||||
seq2  TCCCTTTTCTCTCTCTCTCTCTCTGTCTCTCTCTCT  836