BAC Information

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BAC

Clone NameB6Ng01-132C01
Chromosome14 (Build37)
Map Location 77,890,189 - 78,011,079
singlet/doubletdoublet
Overlap geneD230005D02Rik, EG629678
Upstream geneTsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, LOC100043755, LOC676171
Downstream geneGm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132C01.bB6Ng01-132C01.g
ACCDH933011DH933012
length1,1981,100
definitionDH933011|Mus musculus domesticus DNA, BAC clone: B6Ng01-132C01, 5' end.DH933012|Mus musculus domesticus DNA, BAC clone: B6Ng01-132C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,009,872 - 78,011,079)(77,890,189 - 77,891,277)
sequence
gaattcaaacaagacaagtaatttatgttgtgatcactctagggaagcaa
agcaaagacactaggagtctatggatgatgttgcaatagacacaacatca
tcaatatccatccagtttgtgcctttttaaaaaaattttttctgtactta
cattttagcaaggttggggatgtctcccttcaagactgtctccataactt
taggttaaaacagattctatagatgactggggaaagagtcatggctatct
ccctccaagaaccatttaggcttttgtttgtacatttaatatggtagatt
atagacctagatctatagctctgtagaccctgacgatgtcatacaaatag
aggtatataaagctctacctggctagaggcttcaaaataaaatcagggta
gagtgactgaagcccaagaacccaatctgtattgattttcttttgctgcc
atcttcagggcttaaaacaaccggttcaagatattactgtgtccaaggtc
taacctggggccatgagtacttgtgttatagcttccttaggctcaggagg
cattttgcccccctccctgttcttttcttctttaaggactgaaacaagtc
ttgctgcccattggctggtaacaggagtcttccttgtgaagacagaccaa
agtttgcccgagcaacagctctagcctgtggggtctgactttagtaccac
aggaggttgcttttactctttagtgagttcatccccaacattctgctgtt
ccacagtcattttcatgactccagcattccctcctggctctcacaccact
tgagagtttaattctgttaccctaacctcaccgatcaattccgtgagctc
cgggcacagtgcaatttggatggtaaatgttgagggactgtgaaaaatca
cagtagagaggaaggggtggggccttattggtggtaggtacaggccgacc
aactgtagactcagtcttgtgaacagctcttaacctggtagcataggatt
agccagtcacatgaccaaccggactttaaatagtgagttcaattcttatg
gctgctacccccacagttttcctaagtgattctcaaggctctctgttaca
aaaaaaaattctcctttcgagatctctctaatgtgtgaagaacctaataa
ttagaaattaatattattaagtctgctagcacggcccccaaagagagt
gaattcataggacaatgcctgtttctgtaagtcttgtttatggtttctgt
tgaaagggaaaataaattccaggactcacagctctcgctgccagtgtaat
gagattgcttgtgctagagacactgtattgagtacaagagagagagaatg
gattgaaagggaaaggtctgtgatggtctgactttacttcccagcccagg
agaatagtcccaggcaatcccagatgaccacagatttactccccatctct
ccatctcctcgtctctctatatacatagatgttatgcattttacacacca
acctatctacccagcctttctgaggtacccaggctctcttgaatgaaggt
gtatcatcagctctgctgtcagcggactgccctcacacaacacttgctgc
ttcgaacactccgtagacacattgccgaaactttacgatcatatttcttg
cttcacagtacaactctggctctagaaggcactagctcagccacaactgt
ttcaaaacaaacatgtactggacttttggccatcatcagccttgatgaac
tctagatgaccctaaagccctttccatactggacagagtggaagacttcc
ttaggtggcccaggagaagggccatggctggtaccagtacagacttttca
ctttccagaaagacagccatgattgacagaagcatccgtgctacatcccc
tagcttggccacatatgtaggctgttcagcctgcattttgagccagctaa
gagacaacttcttgttgttccccttgtagacctaataactggcaggccct
tactgacttttggactttttagtagcatgagctgagcttgtcatacaaaa
gatgcttagaagcagcccatagagtggccaacagtagcaaattatcagag
gccactccccaaagaaacatcggtgttagacagtaacaggagtggtaagc
agctagtggctgcaattgttcttgaatggtggctggggtcagaaaatgac
agaaaacaagagccttagcttgagaaagtagagtactagggttgctggga
ctgtttcaggaagcgggtggtcttaagggcaacggtctcaggccatccta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78009872_78011079
seq2: B6Ng01-132C01.b_46_1243 (reverse)

seq1  ACTCTTCTTTGGGGGCCGTGCTAGCATGACTTTATTTATTTATTTATTTA  50
      |||| ||||||||||||||||||||| ||||| ||     |||| |||  
seq2  ACTC-TCTTTGGGGGCCGTGCTAGCA-GACTTAAT---AATATTAATT--  43

seq1  TTTATTTATTTATGTTCTTCA-ACATTAGA-AGATCT-GAAA-GAGAATT  96
      | || ||| ||| |||||||| |||||||| |||||| |||| |||||||
seq2  TCTAATTA-TTAGGTTCTTCACACATTAGAGAGATCTCGAAAGGAGAATT  92

seq1  CTCTTTTGTAAC--AGAGCCCTGAGAATCACTTAGGAAAGAACTGTGGGG  144
       | |||||||||  |||||| |||||||||||||||||  ||||||||||
seq2  TTTTTTTGTAACAGAGAGCCTTGAGAATCACTTAGGAA--AACTGTGGGG  140

seq1  GTAGCAGCCATAAGAATTGAACTCACTATTTTAAAGTTCCGGTTTGGTCA  194
      |||||||||||||||||||||||||||| ||||||| ||||| |||||||
seq2  GTAGCAGCCATAAGAATTGAACTCACTA-TTTAAAG-TCCGG-TTGGTCA  187

seq1  TGTGACTGGCTAATCCTATGCTTACCAGGTTAAGAGCTGTTCACCAAGAC  244
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  TGTGACTGGCTAATCCTATGC-TACCAGGTTAAGAGCTGTTCA-CAAGAC  235

seq1  TGAGTCTACAGTTGGTCGGCCTGTACCTAACCACCAATAAGGCCCCACCC  294
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAGTCTACAGTTGGTCGGCCTGTACCT-ACCACCAATAAGGCCCCACCC  284

seq1  CTTCCTCTCTACTGTGATTTTTCACAGTCCCTCAACATTTACCATCCAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCTACTGTGATTTTTCACAGTCCCTCAACATTTACCATCCAAA  334

seq1  TTGCACTGTGCCCGGAGCTCACGGAATTGATCGGTGAGGTTAGGGTAACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGTGCCCGGAGCTCACGGAATTGATCGGTGAGGTTAGGGTAACA  384

seq1  GAATTAAACTCTCAAGTGGTGTGAGAGCCAGGAGGGAATGCTGGAGTCAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAACTCTCAAGTGGTGTGAGAGCCAGGAGGGAATGCTGGAGTCAT  434

seq1  GAAAATGACTGTGGAACAGCAGAATGTTGGGGATGAACTCACTAAAGAGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGACTGTGGAACAGCAGAATGTTGGGGATGAACTCACTAAAGAGT  484

seq1  AAAAGCAACCTCCTGTGGTACTAAAGTCAGACCCCACAGGCTAGAGCTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAACCTCCTGTGGTACTAAAGTCAGACCCCACAGGCTAGAGCTGT  534

seq1  TGCTCGGGCAAACTTTGGTCTGTCTTCACAAGGAAGACTCCTGTTACCAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGGGCAAACTTTGGTCTGTCTTCACAAGGAAGACTCCTGTTACCAG  584

seq1  CCAATGGGCAGCAAGACTTGTTTCAGTCCTTAAAGAAGAAAAGAACAGGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGCAGCAAGACTTGTTTCAGTCCTTAAAGAAGAAAAGAACAGGG  634

seq1  AGGGGGGCAAAATGCCTCCTGAGCCTAAGGAAGCTATAACACAAGTACTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGCAAAATGCCTCCTGAGCCTAAGGAAGCTATAACACAAGTACTC  684

seq1  ATGGCCCCAGGTTAGACCTTGGACACAGTAATATCTTGAACCGGTTGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCCAGGTTAGACCTTGGACACAGTAATATCTTGAACCGGTTGTTT  734

seq1  TAAGCCCTGAAGATGGCAGCAAAAGAAAATCAATACAGATTGGGTTCTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCTGAAGATGGCAGCAAAAGAAAATCAATACAGATTGGGTTCTTG  784

seq1  GGCTTCAGTCACTCTACCCTGATTTTATTTTGAAGCCTCTAGCCAGGTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGTCACTCTACCCTGATTTTATTTTGAAGCCTCTAGCCAGGTAG  834

seq1  AGCTTTATATACCTCTATTTGTATGACATCGTCAGGGTCTACAGAGCTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATATACCTCTATTTGTATGACATCGTCAGGGTCTACAGAGCTAT  884

seq1  AGATCTAGGTCTATAATCTACCATATTAAATGTACAAACAAAAGCCTAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAGGTCTATAATCTACCATATTAAATGTACAAACAAAAGCCTAAA  934

seq1  TGGTTCTTGGAGGGAGATAGCCATGACTCTTTCCCCAGTCATCTATAGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTGGAGGGAGATAGCCATGACTCTTTCCCCAGTCATCTATAGAA  984

seq1  TCTGTTTTAACCTAAAGTTATGGAGACAGTCTTGAAGGGAGACATCCCCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTAACCTAAAGTTATGGAGACAGTCTTGAAGGGAGACATCCCCA  1034

seq1  ACCTTGCTAAAATGTAAGTACAGAAAAAATTTTTTTAAAAAGGCACAAAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTAAAATGTAAGTACAGAAAAAATTTTTTTAAAAAGGCACAAAC  1084

seq1  TGGATGGATATTGATGATGTTGTGTCTATTGCAACATCATCCATAGACTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGATATTGATGATGTTGTGTCTATTGCAACATCATCCATAGACTC  1134

seq1  CTAGTGTCTTTGCTTTGCTTCCCTAGAGTGATCACAACATAAATTACTTG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTCTTTGCTTTGCTTCCCTAGAGTGATCACAACATAAATTACTTG  1184

seq1  TCTTGTTTGAATTC  1208
      ||||||||||||||
seq2  TCTTGTTTGAATTC  1198

seq1: chr14_77890189_77891277
seq2: B6Ng01-132C01.g_63_1162

seq1  GAATTCATAGGACAATGCCTGTTTCTGTAAGTCTTGTTTATGGTTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGACAATGCCTGTTTCTGTAAGTCTTGTTTATGGTTTCTGT  50

seq1  TGAAAGGGAAAATAAATTCCAGGACTCACAGCTCTCGCTGCCAGTGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGAAAATAAATTCCAGGACTCACAGCTCTCGCTGCCAGTGTAAT  100

seq1  GAGATTGCTTGTGCTAGAGACACTGTATTGAGTACAAGAGAGAGAGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGCTTGTGCTAGAGACACTGTATTGAGTACAAGAGAGAGAGAATG  150

seq1  GATTGAAAGGGAAAGGTCTGTGATGGTCTGACTTTACTTCCCAGCCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAGGGAAAGGTCTGTGATGGTCTGACTTTACTTCCCAGCCCAGG  200

seq1  AGAATAGTCCCAGGCAATCCCAGATGACCACAGATTTACTCCCCATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTCCCAGGCAATCCCAGATGACCACAGATTTACTCCCCATCTCT  250

seq1  CCATCTCCTCGTCTCTCTATATACATAGATGTTATGCATTTTACACACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCTCGTCTCTCTATATACATAGATGTTATGCATTTTACACACCA  300

seq1  ACCTATCTACCCAGCCTTTCTGAGGTACCCAGGCTCTCTTGAATGAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCTACCCAGCCTTTCTGAGGTACCCAGGCTCTCTTGAATGAAGGT  350

seq1  GTATCATCAGCTCTGCTGTCAGCGGACTGCCCTCACACAACACTTGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATCAGCTCTGCTGTCAGCGGACTGCCCTCACACAACACTTGCTGC  400

seq1  TTCGAACACTCCGTAGACACATTGCCGAAACTTTACGATCATATTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAACACTCCGTAGACACATTGCCGAAACTTTACGATCATATTTCTTG  450

seq1  CTTCACAGTACAACTCTGGCTCTAGAAGGCACTAGCTCAGCCACAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGTACAACTCTGGCTCTAGAAGGCACTAGCTCAGCCACAACTGT  500

seq1  TTCAAAACAAACATGTACTGGACTTTTGGCCATCATCAGCCTTGATGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACAAACATGTACTGGACTTTTGGCCATCATCAGCCTTGATGAAC  550

seq1  TCTAGATGACCCTAAAGCCCTTTCCATACTGGACAGAGTGGAAGACTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATGACCCTAAAGCCCTTTCCATACTGGACAGAGTGGAAGACTTCC  600

seq1  TTAGGTGGCCCAGGAGAAGGGCCATGGCTGGTACCAGTACAGAC-TTTCA  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAGGTGGCCCAGGAGAAGGGCCATGGCTGGTACCAGTACAGACTTTTCA  650

seq1  CTTTCCAGAAAGACAGCCATGATTGACAGAAGCATCCGTGCTACATCCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGAAAGACAGCCATGATTGACAGAAGCATCCGTGCTACATCCCC  700

seq1  TAGCTTGGCCACATATGTAGGCTGTTCAGCCTGCATTTTGAGCCAGCTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGGCCACATATGTAGGCTGTTCAGCCTGCATTTTGAGCCAGCTAA  750

seq1  GAGACAACTTCTTGTTGTT-CCCTTGTAGACCTAATAACTGGCAGG-CCT  797
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  GAGACAACTTCTTGTTGTTCCCCTTGTAGACCTAATAACTGGCAGGCCCT  800

seq1  TACTGACTTTTGGAC-TTTTAGTAGCATGAGCTGAGCTTGTCATACAAAA  846
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  TACTGACTTTTGGACTTTTTAGTAGCATGAGCTGAGCTTGTCATAC-AAA  849

seq1  AGATGC-TAGAAGCAG-CCATAGAGTGG-CAACAGTAGCAAAATTATCAG  893
      |||||| ||||||||| ||||||||||| |||||||||| ||||||||||
seq2  AGATGCTTAGAAGCAGCCCATAGAGTGGCCAACAGTAGC-AAATTATCAG  898

seq1  AGGCCACTCCCCAAAG-AACATCGGTG-TAGACAGTAACAGGAGTGGTAG  941
      |||||||||||||||| |||||||||| ||||||||||||||||||||| 
seq2  AGGCCACTCCCCAAAGAAACATCGGTGTTAGACAGTAACAGGAGTGGTAA  948

seq1  CAAGCTAGTGGCTGCAAATG-TCTTGAAT-GTGGCT-GGGTCAGAAAATG  988
        ||||||||||||||| || |||||||| |||||| |||||||||||||
seq2  GCAGCTAGTGGCTGCAATTGTTCTTGAATGGTGGCTGGGGTCAGAAAATG  998

seq1  ACAGAAAACAAAGAGCCTTAGC-TGAGAAAGTAGAG-ACTAGGGTTGCTG  1036
      ||||||||| |||||||||||| ||||||||||||| |||||||||||||
seq2  ACAGAAAAC-AAGAGCCTTAGCTTGAGAAAGTAGAGTACTAGGGTTGCTG  1047

seq1  GGACTGTTTCAGGAAGCTGTGGGTCTTAAGGGCCAACCGTCTCAGG-CAT  1085
      ||||||||||||||||| |  ||||||||||| |||| |||||||| |||
seq2  GGACTGTTTCAGGAAGCGGGTGGTCTTAAGGG-CAACGGTCTCAGGCCAT  1096

seq1  CCTA  1089
      ||||
seq2  CCTA  1100