BAC Information

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BAC

Clone NameB6Ng01-129C17
Chromosome14 (Build37)6 (Build37)
Map Location 77,625,190 - 77,626,27729,084,290 - 29,084,415
singlet/doubletsingletsinglet
Overlap geneD230005D02Rik
Upstream geneLOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122
Downstream geneLOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129C17.bB6Ng01-129C17.g
ACCDH930825DH930826
length1,083139
definitionDH930825|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C17, 5' end.DH930826|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,625,190 - 77,626,277)(29,084,290 - 29,084,415)
sequence
gaattcttgcttattcatctgagatgtcttgatgccaggcctcaaagtac
caaagccagccttggctgtctcagctcggaggttgtttttctcacgggct
ctgtataagtgtacggctggaagctgtgcacttcgcctaacattggaact
agaaggagagcctctcagcctctgtgactcatgttctttccgtagcagga
ctgtcaggagacgtgttgtttggaacaaatacatctttcatgaagtgtgc
agaaggctagacatgcgctgctcacagttttcagcctgttgcagatcgag
atgtgaagagtgaacagtgtagaccgcagcattctatctttgatcatggt
gttaagattttttttttttttgctctgacttttccctcaataaaatagga
gcagaaaacaactattcatacctaccatgttttatttttgttacatctta
gcatttggggattttaaaagacgcctttttgagagctgtgcacagtttgc
acacttctgtaatcgcagaattctctaagcggagtcaagagggttgcaaa
tgtgtgctaaacagtgagttcaagactggtcagggctacaaatactctga
ctattcagacctcctttcccccaaaatgatccctttaaataatttgactt
aaattgtgtgaatttgaggtcacactatttcccattcaccgactttcatg
tctttaaattgttgggatttttttgatattttttctaatttcacaaagaa
ctatagtctttggaaatctatgtttccatttttgtgtaatcagtgtcatt
aataaaagtttttaaatctaggttaactgctactttttgatggtatttat
gtagaaagcatcattcacaatggttgtgcaaagaacctcagactaacaag
caaaaccttctttgtggacggcacatcattgttagatatacagttaactg
aaaacgttaatgtaaaccagtaggtctagagagcctggtggcttctccat
tctattctgtctggagctctctgtggctcagttactctgccaatggaagt
gctatttgggaattcctcttcctcctctccttc
ttaattatgcttttactgctgtgaacagacaccatgaccaaggtaattct
tgcagaggacaacatttaattggggatggcttacaggttcagtcctgtat
tatcaaggtgggagcatggcagcatccaggcaggcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_77625190_77626277
seq2: B6Ng01-129C17.b_48_1130

seq1  GAATTCTTGCTTATTCATCTGAGATGTC-GGATGCCAGGCCTCAAAGTAC  49
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GAATTCTTGCTTATTCATCTGAGATGTCTTGATGCCAGGCCTCAAAGTAC  50

seq1  CAAAGCCAGCCTTGGCTGTCTCAGCTCGGAGGTTGTTTTTCTCACGGGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAGCCTTGGCTGTCTCAGCTCGGAGGTTGTTTTTCTCACGGGCT  100

seq1  CTGTATAAGTGTACGGCTGGAAGCTGTGCACTTCGCCTAACATTGGAACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAAGTGTACGGCTGGAAGCTGTGCACTTCGCCTAACATTGGAACT  150

seq1  AGAAGGAGAGCCTCTCAGCCTCTGTGACTCATGTTCTTTCCGTAGCAGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAGCCTCTCAGCCTCTGTGACTCATGTTCTTTCCGTAGCAGGA  200

seq1  CTGTCAGGAGACGTGTTGTTTGGAACAAATACATCTTTCATGAAGTGTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGAGACGTGTTGTTTGGAACAAATACATCTTTCATGAAGTGTGC  250

seq1  AGAAGGCTAGACATGCGCTGCTCACAGTTTTCAGCCTGTTGCAGATCGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTAGACATGCGCTGCTCACAGTTTTCAGCCTGTTGCAGATCGAG  300

seq1  ATGTGAAGAGTGAACAGTGTAGACCGCAGCATTCTATCTTTGATCATGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGAGTGAACAGTGTAGACCGCAGCATTCTATCTTTGATCATGGT  350

seq1  GTTAAGATTTTTTTTTTTTTTGCTCTGACTTTTCCCTCAATAAAATAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATTTTTTTTTTTTTTGCTCTGACTTTTCCCTCAATAAAATAGGA  400

seq1  GCAGAAAACAACTATTCATACCTACCATGTTTTATTTTTGTTACATCTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAACAACTATTCATACCTACCATGTTTTATTTTTGTTACATCTTA  450

seq1  GCATTTGGGGATTTTAAAAGACGCCTTTTTGAGAGCTGTGCACAGTTTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGGGATTTTAAAAGACGCCTTTTTGAGAGCTGTGCACAGTTTGC  500

seq1  ACACTTCTGTAATCGCAGAATTCTCTAAGCGGAGTCAAGAGGGTTGCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTGTAATCGCAGAATTCTCTAAGCGGAGTCAAGAGGGTTGCAAA  550

seq1  TGTGTGCTAAACAGTGAGTTCAAGACTGGTCAGGGCTACAAATACTCTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTAAACAGTGAGTTCAAGACTGGTCAGGGCTACAAATACTCTGA  600

seq1  CTATTCAGACCTCCTTTCCCCCAAAATGATCCCTTTAAATAATTTGACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGACCTCCTTTCCCCCAAAATGATCCCTTTAAATAATTTGACTT  650

seq1  AAATTGTGTGAATTTGAGGTCACACTATTTCCCATTCACCGACTTTCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGTGAATTTGAGGTCACACTATTTCCCATTCACCGACTTTCATG  700

seq1  TCTTTAAATTGTTGGGATTTTTTTGATATTTTTTCTAATTTCACAAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAATTGTTGGGATTTTTTTGATATTTTTTCTAATTTCACAAAGAA  750

seq1  CTATAGTCTTTGGAAATCTATGTTTCCATTTTTGTGTAATCAGTGTCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTCTTTGGAAATCTATGTTTCCATTTTTGTGTAATCAGTGTCATT  800

seq1  AATAAAAGTTTTTAAATCTAGGTTAACTGCTACTTTTTGATGGTATTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTTTTTAAATCTAGGTTAACTGCTACTTTTTGATGGTATTTAT  850

seq1  GTAGAAAGCATCATTCACAATGGTTGTGCAAAAGAACCTCAGACTAACAA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTAGAAAGCATCATTCACAATGGTTGTGC-AAAGAACCTCAGACTAACAA  899

seq1  GCAAAACCTTCTTTGT-GACGGCACATCATTGTTAGATATACAGTTAACT  948
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCAAAACCTTCTTTGTGGACGGCACATCATTGTTAGATATACAGTTAACT  949

seq1  GAAAACGTTAATGTAAACCAGTAAGGTCTAGGAGAGCCTGGTGGCTTCTC  998
      |||||||||||||||||||||| ||||||| |||||||||||||||||| 
seq2  GAAAACGTTAATGTAAACCAGT-AGGTCTA-GAGAGCCTGGTGGCTTCT-  996

seq1  CCATTCTATTCTGTCCTGAGCTTCTCTTGTGCTCCAGTTACTCTGCCAAT  1048
      |||||||||||||||  |||| |||| ||||   ||||||||||||||||
seq2  CCATTCTATTCTGTCTGGAGC-TCTC-TGTGGCTCAGTTACTCTGCCAAT  1044

seq1  GG-AGTGCTATTTGGAAATTTCCTCTTTCCCTCC-CTCCTTC  1088
      || |||||||||||| || ||||||||  ||||| |||||||
seq2  GGAAGTGCTATTTGGGAA-TTCCTCTT--CCTCCTCTCCTTC  1083

seq1: chr6_29084290_29084415
seq2: B6Ng01-129C17.g_92_214 (reverse)

seq1  CCATGCCTGCCTGGATGCTGCCATGTTCCCTCCTTGATGATAATGGACTG  50
      ||||||||||||||||||||||||| |||| ||||||| |||  |||   
seq2  CCATGCCTGCCTGGATGCTGCCATGCTCCCACCTTGATAATACAGGA---  47

seq1  AACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTCCTTTATAAGA  100
           |||||||||||||||| |||||||||||||||||||| |  ||||
seq2  -----CTGAACCTGTAAGCCATCCCCAATTAAATGTTGTCCTCTGCAAGA  92

seq1  -----CTTGGTCATGGTGTCTGTTCACAGCA  126
           ||||||||||||||||||||||||||
seq2  ATTACCTTGGTCATGGTGTCTGTTCACAGCA  123