BAC Information

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BAC

Clone NameB6Ng01-135I06
Chromosome14 (Build37)
Map Location 44,601,679 - 44,806,244
singlet/doubletdoublet
Overlap geneLOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647
Upstream geneLOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621
Downstream geneEG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I06.bB6Ng01-135I06.g
ACCDH935531DH935532
length1,0601,118
definitionDH935531|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I06, 5' end.DH935532|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,601,679 - 44,602,749)(44,805,122 - 44,806,244)
sequence
gaattcatttttaatttcccacagctttagagactttaaggtaaataccc
cctcctttgtttacacaaaggcccagctacattctctgaatttaaataac
taaagaagctggctccttcccctttccttcattttctttgtacagacgat
gcttttaagagtagttgatgtgagaatgtacctgatatttttttttctaa
cacactcaccaatttgcctggtgtgcttgctcttcagagcgcactctttt
gaatgagaaaagttttgccttgtccagaaacttcagttagagtggtggtc
tcttttattgtgacctcaaacttatttgcttttagcagggtagagggaag
agagagaagattttgagacttttctcagacagaagcagtaagccacaggg
caactaaggacggaattttctagaaaagtgagagtcatcctcaggggaca
gaaacaagaaaagttatgaggactctaaagctcaaagcagctctgggcac
agatggccaagactgaagttattggttaatagaaggatccatgttctcaa
aggagccaggcgagctctctgtgtgcttctgcattgagcccctcaggtgg
ctgcagcctcaagtgccttccattccatttgcaagaagcacttctgtgct
gccatggtgctaatggtgaagtgaaggaatgcaggagacagagggtgtgc
agtgactaggggttgcccactctcctccagatctagtttcccagatggaa
ccatcctgcaagtcttctgaaagagttgtgcttgaagaatttgccttcct
agggcttccttccttccttccttttttcctttcttccttccctttttcct
tccttccttttcttttttcttcgttgcttccttttttacttttttattcc
ccactcccagtatgtatgtgtgtgtaaatgtttctgtgaagtgtgagatc
attttcagcaccttaaaactccctgggggagcttgatgagtctgtggtga
gcaggggataatgcactgcatgcttgttggcagaggagaagccagggatg
gtctcagtgg
gaattcccaaagctgtggtgcaaaacatggcgtttcaggagccccttgag
ggtcataataatctaaagaactcacactattttatctgtgtatcattctg
caattgctgttattcaaaatcattttctcagtgttaaaatcagcctaaat
gggggttgggagaaatgaggaccttcacacaggtctggtagtataaaatc
aggtaggtgtttgagaagcaaggttcagaaagtagaaaagaagtcccctt
tgacccagagattccaaaaaaggagtagatatccacagagtctctagggc
acatgaggtctgtaatggtcctcagagtagtccggaagaagatgatattc
tgatatccatcagctaaagagtgaaaatgtactatgtgatgcagcccttt
catgaaatattgctcagtgtgagataatccatgcaagtattgacctttaa
ctatttagccacatattactcaaaatatccctgacacagttatattattt
gaagaacattgttccattggatcctatttataatgacttcctatttttct
gggatcatacctttggacaccaagtaggtcaggcaatgataaagggagcc
tctgatggaaggaactgtttactttgggacaagactgaaacagtgaagga
gaggctagtccaccaccaacacgtgatcctttgctggcagagaagcctac
tccacagagcctttggaacttgctaagacagattgaataatgtaccaaga
accctggttcatgaggggaaagcatatcactgactgagctgtctatatgc
tttgccccctatgtaccttatctcatttaagatttgttttttatgtctac
aaatattcctgagatttttatattagcatttactggggaatctaaacagt
ttgcttagtatacgtgctagtgttatgtgaatacaaataatttgtatatt
tgacagagtctctacaacagccttagatatacaggtgtgttgtatattct
tcatggtccatcactttaaaattcgatcctagccatggggaatattttta
ggtagcacattctttctgatttaggaccaatgcagggcccggtggattgc
atgtgaaggtgtttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44601679_44602749
seq2: B6Ng01-135I06.b_46_1105

seq1  GAATTCATTTTTAATTTCCCACAGCTTTAGAGACTTTAAGGTAAATACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTAATTTCCCACAGCTTTAGAGACTTTAAGGTAAATACCC  50

seq1  CCTCCTTTGTTTACACAAAGGCCCAGCTACATTCTCTGAATTTAAATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTGTTTACACAAAGGCCCAGCTACATTCTCTGAATTTAAATAAC  100

seq1  TAAAGAAGCTGGCTCCTTCCCCTTTCCTTCATTTTCTTTGTACAGACGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGCTGGCTCCTTCCCCTTTCCTTCATTTTCTTTGTACAGACGAT  150

seq1  GCTTTTAAGAGTAGTTGATGTGAGAATGTACCTGATATTTTTTTTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAGAGTAGTTGATGTGAGAATGTACCTGATATTTTTTTTTCTAA  200

seq1  CACACTCACCAATTTGCCTGGTGTGCTTGCTCTTCAGAGCGCACTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACCAATTTGCCTGGTGTGCTTGCTCTTCAGAGCGCACTCTTTT  250

seq1  GAATGAGAAAAGTTTTGCCTTGTCCAGAAACTTCAGTTAGAGTGGTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGAAAAGTTTTGCCTTGTCCAGAAACTTCAGTTAGAGTGGTGGTC  300

seq1  TCTTTTATTGTGACCTCAAACTTATTTGCTTTTAGCAGGGTAGAGGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTGTGACCTCAAACTTATTTGCTTTTAGCAGGGTAGAGGGAAG  350

seq1  AGAGAGAAGATTTTGAGACTTTTCTCAGACAGAAGCAGTAAGCCACAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGATTTTGAGACTTTTCTCAGACAGAAGCAGTAAGCCACAGGG  400

seq1  CAACTAAGGACGGAATTTTCTAGAAAAGTGAGAGTCATCCTCAGGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAGGACGGAATTTTCTAGAAAAGTGAGAGTCATCCTCAGGGGACA  450

seq1  GAAACAAGAAAAGTTATGAGGACTCTAAAGCTCAAAGCAGCTCTGGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGAAAAGTTATGAGGACTCTAAAGCTCAAAGCAGCTCTGGGCAC  500

seq1  AGATGGCCAAGACTGAAGTTATTGGTTAATAGAAGGATCCATGTTCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCAAGACTGAAGTTATTGGTTAATAGAAGGATCCATGTTCTCAA  550

seq1  AGGAGCCAGGCGAGCTCTCTGTGTGCTTCTGCATTGAGCCCCTCAGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGGCGAGCTCTCTGTGTGCTTCTGCATTGAGCCCCTCAGGTGG  600

seq1  CTGCAGCCTCAAGTGCCTTCCATTCCATTTGCAAGAAGCACTTCTGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCCTCAAGTGCCTTCCATTCCATTTGCAAGAAGCACTTCTGTGCT  650

seq1  GCCATGGTGCTAATGGTGAAGTGAAGGAATGCAGGAGACAGAGGGTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTGCTAATGGTGAAGTGAAGGAATGCAGGAGACAGAGGGTGTGC  700

seq1  AGTGACTAGGGGTTGCCCACTCTCCTCCAGATCTAGTTTCCCAGATGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTAGGGGTTGCCCACTCTCCTCCAGATCTAGTTTCCCAGATGGAA  750

seq1  CCATCCTGCAAAGTCTTCTGAAAGAGTTGTGCTTGAAGAATTTGCCTTCC  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGC-AAGTCTTCTGAAAGAGTTGTGCTTGAAGAATTTGCCTTCC  799

seq1  TAGGGCTTCCTTCCTTCCTTCCTTTTTTCCTTTCTTCCTTCCCTTTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTTCCTTCCTTCCTTCCTTTTTTCCTTTCTTCCTTCCCTTTTTCC  849

seq1  TTCCTTCCTTTTCTTTTTTTCTTCGTTGCTTCCTTTTTTACTTTTTTTAT  900
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  TTCCTTCCTTTTC-TTTTTTCTTCGTTGCTTCCTTTTTTAC-TTTTTTAT  897

seq1  TCCCCACTCCCAGTATGTATGTGTGTGTAAATGTTTTCTGTGGAAGTGTG  950
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TCCCCACTCCCAGTATGTATGTGTGTGTAAATG-TTTCTGT-GAAGTGTG  945

seq1  AGAATCA-TTTCAGCACCTTAAAAACTCCCTGGGGAGGCTTGATGAGTCT  999
      || |||| |||||||||||| ||||||||||||||  |||||||||||||
seq2  AG-ATCATTTTCAGCACCTT-AAAACTCCCTGGGGGAGCTTGATGAGTCT  993

seq1  GTGTGAAGCAGGGGGATAAATGCAACTGCATGCTTGTGGGCAGAGGAGAA  1049
      |||   |||| |||||| ||||| ||||||||||||| ||||||||||||
seq2  GTGGTGAGCA-GGGGAT-AATGC-ACTGCATGCTTGTTGGCAGAGGAGAA  1040

seq1  GCCAGGAGATGGATCTCAGTGG  1071
      |||||| ||||| |||||||||
seq2  GCCAGG-GATGG-TCTCAGTGG  1060

seq1: chr14_44805122_44806244
seq2: B6Ng01-135I06.g_70_1187 (reverse)

seq1  AGAGAAAACACATCACATGAAATCCA-CAGGCACTGCATGGGTCCTAAAA  49
      |||||||   | ||||||| |||||| | ||| |||||| |||||| |||
seq2  AGAGAAACACCTTCACATGCAATCCACCGGGCCCTGCATTGGTCCT-AAA  49

seq1  TCAGAAAGAATGTGCTAACTGAAAATATT-CCCATGGCTAGGGACTGAAT  98
      ||||||||||||||||| || |||||||| |||||||||| |||  ||||
seq2  TCAGAAAGAATGTGCTACCTAAAAATATTCCCCATGGCTA-GGATCGAAT  98

seq1  TTTAAAAGTGATGG-CCATGAAGGAATATAACAACACACCTGTATATCTA  147
      ||| |||||||||| ||||||| |||||| ||||||||||||||||||||
seq2  TTT-AAAGTGATGGACCATGAA-GAATAT-ACAACACACCTGTATATCTA  145

seq1  AGGCTGTTGTAGAGCACTCTGTCAAATATACAAATTATTTGTATTCACAT  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTGTAGAG-ACTCTGTCAAATATACAAATTATTTGTATTCACAT  194

seq1  AACACTAGCACCTTATACTTAAGCAAACTGTTTAGATTCCCCAGTTAATG  247
      |||||||||| | ||||| |||||||||||||||||||||||||| ||||
seq2  AACACTAGCA-CGTATAC-TAAGCAAACTGTTTAGATTCCCCAGTAAATG  242

seq1  CTATTATAAAAATCTCCAGGATATTTTGTAGACATAAAAAACAAATCTTA  297
      ||| ||||||||||| |||||   ||||||||||||||||||||||||||
seq2  CTAATATAAAAATCT-CAGGAATATTTGTAGACATAAAAAACAAATCTTA  291

seq1  AATGAGAT-AGGTACATAGGGGGCAAAGCATATAGACAGCTCAGTCAGTG  346
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATAAGGTACATAGGGGGCAAAGCATATAGACAGCTCAGTCAGTG  341

seq1  ATATGCTTTCCCCTCATGAACCAGGGTTCTTGGTACATTATTCAATCTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTTCCCCTCATGAACCAGGGTTCTTGGTACATTATTCAATCTGT  391

seq1  CTTAGCAAGTTCCAAAGGCTCTGTGGAGTAGGCTTCTCTGCCAGCAAAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAAGTTCCAAAGGCTCTGTGGAGTAGGCTTCTCTGCCAGCAAAGG  441

seq1  ATCACGTGTTGGTGGTGGACTAGCCTCTCCTTCACTGTTTCAGTCTTGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGTGTTGGTGGTGGACTAGCCTCTCCTTCACTGTTTCAGTCTTGTC  491

seq1  CCAAAGTAAACAGTTCCTTCCATCAGAGGCTCCCTTTATCATTGCCTGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTAAACAGTTCCTTCCATCAGAGGCTCCCTTTATCATTGCCTGAC  541

seq1  CTACTTGGTGTCCAAAGGTATGATCCCAGAAAAATAGGAAGTCATTATAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGGTGTCCAAAGGTATGATCCCAGAAAAATAGGAAGTCATTATAA  591

seq1  ATAGGATCCAATGGAACAATGTTCTTCAAATAATATAACTGTGTCAGGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCCAATGGAACAATGTTCTTCAAATAATATAACTGTGTCAGGGA  641

seq1  TATTTTGAGTAATATGTGGCTAAATAGTTAAAGGTCAATACTTGCATGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAGTAATATGTGGCTAAATAGTTAAAGGTCAATACTTGCATGGA  691

seq1  TTATCTCACACTGAGCAATATTTCATGAAAGGGCTGCATCACATAGTACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCACACTGAGCAATATTTCATGAAAGGGCTGCATCACATAGTACA  741

seq1  TTTTCACTCTTTAGCTGATGGATATCAGAATATCATCTTCTTCCGGACTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTCTTTAGCTGATGGATATCAGAATATCATCTTCTTCCGGACTA  791

seq1  CTCTGAGGACCATTACAGACCTCATGTGCCCTAGAGACTCTGTGGATATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGACCATTACAGACCTCATGTGCCCTAGAGACTCTGTGGATATC  841

seq1  TACTCCTTTTTTGGAATCTCTGGGTCAAAGGGGACTTCTTTTCTACTTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTTTTTTGGAATCTCTGGGTCAAAGGGGACTTCTTTTCTACTTTC  891

seq1  TGAACCTTGCTTCTCAAACACCTACCTGATTTTATACTACCAGACCTGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTGCTTCTCAAACACCTACCTGATTTTATACTACCAGACCTGTG  941

seq1  TGAAGGTCCTCATTTCTCCCAACCCCCATTTAGGCTGATTTTAACACTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCCTCATTTCTCCCAACCCCCATTTAGGCTGATTTTAACACTGA  991

seq1  GAAAATGATTTTGAATAACAGCAATTGCAGAATGATACACAGATAAAATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGATTTTGAATAACAGCAATTGCAGAATGATACACAGATAAAATA  1041

seq1  GTGTGAGTTCTTTAGATTATTATGACCCTCAAGGGGCTCCTGAAACGCCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTTCTTTAGATTATTATGACCCTCAAGGGGCTCCTGAAACGCCA  1091

seq1  TGTTTTGCACCACAGCTTTGGGAATTC  1123
      |||||||||||||||||||||||||||
seq2  TGTTTTGCACCACAGCTTTGGGAATTC  1118